Gvermi12925.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12925.t1
Unique NameGvermi12925.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length653
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2136093..2138158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709381.1
Max annot lvl2759|Eukaryota
KEGG koko:K04512,ko:K05747
KEGG Pathwayko04062,ko04144,ko04310,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04310,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Evalue1.43e-113
EggNOG OGs2EUZ9@1|root,2SX1S@2759|Eukaryota
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12925Gvermi12925Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2136093..2138158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12925.t1Gvermi12925.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2136093..2138158 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12925.t1.stop1Gvermi12925.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2136093..2136095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12925.t1.CDS1Gvermi12925.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2136093..2137960 -
Gvermi12925.t1.CDS2Gvermi12925.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2138068..2138158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12925.t1.exon1Gvermi12925.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2136093..2137960 -
Gvermi12925.t1.exon2Gvermi12925.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2138068..2138158 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12925.t1.intron1Gvermi12925.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2137961..2138067 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12925.t1.start1Gvermi12925.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2138156..2138158 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12925.t1 ID=Gvermi12925.t1|Name=Gvermi12925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=653bp
MSRKYDARSTLEDRLGPDVLVRLQSMAHEFVRFERGQFGFYIDPARYAVK
QRQVGPLGRGRRRKVVAGVDKDGNIITAWIGIESRSKGARTQGGEMVTIP
DEYAEGALGGGGGGGGPGGGGGGGYGPGGGGGGGYGPGGGGGGGGGFGPG
GGGGPGGGGPGGRGPGAGGGNAPGAAGAVAAAAAARKNQAANGPTPKAPG
APGAPGAPGTPAVPKAPVGQVAGKDNAARGRQKKPLHWAKVPMNLVNQSF
WPSLDESNVRLDEEEIDDLFGVDVVERFQIAAAEVKPEVLPHKRKHNVNI
LLANLKMSAEHIKDVVRVPTYKEMEAGTLQALLLVCPTQEEEMLLAQNAN
IRAEVDKTDAFMMDLADLKGLRGKILCALAAKTFNDEAVDVIRNMDTFAM
IPVEVMNSEKLARILEAVLALGNFLNSGTGRGGAHGFKLEALAMLSTVKD
AKGNALLDYLIFMLERDNPGLLPLDDMPTLARSKELSLEAIGEEVQALLE
SVTNVSEQIKQIGEDQTLAAFKAEMEVFAEEATKVREEIVSLRGLMMQKL
QSMMQHFGERNKMSRGRQEDVLRMLREFSEEIVNGLARAKERNERMRKQA
AKNDAKKVGNVGGANSGVGAGPEVITGDLSNMLGSADAGVEAGGGDDGGG
ED*
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spliced messenger RNA

>Gvermi12925.t1 ID=Gvermi12925.t1|Name=Gvermi12925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1959bp|location=Sequence derived from alignment at ScGOVlb_425:2136093..2138158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCAAGTACGACGCACGCTCCACGCTTGAGGACCGCCTCGGCCC
CGACGTGCTGGTCAGGCTGCAGAGCATGGCTCATGAGTTCGTGCGTTTTG
AGCGAGGCCAGTTCGGCTTCTACATCGATCCGGCACGCTACGCCGTCAAG
CAGCGACAGGTCGGCCCGCTGGGCCGCGGGCGTCGCCGCAAGGTCGTGGC
CGGCGTCGACAAGGATGGAAACATTATCACCGCATGGATCGGCATCGAAT
CGCGCTCCAAGGGCGCGCGCACGCAGGGCGGCGAGATGGTCACCATCCCC
GACGAGTACGCCGAGGGCGCGCTCGGCGGCGGCGGCGGCGGCGGTGGTCC
GGGCGGCGGCGGCGGCGGTGGCTACGGTCCGGGCGGCGGTGGCGGCGGCG
GATACGGTCCTGGCGGCGGCGGAGGCGGCGGCGGCGGCTTCGGTCCTGGC
GGCGGCGGTGGTCCCGGCGGTGGTGGGCCGGGCGGCCGAGGTCCGGGCGC
TGGCGGTGGTAACGCGCCTGGCGCCGCCGGCGCTGTTGCTGCAGCGGCAG
CCGCGCGGAAGAATCAGGCCGCGAACGGACCAACGCCCAAGGCGCCGGGA
GCACCAGGCGCTCCAGGCGCGCCGGGCACTCCGGCGGTGCCGAAGGCGCC
GGTGGGCCAGGTCGCCGGCAAGGACAATGCTGCGCGCGGACGTCAGAAGA
AACCACTTCATTGGGCAAAGGTGCCCATGAATCTGGTCAACCAGTCGTTC
TGGCCGTCGTTGGATGAGAGCAATGTGCGATTGGACGAGGAGGAGATTGA
TGACTTGTTCGGCGTGGACGTTGTGGAGAGATTCCAGATTGCGGCCGCGG
AGGTGAAGCCGGAAGTGTTGCCGCACAAGCGCAAGCATAACGTTAATATC
TTGCTGGCCAACTTGAAGATGAGCGCCGAGCATATTAAGGACGTCGTTCG
GGTCCCGACGTACAAGGAGATGGAGGCAGGCACCTTGCAAGCTTTGCTGC
TTGTTTGCCCCACCCAGGAGGAAGAGATGTTGCTGGCACAGAATGCCAAC
ATCCGCGCAGAGGTTGACAAGACTGATGCCTTTATGATGGACCTGGCCGA
CCTCAAGGGGCTCCGTGGCAAGATCCTTTGCGCTCTGGCGGCGAAGACGT
TCAACGACGAGGCTGTGGACGTCATTCGCAACATGGATACTTTTGCCATG
ATTCCTGTGGAGGTTATGAACTCTGAGAAGCTTGCACGTATTTTGGAGGC
CGTGCTGGCGTTGGGAAATTTCCTCAACTCTGGTACTGGTCGTGGTGGTG
CTCATGGTTTCAAGTTGGAGGCTTTGGCCATGTTGAGTACGGTGAAGGAC
GCTAAGGGAAACGCTTTACTGGATTATCTCATCTTCATGCTTGAGAGGGA
CAACCCAGGGCTCTTGCCTTTGGATGACATGCCGACTTTGGCGAGATCAA
AGGAGCTTTCCCTGGAAGCCATTGGAGAAGAAGTACAAGCCTTGCTTGAG
TCGGTAACCAATGTGTCAGAACAAATCAAACAAATCGGTGAGGATCAGAC
GCTTGCAGCATTCAAGGCTGAGATGGAAGTTTTCGCAGAAGAGGCCACCA
AGGTGCGGGAAGAGATTGTGTCGTTACGAGGTTTGATGATGCAAAAGCTG
CAGAGCATGATGCAACACTTTGGTGAGAGAAACAAGATGTCGCGCGGAAG
ACAAGAAGATGTGCTGCGAATGTTGAGAGAATTCTCAGAGGAAATCGTTA
ATGGGCTCGCACGAGCGAAGGAGAGAAACGAGAGGATGAGAAAACAGGCC
GCCAAGAATGACGCCAAGAAGGTAGGTAACGTTGGCGGCGCGAACTCCGG
CGTCGGTGCTGGGCCTGAGGTTATCACGGGCGATCTTAGCAACATGCTTG
GAAGCGCGGACGCGGGTGTTGAAGCGGGCGGCGGGGACGATGGGGGTGGT
GAGGACTAA
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protein sequence of Gvermi12925.t1

>Gvermi12925.t1 ID=Gvermi12925.t1|Name=Gvermi12925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=653bp
MSRKYDARSTLEDRLGPDVLVRLQSMAHEFVRFERGQFGFYIDPARYAVK
QRQVGPLGRGRRRKVVAGVDKDGNIITAWIGIESRSKGARTQGGEMVTIP
DEYAEGALGGGGGGGGPGGGGGGGYGPGGGGGGGYGPGGGGGGGGGFGPG
GGGGPGGGGPGGRGPGAGGGNAPGAAGAVAAAAAARKNQAANGPTPKAPG
APGAPGAPGTPAVPKAPVGQVAGKDNAARGRQKKPLHWAKVPMNLVNQSF
WPSLDESNVRLDEEEIDDLFGVDVVERFQIAAAEVKPEVLPHKRKHNVNI
LLANLKMSAEHIKDVVRVPTYKEMEAGTLQALLLVCPTQEEEMLLAQNAN
IRAEVDKTDAFMMDLADLKGLRGKILCALAAKTFNDEAVDVIRNMDTFAM
IPVEVMNSEKLARILEAVLALGNFLNSGTGRGGAHGFKLEALAMLSTVKD
AKGNALLDYLIFMLERDNPGLLPLDDMPTLARSKELSLEAIGEEVQALLE
SVTNVSEQIKQIGEDQTLAAFKAEMEVFAEEATKVREEIVSLRGLMMQKL
QSMMQHFGERNKMSRGRQEDVLRMLREFSEEIVNGLARAKERNERMRKQA
AKNDAKKVGNVGGANSGVGAGPEVITGDLSNMLGSADAGVEAGGGDDGGG
ED*
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mRNA from alignment at ScGOVlb_425:2136093..2138158-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12925.t1 ID=Gvermi12925.t1|Name=Gvermi12925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2066bp|location=Sequence derived from alignment at ScGOVlb_425:2136093..2138158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCAAGTACGACGCACGCTCCACGCTTGAGGACCGCCTCGGCCC
CGACGTGCTGGTCAGGCTGCAGAGCATGGCTCATGAGTTCGGTAAGTTCG
CCCACCCCCGCCCCCCGTCGCGCCCCCGCCCGCGCCGCCCGCCCACGCTC
ACCGCCGTCGTCCTCCCCACCTTCTTCCCCCGCGCCGCGCGCGCGCAGTG
CGTTTTGAGCGAGGCCAGTTCGGCTTCTACATCGATCCGGCACGCTACGC
CGTCAAGCAGCGACAGGTCGGCCCGCTGGGCCGCGGGCGTCGCCGCAAGG
TCGTGGCCGGCGTCGACAAGGATGGAAACATTATCACCGCATGGATCGGC
ATCGAATCGCGCTCCAAGGGCGCGCGCACGCAGGGCGGCGAGATGGTCAC
CATCCCCGACGAGTACGCCGAGGGCGCGCTCGGCGGCGGCGGCGGCGGCG
GTGGTCCGGGCGGCGGCGGCGGCGGTGGCTACGGTCCGGGCGGCGGTGGC
GGCGGCGGATACGGTCCTGGCGGCGGCGGAGGCGGCGGCGGCGGCTTCGG
TCCTGGCGGCGGCGGTGGTCCCGGCGGTGGTGGGCCGGGCGGCCGAGGTC
CGGGCGCTGGCGGTGGTAACGCGCCTGGCGCCGCCGGCGCTGTTGCTGCA
GCGGCAGCCGCGCGGAAGAATCAGGCCGCGAACGGACCAACGCCCAAGGC
GCCGGGAGCACCAGGCGCTCCAGGCGCGCCGGGCACTCCGGCGGTGCCGA
AGGCGCCGGTGGGCCAGGTCGCCGGCAAGGACAATGCTGCGCGCGGACGT
CAGAAGAAACCACTTCATTGGGCAAAGGTGCCCATGAATCTGGTCAACCA
GTCGTTCTGGCCGTCGTTGGATGAGAGCAATGTGCGATTGGACGAGGAGG
AGATTGATGACTTGTTCGGCGTGGACGTTGTGGAGAGATTCCAGATTGCG
GCCGCGGAGGTGAAGCCGGAAGTGTTGCCGCACAAGCGCAAGCATAACGT
TAATATCTTGCTGGCCAACTTGAAGATGAGCGCCGAGCATATTAAGGACG
TCGTTCGGGTCCCGACGTACAAGGAGATGGAGGCAGGCACCTTGCAAGCT
TTGCTGCTTGTTTGCCCCACCCAGGAGGAAGAGATGTTGCTGGCACAGAA
TGCCAACATCCGCGCAGAGGTTGACAAGACTGATGCCTTTATGATGGACC
TGGCCGACCTCAAGGGGCTCCGTGGCAAGATCCTTTGCGCTCTGGCGGCG
AAGACGTTCAACGACGAGGCTGTGGACGTCATTCGCAACATGGATACTTT
TGCCATGATTCCTGTGGAGGTTATGAACTCTGAGAAGCTTGCACGTATTT
TGGAGGCCGTGCTGGCGTTGGGAAATTTCCTCAACTCTGGTACTGGTCGT
GGTGGTGCTCATGGTTTCAAGTTGGAGGCTTTGGCCATGTTGAGTACGGT
GAAGGACGCTAAGGGAAACGCTTTACTGGATTATCTCATCTTCATGCTTG
AGAGGGACAACCCAGGGCTCTTGCCTTTGGATGACATGCCGACTTTGGCG
AGATCAAAGGAGCTTTCCCTGGAAGCCATTGGAGAAGAAGTACAAGCCTT
GCTTGAGTCGGTAACCAATGTGTCAGAACAAATCAAACAAATCGGTGAGG
ATCAGACGCTTGCAGCATTCAAGGCTGAGATGGAAGTTTTCGCAGAAGAG
GCCACCAAGGTGCGGGAAGAGATTGTGTCGTTACGAGGTTTGATGATGCA
AAAGCTGCAGAGCATGATGCAACACTTTGGTGAGAGAAACAAGATGTCGC
GCGGAAGACAAGAAGATGTGCTGCGAATGTTGAGAGAATTCTCAGAGGAA
ATCGTTAATGGGCTCGCACGAGCGAAGGAGAGAAACGAGAGGATGAGAAA
ACAGGCCGCCAAGAATGACGCCAAGAAGGTAGGTAACGTTGGCGGCGCGA
ACTCCGGCGTCGGTGCTGGGCCTGAGGTTATCACGGGCGATCTTAGCAAC
ATGCTTGGAAGCGCGGACGCGGGTGTTGAAGCGGGCGGCGGGGACGATGG
GGGTGGTGAGGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2136093..2138158-

>Gvermi12925.t1 ID=Gvermi12925.t1|Name=Gvermi12925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1959bp|location=Sequence derived from alignment at ScGOVlb_425:2136093..2138158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCAAGTACGACGCACGCTCCACGCTTGAGGACCGCCTCGGCCC
CGACGTGCTGGTCAGGCTGCAGAGCATGGCTCATGAGTTCGTGCGTTTTG
AGCGAGGCCAGTTCGGCTTCTACATCGATCCGGCACGCTACGCCGTCAAG
CAGCGACAGGTCGGCCCGCTGGGCCGCGGGCGTCGCCGCAAGGTCGTGGC
CGGCGTCGACAAGGATGGAAACATTATCACCGCATGGATCGGCATCGAAT
CGCGCTCCAAGGGCGCGCGCACGCAGGGCGGCGAGATGGTCACCATCCCC
GACGAGTACGCCGAGGGCGCGCTCGGCGGCGGCGGCGGCGGCGGTGGTCC
GGGCGGCGGCGGCGGCGGTGGCTACGGTCCGGGCGGCGGTGGCGGCGGCG
GATACGGTCCTGGCGGCGGCGGAGGCGGCGGCGGCGGCTTCGGTCCTGGC
GGCGGCGGTGGTCCCGGCGGTGGTGGGCCGGGCGGCCGAGGTCCGGGCGC
TGGCGGTGGTAACGCGCCTGGCGCCGCCGGCGCTGTTGCTGCAGCGGCAG
CCGCGCGGAAGAATCAGGCCGCGAACGGACCAACGCCCAAGGCGCCGGGA
GCACCAGGCGCTCCAGGCGCGCCGGGCACTCCGGCGGTGCCGAAGGCGCC
GGTGGGCCAGGTCGCCGGCAAGGACAATGCTGCGCGCGGACGTCAGAAGA
AACCACTTCATTGGGCAAAGGTGCCCATGAATCTGGTCAACCAGTCGTTC
TGGCCGTCGTTGGATGAGAGCAATGTGCGATTGGACGAGGAGGAGATTGA
TGACTTGTTCGGCGTGGACGTTGTGGAGAGATTCCAGATTGCGGCCGCGG
AGGTGAAGCCGGAAGTGTTGCCGCACAAGCGCAAGCATAACGTTAATATC
TTGCTGGCCAACTTGAAGATGAGCGCCGAGCATATTAAGGACGTCGTTCG
GGTCCCGACGTACAAGGAGATGGAGGCAGGCACCTTGCAAGCTTTGCTGC
TTGTTTGCCCCACCCAGGAGGAAGAGATGTTGCTGGCACAGAATGCCAAC
ATCCGCGCAGAGGTTGACAAGACTGATGCCTTTATGATGGACCTGGCCGA
CCTCAAGGGGCTCCGTGGCAAGATCCTTTGCGCTCTGGCGGCGAAGACGT
TCAACGACGAGGCTGTGGACGTCATTCGCAACATGGATACTTTTGCCATG
ATTCCTGTGGAGGTTATGAACTCTGAGAAGCTTGCACGTATTTTGGAGGC
CGTGCTGGCGTTGGGAAATTTCCTCAACTCTGGTACTGGTCGTGGTGGTG
CTCATGGTTTCAAGTTGGAGGCTTTGGCCATGTTGAGTACGGTGAAGGAC
GCTAAGGGAAACGCTTTACTGGATTATCTCATCTTCATGCTTGAGAGGGA
CAACCCAGGGCTCTTGCCTTTGGATGACATGCCGACTTTGGCGAGATCAA
AGGAGCTTTCCCTGGAAGCCATTGGAGAAGAAGTACAAGCCTTGCTTGAG
TCGGTAACCAATGTGTCAGAACAAATCAAACAAATCGGTGAGGATCAGAC
GCTTGCAGCATTCAAGGCTGAGATGGAAGTTTTCGCAGAAGAGGCCACCA
AGGTGCGGGAAGAGATTGTGTCGTTACGAGGTTTGATGATGCAAAAGCTG
CAGAGCATGATGCAACACTTTGGTGAGAGAAACAAGATGTCGCGCGGAAG
ACAAGAAGATGTGCTGCGAATGTTGAGAGAATTCTCAGAGGAAATCGTTA
ATGGGCTCGCACGAGCGAAGGAGAGAAACGAGAGGATGAGAAAACAGGCC
GCCAAGAATGACGCCAAGAAGGTAGGTAACGTTGGCGGCGCGAACTCCGG
CGTCGGTGCTGGGCCTGAGGTTATCACGGGCGATCTTAGCAACATGCTTG
GAAGCGCGGACGCGGGTGTTGAAGCGGGCGGCGGGGACGATGGGGGTGGT
GAGGACTAA
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