Gvermi12890.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12890.t1
Unique NameGvermi12890.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1962222..1962974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12890Gvermi12890Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1962222..1962974 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12890.t1.start1Gvermi12890.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1962222..1962224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12890.t1.CDS1Gvermi12890.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1962222..1962974 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12890.t1.exon1Gvermi12890.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1962222..1962974 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12890.t1.stop1Gvermi12890.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1962972..1962974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12890.t1Gvermi12890.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1962222..1962974 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12890.t1 ID=Gvermi12890.t1|Name=Gvermi12890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=251bp
MMMTFVLRFFAVVSVPTLILLASNVDARRFCNIATHRVTGKNSLFSLVCR
CDNLPEMVGRSIRFLDKDTPDTVAQENLTVDCIEHQKPRMARACVHSGRA
FEREAAHVLRDCMGRRPRNPSPAGMMPFAFKTDKCETEFRELDVERLEAL
LVCACTQRPGYLVHPGVIQFITNGSPLGASAEQDVLETCTAEAMPQLNDA
CRNLPERFDLRGAQAFNVCCKRARVLFDNEKLLCQAIVPDQVDTIDLTFV
*
back to top

spliced messenger RNA

>Gvermi12890.t1 ID=Gvermi12890.t1|Name=Gvermi12890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_425:1962222..1962974+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGACATTTGTTCTTCGCTTCTTTGCCGTCGTGTCGGTTCCGAC
CCTGATCTTACTCGCTTCCAATGTCGATGCCAGACGCTTTTGCAACATCG
CCACCCACCGCGTTACTGGAAAGAATAGTCTCTTTTCATTAGTGTGTCGT
TGTGACAATCTTCCTGAAATGGTGGGACGTTCTATTCGCTTTCTTGACAA
GGATACGCCTGATACTGTTGCTCAAGAGAACCTGACAGTGGACTGTATAG
AGCATCAAAAGCCACGAATGGCTCGTGCTTGTGTTCACAGCGGCCGTGCC
TTTGAAAGAGAGGCGGCACATGTGTTAAGAGACTGTATGGGCAGACGTCC
TCGCAACCCCTCACCGGCAGGCATGATGCCATTCGCGTTCAAAACTGATA
AGTGCGAGACCGAGTTTCGCGAGCTCGATGTGGAGAGATTGGAGGCACTA
CTGGTTTGCGCATGCACACAACGTCCGGGATACCTCGTACATCCCGGTGT
TATTCAGTTTATTACTAATGGATCTCCTCTGGGCGCCAGTGCTGAGCAAG
ATGTTCTCGAGACGTGCACAGCCGAAGCCATGCCTCAATTGAATGATGCC
TGTCGCAACCTGCCGGAACGCTTCGATCTAAGGGGGGCTCAGGCCTTCAA
TGTGTGCTGTAAAAGAGCTCGCGTGCTCTTCGACAATGAAAAACTTCTAT
GTCAGGCGATCGTTCCTGACCAGGTGGATACGATTGACCTTACTTTTGTG
TAG
back to top

protein sequence of Gvermi12890.t1

>Gvermi12890.t1 ID=Gvermi12890.t1|Name=Gvermi12890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=251bp
MMMTFVLRFFAVVSVPTLILLASNVDARRFCNIATHRVTGKNSLFSLVCR
CDNLPEMVGRSIRFLDKDTPDTVAQENLTVDCIEHQKPRMARACVHSGRA
FEREAAHVLRDCMGRRPRNPSPAGMMPFAFKTDKCETEFRELDVERLEAL
LVCACTQRPGYLVHPGVIQFITNGSPLGASAEQDVLETCTAEAMPQLNDA
CRNLPERFDLRGAQAFNVCCKRARVLFDNEKLLCQAIVPDQVDTIDLTFV
*
back to top

mRNA from alignment at ScGOVlb_425:1962222..1962974+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12890.t1 ID=Gvermi12890.t1|Name=Gvermi12890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_425:1962222..1962974+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGATGACATTTGTTCTTCGCTTCTTTGCCGTCGTGTCGGTTCCGAC
CCTGATCTTACTCGCTTCCAATGTCGATGCCAGACGCTTTTGCAACATCG
CCACCCACCGCGTTACTGGAAAGAATAGTCTCTTTTCATTAGTGTGTCGT
TGTGACAATCTTCCTGAAATGGTGGGACGTTCTATTCGCTTTCTTGACAA
GGATACGCCTGATACTGTTGCTCAAGAGAACCTGACAGTGGACTGTATAG
AGCATCAAAAGCCACGAATGGCTCGTGCTTGTGTTCACAGCGGCCGTGCC
TTTGAAAGAGAGGCGGCACATGTGTTAAGAGACTGTATGGGCAGACGTCC
TCGCAACCCCTCACCGGCAGGCATGATGCCATTCGCGTTCAAAACTGATA
AGTGCGAGACCGAGTTTCGCGAGCTCGATGTGGAGAGATTGGAGGCACTA
CTGGTTTGCGCATGCACACAACGTCCGGGATACCTCGTACATCCCGGTGT
TATTCAGTTTATTACTAATGGATCTCCTCTGGGCGCCAGTGCTGAGCAAG
ATGTTCTCGAGACGTGCACAGCCGAAGCCATGCCTCAATTGAATGATGCC
TGTCGCAACCTGCCGGAACGCTTCGATCTAAGGGGGGCTCAGGCCTTCAA
TGTGTGCTGTAAAAGAGCTCGCGTGCTCTTCGACAATGAAAAACTTCTAT
GTCAGGCGATCGTTCCTGACCAGGTGGATACGATTGACCTTACTTTTGTG
TAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1962222..1962974+

>Gvermi12890.t1 ID=Gvermi12890.t1|Name=Gvermi12890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=753bp|location=Sequence derived from alignment at ScGOVlb_425:1962222..1962974+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGATGACATTTGTTCTTCGCTTCTTTGCCGTCGTGTCGGTTCCGAC
CCTGATCTTACTCGCTTCCAATGTCGATGCCAGACGCTTTTGCAACATCG
CCACCCACCGCGTTACTGGAAAGAATAGTCTCTTTTCATTAGTGTGTCGT
TGTGACAATCTTCCTGAAATGGTGGGACGTTCTATTCGCTTTCTTGACAA
GGATACGCCTGATACTGTTGCTCAAGAGAACCTGACAGTGGACTGTATAG
AGCATCAAAAGCCACGAATGGCTCGTGCTTGTGTTCACAGCGGCCGTGCC
TTTGAAAGAGAGGCGGCACATGTGTTAAGAGACTGTATGGGCAGACGTCC
TCGCAACCCCTCACCGGCAGGCATGATGCCATTCGCGTTCAAAACTGATA
AGTGCGAGACCGAGTTTCGCGAGCTCGATGTGGAGAGATTGGAGGCACTA
CTGGTTTGCGCATGCACACAACGTCCGGGATACCTCGTACATCCCGGTGT
TATTCAGTTTATTACTAATGGATCTCCTCTGGGCGCCAGTGCTGAGCAAG
ATGTTCTCGAGACGTGCACAGCCGAAGCCATGCCTCAATTGAATGATGCC
TGTCGCAACCTGCCGGAACGCTTCGATCTAAGGGGGGCTCAGGCCTTCAA
TGTGTGCTGTAAAAGAGCTCGCGTGCTCTTCGACAATGAAAAACTTCTAT
GTCAGGCGATCGTTCCTGACCAGGTGGATACGATTGACCTTACTTTTGTG
TAG
back to top