Gvermi12711.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12711.t1
Unique NameGvermi12711.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1100420..1101694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog80637.XP_007775249.1
Preferred nameARP6
PFAMsActin
Max annot lvl4751|Fungi
KEGG koko:K11662
GOsGO:0000228,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034728,GO:0040029,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098687,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
Evalue2.55e-82
EggNOG OGsKOG0680@1|root,KOG0680@2759|Eukaryota,38D34@33154|Opisthokonta,3NV2X@4751|Fungi,3UZTH@5204|Basidiomycota,22EEY@155619|Agaricomycetes
DescriptionBelongs to the actin family
COG categoryZ
BRITEko00000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12711Gvermi12711Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1100420..1101694 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12711.t1.start1Gvermi12711.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1100420..1100422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12711.t1.CDS1Gvermi12711.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1100420..1101694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12711.t1.exon1Gvermi12711.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1100420..1101694 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12711.t1.stop1Gvermi12711.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1101692..1101694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12711.t1Gvermi12711.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1100420..1101694 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=425bp
METKVVLDNGGSHIKAAKITAEEFKKIKANGPPPSALCVPNALARPAKNA
VQPPANKLGKSRRPPHFLVGREILIAPDTSGMSFRRPVDLGFVSTWDAQR
DVWNSVFSCDQGIGLSKAEMKNSSLIVTEQLGVPMHMRRAMDEYVFECFE
FSEYAPVPPQRLAALGVGKQTCLVLDSGFSFTTAVPIVEGQELGHCAKRL
KVGGKLLTNYLRELITYRSWNMTDESAVVNAVKERLCYLSLNYTSELSAC
KKGRGIMKEYVLPDLTRTMFDPVGHLLQEGEETDGTEQMLKMNNERIAIP
EILFNPSDIGLNQAGVAETIFQAVEACPEDVRGDMYENIILMGGNCLFPN
FKERLENELRPLVDSIYEVETFMDKEPTLTAFSGGVRAVVDNSTSVRYVS
RETFAELGSDGILRELYGDDMEID*
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spliced messenger RNA

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_425:1100420..1101694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACAAAAGTCGTTTTGGATAATGGCGGCAGCCATATCAAAGCAGC
CAAGATTACCGCTGAGGAGTTCAAGAAGATCAAGGCGAATGGGCCACCAC
CAAGCGCACTATGTGTGCCCAATGCTCTCGCTCGTCCCGCTAAGAATGCT
GTGCAACCTCCGGCAAACAAACTTGGCAAATCCCGACGTCCACCCCATTT
CCTGGTCGGCCGCGAAATCTTAATTGCTCCTGATACGTCGGGGATGAGTT
TCCGCCGCCCAGTAGACCTTGGTTTCGTTAGCACATGGGATGCGCAGCGC
GACGTGTGGAATAGCGTGTTCTCCTGTGATCAGGGAATTGGACTATCGAA
AGCAGAGATGAAGAACAGCAGTTTGATTGTCACGGAACAACTTGGAGTGC
CGATGCACATGCGACGGGCCATGGATGAGTATGTATTTGAATGCTTTGAG
TTCTCCGAATATGCGCCTGTGCCCCCCCAACGGTTAGCTGCTCTGGGCGT
TGGAAAACAAACTTGCCTCGTTCTGGACTCTGGATTTTCGTTCACAACTG
CAGTACCTATTGTCGAAGGACAAGAACTTGGTCATTGTGCAAAAAGGCTC
AAAGTAGGCGGAAAGCTTCTCACGAACTACTTGAGAGAATTGATTACGTA
CCGTTCTTGGAATATGACCGATGAATCAGCCGTGGTTAACGCGGTAAAAG
AGCGTTTGTGTTATCTGTCCTTGAACTACACAAGTGAACTATCAGCCTGT
AAGAAGGGAAGAGGTATCATGAAGGAATACGTTCTCCCTGATCTTACGAG
AACAATGTTTGATCCCGTTGGCCATCTCCTTCAAGAGGGAGAAGAGACGG
ACGGTACGGAGCAAATGCTCAAGATGAATAACGAACGCATCGCGATTCCA
GAGATCTTGTTCAATCCGTCCGATATCGGCCTCAATCAGGCGGGAGTCGC
GGAAACCATCTTTCAGGCGGTAGAAGCGTGTCCTGAAGACGTGCGTGGGG
ACATGTACGAAAACATCATTCTCATGGGGGGCAACTGTTTGTTCCCAAAC
TTTAAAGAGCGGCTTGAAAACGAGCTGAGGCCGTTGGTGGATTCCATTTA
CGAGGTGGAAACCTTTATGGATAAAGAGCCAACGTTAACTGCTTTCAGCG
GAGGCGTACGAGCTGTCGTTGATAATTCTACCTCCGTTCGATATGTGTCC
AGGGAAACGTTCGCAGAGTTGGGTTCCGACGGCATTCTGAGAGAATTGTA
CGGAGATGACATGGAAATCGACTAG
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protein sequence of Gvermi12711.t1

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=425bp
METKVVLDNGGSHIKAAKITAEEFKKIKANGPPPSALCVPNALARPAKNA
VQPPANKLGKSRRPPHFLVGREILIAPDTSGMSFRRPVDLGFVSTWDAQR
DVWNSVFSCDQGIGLSKAEMKNSSLIVTEQLGVPMHMRRAMDEYVFECFE
FSEYAPVPPQRLAALGVGKQTCLVLDSGFSFTTAVPIVEGQELGHCAKRL
KVGGKLLTNYLRELITYRSWNMTDESAVVNAVKERLCYLSLNYTSELSAC
KKGRGIMKEYVLPDLTRTMFDPVGHLLQEGEETDGTEQMLKMNNERIAIP
EILFNPSDIGLNQAGVAETIFQAVEACPEDVRGDMYENIILMGGNCLFPN
FKERLENELRPLVDSIYEVETFMDKEPTLTAFSGGVRAVVDNSTSVRYVS
RETFAELGSDGILRELYGDDMEID*
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mRNA from alignment at ScGOVlb_425:1100420..1101694+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_425:1100420..1101694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAACAAAAGTCGTTTTGGATAATGGCGGCAGCCATATCAAAGCAGC
CAAGATTACCGCTGAGGAGTTCAAGAAGATCAAGGCGAATGGGCCACCAC
CAAGCGCACTATGTGTGCCCAATGCTCTCGCTCGTCCCGCTAAGAATGCT
GTGCAACCTCCGGCAAACAAACTTGGCAAATCCCGACGTCCACCCCATTT
CCTGGTCGGCCGCGAAATCTTAATTGCTCCTGATACGTCGGGGATGAGTT
TCCGCCGCCCAGTAGACCTTGGTTTCGTTAGCACATGGGATGCGCAGCGC
GACGTGTGGAATAGCGTGTTCTCCTGTGATCAGGGAATTGGACTATCGAA
AGCAGAGATGAAGAACAGCAGTTTGATTGTCACGGAACAACTTGGAGTGC
CGATGCACATGCGACGGGCCATGGATGAGTATGTATTTGAATGCTTTGAG
TTCTCCGAATATGCGCCTGTGCCCCCCCAACGGTTAGCTGCTCTGGGCGT
TGGAAAACAAACTTGCCTCGTTCTGGACTCTGGATTTTCGTTCACAACTG
CAGTACCTATTGTCGAAGGACAAGAACTTGGTCATTGTGCAAAAAGGCTC
AAAGTAGGCGGAAAGCTTCTCACGAACTACTTGAGAGAATTGATTACGTA
CCGTTCTTGGAATATGACCGATGAATCAGCCGTGGTTAACGCGGTAAAAG
AGCGTTTGTGTTATCTGTCCTTGAACTACACAAGTGAACTATCAGCCTGT
AAGAAGGGAAGAGGTATCATGAAGGAATACGTTCTCCCTGATCTTACGAG
AACAATGTTTGATCCCGTTGGCCATCTCCTTCAAGAGGGAGAAGAGACGG
ACGGTACGGAGCAAATGCTCAAGATGAATAACGAACGCATCGCGATTCCA
GAGATCTTGTTCAATCCGTCCGATATCGGCCTCAATCAGGCGGGAGTCGC
GGAAACCATCTTTCAGGCGGTAGAAGCGTGTCCTGAAGACGTGCGTGGGG
ACATGTACGAAAACATCATTCTCATGGGGGGCAACTGTTTGTTCCCAAAC
TTTAAAGAGCGGCTTGAAAACGAGCTGAGGCCGTTGGTGGATTCCATTTA
CGAGGTGGAAACCTTTATGGATAAAGAGCCAACGTTAACTGCTTTCAGCG
GAGGCGTACGAGCTGTCGTTGATAATTCTACCTCCGTTCGATATGTGTCC
AGGGAAACGTTCGCAGAGTTGGGTTCCGACGGCATTCTGAGAGAATTGTA
CGGAGATGACATGGAAATCGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1100420..1101694+

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1275bp|location=Sequence derived from alignment at ScGOVlb_425:1100420..1101694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAACAAAAGTCGTTTTGGATAATGGCGGCAGCCATATCAAAGCAGC
CAAGATTACCGCTGAGGAGTTCAAGAAGATCAAGGCGAATGGGCCACCAC
CAAGCGCACTATGTGTGCCCAATGCTCTCGCTCGTCCCGCTAAGAATGCT
GTGCAACCTCCGGCAAACAAACTTGGCAAATCCCGACGTCCACCCCATTT
CCTGGTCGGCCGCGAAATCTTAATTGCTCCTGATACGTCGGGGATGAGTT
TCCGCCGCCCAGTAGACCTTGGTTTCGTTAGCACATGGGATGCGCAGCGC
GACGTGTGGAATAGCGTGTTCTCCTGTGATCAGGGAATTGGACTATCGAA
AGCAGAGATGAAGAACAGCAGTTTGATTGTCACGGAACAACTTGGAGTGC
CGATGCACATGCGACGGGCCATGGATGAGTATGTATTTGAATGCTTTGAG
TTCTCCGAATATGCGCCTGTGCCCCCCCAACGGTTAGCTGCTCTGGGCGT
TGGAAAACAAACTTGCCTCGTTCTGGACTCTGGATTTTCGTTCACAACTG
CAGTACCTATTGTCGAAGGACAAGAACTTGGTCATTGTGCAAAAAGGCTC
AAAGTAGGCGGAAAGCTTCTCACGAACTACTTGAGAGAATTGATTACGTA
CCGTTCTTGGAATATGACCGATGAATCAGCCGTGGTTAACGCGGTAAAAG
AGCGTTTGTGTTATCTGTCCTTGAACTACACAAGTGAACTATCAGCCTGT
AAGAAGGGAAGAGGTATCATGAAGGAATACGTTCTCCCTGATCTTACGAG
AACAATGTTTGATCCCGTTGGCCATCTCCTTCAAGAGGGAGAAGAGACGG
ACGGTACGGAGCAAATGCTCAAGATGAATAACGAACGCATCGCGATTCCA
GAGATCTTGTTCAATCCGTCCGATATCGGCCTCAATCAGGCGGGAGTCGC
GGAAACCATCTTTCAGGCGGTAGAAGCGTGTCCTGAAGACGTGCGTGGGG
ACATGTACGAAAACATCATTCTCATGGGGGGCAACTGTTTGTTCCCAAAC
TTTAAAGAGCGGCTTGAAAACGAGCTGAGGCCGTTGGTGGATTCCATTTA
CGAGGTGGAAACCTTTATGGATAAAGAGCCAACGTTAACTGCTTTCAGCG
GAGGCGTACGAGCTGTCGTTGATAATTCTACCTCCGTTCGATATGTGTCC
AGGGAAACGTTCGCAGAGTTGGGTTCCGACGGCATTCTGAGAGAATTGTA
CGGAGATGACATGGAAATCGACTAG
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