Gvermi12844.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12844.t1
Unique Name	Gvermi12844.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	657

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1778396..1780366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709381.1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04512,ko:K05747
KEGG Pathway	ko04062,ko04144,ko04310,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04310,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Evalue	2.73e-115
EggNOG OGs	2EUZ9@1\|root,2SX1S@2759\|Eukaryota
BRITE	ko00000,ko00001,ko04131,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12844	Gvermi12844	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1778396..1780366 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12844.t1.start1	Gvermi12844.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1778396..1778398 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12844.t1.CDS1	Gvermi12844.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1778396..1780366 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12844.t1.exon1	Gvermi12844.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1778396..1780366 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12844.t1.stop1	Gvermi12844.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1780364..1780366 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12844.t1	Gvermi12844.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1778396..1780366 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1778396..1780366+
coding sequence from alignment at ScGOVlb_425:1778396..1780366+

mRNA sequence

>Gvermi12844.t1 ID=Gvermi12844.t1|Name=Gvermi12844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=657bp
MARKSRKNDAQITLEERLGPDVLKKLETMAGEFVRFERGQFGFFIDPARY
AVRQRQVGPLGRGRRRKVVAGVDKDGNIITAWIGVDNTNKGTKTDGGELV
NIPDGYGDGTGPGGTGTGKGGGTGKGGGGSGGNGGTGDGSGSGGGQEGGS
GTESGNDGGKGGQGSGKDGGKTGTKPPSSAAEVAKQAAERRALAGIAGPS
EKKDAEDSKKDADKTSGPPVPKPPVGNLQAKANEARGRKKKPLHWAKVPK
NLLNGTVWTALEDNNIRLNEDEIDELFGVDVAPQFIAEAEVAKPEVLPHK
RKHNVNIILANLKMTSDQIKDVIRVPTYKEMESGRLQALLMVCPTQEEEQ
LLLQNLNIIDEVDKTDRFMMDLAQLPGLRGKVLCGLAAKTFNEEAVDLIR
NMDTFAMIPVEVQNSPKLNSILEIILAIGNFLNSGTGRGGAHGFKLEALA
MLSTVKDSRGDSLLDYLVKLLKENHAHILPLDDMPTLEHSATISLDAIGE
NTQALLDGVTNVGEQIKQIGDDPSMANFKSEMVTFSEEANKVREEIVSLR
ALMMEKLQSMMAHFGERNKASRGRQEDILRMLREFVDELVAGIARYDEKH
ERKAKKGAKSKSRGVASGDDNEDRSGNMNGLAGLPDSPQEGPNVSAKRLS
SQIGSS*

spliced messenger RNA

>Gvermi12844.t1 ID=Gvermi12844.t1|Name=Gvermi12844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at ScGOVlb_425:1778396..1780366+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGAAAGAGCAGAAAAAATGACGCTCAGATAACCTTGGAAGAGAG
GCTGGGTCCAGATGTGTTGAAGAAATTGGAAACCATGGCTGGTGAGTTTG
TTCGCTTTGAAAGAGGCCAATTTGGATTCTTCATAGATCCTGCGAGATAT
GCCGTGAGACAAAGGCAGGTCGGTCCGTTGGGTAGAGGACGTCGCAGGAA
AGTGGTTGCGGGCGTCGACAAAGACGGAAACATTATCACCGCATGGATTG
GGGTTGATAATACAAATAAAGGGACAAAGACAGACGGGGGAGAACTCGTT
AACATTCCAGACGGTTACGGAGATGGCACTGGCCCAGGCgggacagggac
tgggaaaggaggcggcacaggaaaaggTGGTGGCGGATCTGGCGGGAATG
GTGGCACAGGTGATGGAAGTGGAAGTGGCGGTGGACAAGAAGGAGGCTCT
GGAACTGAATCTGGAAATGACGGTGGGAAAGGCGGACAAGGAAGTGGGAA
AGATGGTGGTAAAACTGGGACTAAGCCTCCTTCAAGTGCCGCAGAAGTGG
CAAAACAGGCGGCAGAACGAAGAGCGCTGGCAGGAATCGCTGGGCCTTCT
GAGAAAAAAGACGCGGAGGACTCAAAGAAAGATGCTGACAAAACTTCTGG
ACCACCAGTACCGAAGCCACCCGTCGGAAACCTTCAAGCAAAAGCTAATG
AAGCCAGAGGACGCAAAAAGAAGCCACTGCACTGGGCAAAGGTCCCGAAA
AACCTTCTGAACGGCACCGTTTGGACTGCACTTGAAGACAATAACATCAG
ACTCAATGAAGATGAAATTGATGAGCTATTCGGGGTCGATGTCGCCCCGC
AGTTTATTGCGGAGGCCGAAGTTGCGAAACCCGAAGTTTTGCCTCACAAG
CGGAAGCACAACGTCAATATTATTCTAGCAAACCTGAAGATGACATCGGA
CCAGATCAAAGATGTTATTAGGGTTCCTACTTATAAAGAGATGGAGTCTG
GACGTTTACAAGCCCTTTTGATGGTTTGCCCGACACAAGAGGAAGAACAA
CTCTTACTTCAAAATCTCAACATCATTGATGAAGTTGATAAAACGGATCG
GTTCATGATGGACCTGGCACAACTTCCAGGCCTAAGAGGAAAGGTGTTGT
GCGGTTTGGCCGCCAAAACGTTCAATGAAGAAGCTGTCGATTTGATCAGA
AATATGGACACTTTTGCAATGATTCCTGTCGAAGTCCAAAACTCTCCCAA
GTTGAACAGTATTCTGGAGATTATACTAGCCATTGGAAACTTCCTGAACT
CTGGAACTGGTCGAGGAGGGGCACATGGATTCAAATTAGAGGCCCTAGCG
ATGCTATCAACTGTCAAGGACTCCAGGGGAGATAGTCTATTAGACTACCT
CGTCAAACTGTTGAAAGAGAACCATGCTCATATTCTTCCGCTGGATGACA
TGCCGACGCTCGAGCATAGTGCCACCATCTCATTGGACGCAATTGGAGAA
AATACGCAAGCCTTGCTTGACGGTGTGACAAACGTCGGGGAACAAATCAA
ACAAATCGGTGACGATCCATCAATGGCGAACTTCAAATCCGAAATGGTGA
CTTTTTCTGAGGAAGCGAACAAGGTCCGAGAGGAAATAGTTTCCCTTCGA
GCGCTCATGATGGAAAAACTTCAGTCGATGATGGCACACTTTGGAGAGCG
AAACAAAGCTTCGAGAGGTCGTCAGGAGGACATATTGCGGATGTTAAGAG
AGTTTGTGGACGAGCTGGTCGCTGGAATCGCCCGCTATGATGAAAAGCAC
GAGCGCAAAGCGAAGAAGGGAGCGAAGTCCAAATCCAGAGGCGTGGCGTC
TGGCGATGATAATGAGGATCGTTCTGGTAATATGAATGGGTTGGCAGGAC
TACCTGACTCGCCTCAAGAGGGACCCAACGTTTCTGCAAAAAGATTGTCA
AGTCAAATAGGAAGCAGCTAG

protein sequence of Gvermi12844.t1

>Gvermi12844.t1 ID=Gvermi12844.t1|Name=Gvermi12844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=657bp
MARKSRKNDAQITLEERLGPDVLKKLETMAGEFVRFERGQFGFFIDPARY
AVRQRQVGPLGRGRRRKVVAGVDKDGNIITAWIGVDNTNKGTKTDGGELV
NIPDGYGDGTGPGGTGTGKGGGTGKGGGGSGGNGGTGDGSGSGGGQEGGS
GTESGNDGGKGGQGSGKDGGKTGTKPPSSAAEVAKQAAERRALAGIAGPS
EKKDAEDSKKDADKTSGPPVPKPPVGNLQAKANEARGRKKKPLHWAKVPK
NLLNGTVWTALEDNNIRLNEDEIDELFGVDVAPQFIAEAEVAKPEVLPHK
RKHNVNIILANLKMTSDQIKDVIRVPTYKEMESGRLQALLMVCPTQEEEQ
LLLQNLNIIDEVDKTDRFMMDLAQLPGLRGKVLCGLAAKTFNEEAVDLIR
NMDTFAMIPVEVQNSPKLNSILEIILAIGNFLNSGTGRGGAHGFKLEALA
MLSTVKDSRGDSLLDYLVKLLKENHAHILPLDDMPTLEHSATISLDAIGE
NTQALLDGVTNVGEQIKQIGDDPSMANFKSEMVTFSEEANKVREEIVSLR
ALMMEKLQSMMAHFGERNKASRGRQEDILRMLREFVDELVAGIARYDEKH
ERKAKKGAKSKSRGVASGDDNEDRSGNMNGLAGLPDSPQEGPNVSAKRLS
SQIGSS*

mRNA from alignment at ScGOVlb_425:1778396..1780366+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12844.t1 ID=Gvermi12844.t1|Name=Gvermi12844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at ScGOVlb_425:1778396..1780366+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGAAAGAGCAGAAAAAATGACGCTCAGATAACCTTGGAAGAGAG
GCTGGGTCCAGATGTGTTGAAGAAATTGGAAACCATGGCTGGTGAGTTTG
TTCGCTTTGAAAGAGGCCAATTTGGATTCTTCATAGATCCTGCGAGATAT
GCCGTGAGACAAAGGCAGGTCGGTCCGTTGGGTAGAGGACGTCGCAGGAA
AGTGGTTGCGGGCGTCGACAAAGACGGAAACATTATCACCGCATGGATTG
GGGTTGATAATACAAATAAAGGGACAAAGACAGACGGGGGAGAACTCGTT
AACATTCCAGACGGTTACGGAGATGGCACTGGCCCAGGCgggacagggac
tgggaaaggaggcggcacaggaaaaggTGGTGGCGGATCTGGCGGGAATG
GTGGCACAGGTGATGGAAGTGGAAGTGGCGGTGGACAAGAAGGAGGCTCT
GGAACTGAATCTGGAAATGACGGTGGGAAAGGCGGACAAGGAAGTGGGAA
AGATGGTGGTAAAACTGGGACTAAGCCTCCTTCAAGTGCCGCAGAAGTGG
CAAAACAGGCGGCAGAACGAAGAGCGCTGGCAGGAATCGCTGGGCCTTCT
GAGAAAAAAGACGCGGAGGACTCAAAGAAAGATGCTGACAAAACTTCTGG
ACCACCAGTACCGAAGCCACCCGTCGGAAACCTTCAAGCAAAAGCTAATG
AAGCCAGAGGACGCAAAAAGAAGCCACTGCACTGGGCAAAGGTCCCGAAA
AACCTTCTGAACGGCACCGTTTGGACTGCACTTGAAGACAATAACATCAG
ACTCAATGAAGATGAAATTGATGAGCTATTCGGGGTCGATGTCGCCCCGC
AGTTTATTGCGGAGGCCGAAGTTGCGAAACCCGAAGTTTTGCCTCACAAG
CGGAAGCACAACGTCAATATTATTCTAGCAAACCTGAAGATGACATCGGA
CCAGATCAAAGATGTTATTAGGGTTCCTACTTATAAAGAGATGGAGTCTG
GACGTTTACAAGCCCTTTTGATGGTTTGCCCGACACAAGAGGAAGAACAA
CTCTTACTTCAAAATCTCAACATCATTGATGAAGTTGATAAAACGGATCG
GTTCATGATGGACCTGGCACAACTTCCAGGCCTAAGAGGAAAGGTGTTGT
GCGGTTTGGCCGCCAAAACGTTCAATGAAGAAGCTGTCGATTTGATCAGA
AATATGGACACTTTTGCAATGATTCCTGTCGAAGTCCAAAACTCTCCCAA
GTTGAACAGTATTCTGGAGATTATACTAGCCATTGGAAACTTCCTGAACT
CTGGAACTGGTCGAGGAGGGGCACATGGATTCAAATTAGAGGCCCTAGCG
ATGCTATCAACTGTCAAGGACTCCAGGGGAGATAGTCTATTAGACTACCT
CGTCAAACTGTTGAAAGAGAACCATGCTCATATTCTTCCGCTGGATGACA
TGCCGACGCTCGAGCATAGTGCCACCATCTCATTGGACGCAATTGGAGAA
AATACGCAAGCCTTGCTTGACGGTGTGACAAACGTCGGGGAACAAATCAA
ACAAATCGGTGACGATCCATCAATGGCGAACTTCAAATCCGAAATGGTGA
CTTTTTCTGAGGAAGCGAACAAGGTCCGAGAGGAAATAGTTTCCCTTCGA
GCGCTCATGATGGAAAAACTTCAGTCGATGATGGCACACTTTGGAGAGCG
AAACAAAGCTTCGAGAGGTCGTCAGGAGGACATATTGCGGATGTTAAGAG
AGTTTGTGGACGAGCTGGTCGCTGGAATCGCCCGCTATGATGAAAAGCAC
GAGCGCAAAGCGAAGAAGGGAGCGAAGTCCAAATCCAGAGGCGTGGCGTC
TGGCGATGATAATGAGGATCGTTCTGGTAATATGAATGGGTTGGCAGGAC
TACCTGACTCGCCTCAAGAGGGACCCAACGTTTCTGCAAAAAGATTGTCA
AGTCAAATAGGAAGCAGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1778396..1780366+

>Gvermi12844.t1 ID=Gvermi12844.t1|Name=Gvermi12844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1971bp|location=Sequence derived from alignment at ScGOVlb_425:1778396..1780366+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGAAAGAGCAGAAAAAATGACGCTCAGATAACCTTGGAAGAGAG
GCTGGGTCCAGATGTGTTGAAGAAATTGGAAACCATGGCTGGTGAGTTTG
TTCGCTTTGAAAGAGGCCAATTTGGATTCTTCATAGATCCTGCGAGATAT
GCCGTGAGACAAAGGCAGGTCGGTCCGTTGGGTAGAGGACGTCGCAGGAA
AGTGGTTGCGGGCGTCGACAAAGACGGAAACATTATCACCGCATGGATTG
GGGTTGATAATACAAATAAAGGGACAAAGACAGACGGGGGAGAACTCGTT
AACATTCCAGACGGTTACGGAGATGGCACTGGCCCAGGCgggacagggac
tgggaaaggaggcggcacaggaaaaggTGGTGGCGGATCTGGCGGGAATG
GTGGCACAGGTGATGGAAGTGGAAGTGGCGGTGGACAAGAAGGAGGCTCT
GGAACTGAATCTGGAAATGACGGTGGGAAAGGCGGACAAGGAAGTGGGAA
AGATGGTGGTAAAACTGGGACTAAGCCTCCTTCAAGTGCCGCAGAAGTGG
CAAAACAGGCGGCAGAACGAAGAGCGCTGGCAGGAATCGCTGGGCCTTCT
GAGAAAAAAGACGCGGAGGACTCAAAGAAAGATGCTGACAAAACTTCTGG
ACCACCAGTACCGAAGCCACCCGTCGGAAACCTTCAAGCAAAAGCTAATG
AAGCCAGAGGACGCAAAAAGAAGCCACTGCACTGGGCAAAGGTCCCGAAA
AACCTTCTGAACGGCACCGTTTGGACTGCACTTGAAGACAATAACATCAG
ACTCAATGAAGATGAAATTGATGAGCTATTCGGGGTCGATGTCGCCCCGC
AGTTTATTGCGGAGGCCGAAGTTGCGAAACCCGAAGTTTTGCCTCACAAG
CGGAAGCACAACGTCAATATTATTCTAGCAAACCTGAAGATGACATCGGA
CCAGATCAAAGATGTTATTAGGGTTCCTACTTATAAAGAGATGGAGTCTG
GACGTTTACAAGCCCTTTTGATGGTTTGCCCGACACAAGAGGAAGAACAA
CTCTTACTTCAAAATCTCAACATCATTGATGAAGTTGATAAAACGGATCG
GTTCATGATGGACCTGGCACAACTTCCAGGCCTAAGAGGAAAGGTGTTGT
GCGGTTTGGCCGCCAAAACGTTCAATGAAGAAGCTGTCGATTTGATCAGA
AATATGGACACTTTTGCAATGATTCCTGTCGAAGTCCAAAACTCTCCCAA
GTTGAACAGTATTCTGGAGATTATACTAGCCATTGGAAACTTCCTGAACT
CTGGAACTGGTCGAGGAGGGGCACATGGATTCAAATTAGAGGCCCTAGCG
ATGCTATCAACTGTCAAGGACTCCAGGGGAGATAGTCTATTAGACTACCT
CGTCAAACTGTTGAAAGAGAACCATGCTCATATTCTTCCGCTGGATGACA
TGCCGACGCTCGAGCATAGTGCCACCATCTCATTGGACGCAATTGGAGAA
AATACGCAAGCCTTGCTTGACGGTGTGACAAACGTCGGGGAACAAATCAA
ACAAATCGGTGACGATCCATCAATGGCGAACTTCAAATCCGAAATGGTGA
CTTTTTCTGAGGAAGCGAACAAGGTCCGAGAGGAAATAGTTTCCCTTCGA
GCGCTCATGATGGAAAAACTTCAGTCGATGATGGCACACTTTGGAGAGCG
AAACAAAGCTTCGAGAGGTCGTCAGGAGGACATATTGCGGATGTTAAGAG
AGTTTGTGGACGAGCTGGTCGCTGGAATCGCCCGCTATGATGAAAAGCAC
GAGCGCAAAGCGAAGAAGGGAGCGAAGTCCAAATCCAGAGGCGTGGCGTC
TGGCGATGATAATGAGGATCGTTCTGGTAATATGAATGGGTTGGCAGGAC
TACCTGACTCGCCTCAAGAGGGACCCAACGTTTCTGCAAAAAGATTGTCA
AGTCAAATAGGAAGCAGCTAG