Gvermi12826.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12826.t1
Unique NameGvermi12826.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1709132..1710217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12826Gvermi12826Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1709132..1710217 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12826.t1.start1Gvermi12826.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1709132..1709134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12826.t1.CDS1Gvermi12826.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1709132..1710217 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12826.t1.exon1Gvermi12826.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1709132..1710217 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12826.t1.stop1Gvermi12826.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1710215..1710217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12826.t1Gvermi12826.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1709132..1710217 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12826.t1 ID=Gvermi12826.t1|Name=Gvermi12826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp
LFLLSPNTAVVALHAIPPHRQHPLWVAGAEAYVTSVCEDADLALLQLDKP
LLHNFSASFTSPRKNSVCFALSPALSRLRLKFLRVESAIIVYSASRLPVF
AFSASTSVLHGWSGSPVVTAQNELVGVLIQARQNVVHVVPSRFVQLLQHS
RHTLALGYVPALHVQSGPSQSRKVLVQRNVDEMRKGDIVVQIGSQHVHGG
FVRWQGLWAPPQAAVVQLFGTQVRLRVLRQQEPKTVCVSVRRATEACAAI
GRHDGICVLAGPYKFSALSIEMLESFGPRWQIKAPRPLVMAAMSDGDGYR
VVVVSRAPDSRCNLLFQKVQFLNDEVVKSVEQLALGGVISFESGETLTLP
SATVRRCANPL*
back to top

spliced messenger RNA

>Gvermi12826.t1 ID=Gvermi12826.t1|Name=Gvermi12826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_425:1709132..1710217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTCCTGCTTTCCCCAAACACAGCTGTCGTCGCCTTGCACGCCATTCC
TCCCCACCGCCAGCACCCGTTGTGGGTAGCTGGTGCGGAAGCATATGTGA
CCTCTGTGTGTGAAGATGCAGACCTTGCTCTGCTTCAGCTCGACAAGCCT
CTTCTCCACAATTTCTCAGCTTCCTTCACTTCCCCCCGAAAAAACAGCGT
TTGTTTCGCTCTGTCACCGGCGCTGTCCCGCTTGCGACTGAAATTTCTGC
GTGTCGAAAGCGCTATCATTGTCTACAGCGCATCCAGGCTTCCAGTGTTT
GCGTTTTCTGCCTCGACATCAGTGCTTCACGGGTGGTCCGGTTCGCCGGT
TGTTACTGCGCAAAACGAACTTGTCGGCGTTCTGATACAAGCTCGGCAAA
ACGTTGTGCACGTAGTTCCTTCTCGGTTCGTTCAGCTGCTTCAACATTCT
CGCCACACGTTGGCTTTGGGATACGTTCCAGCATTACATGTTCAGTCTGG
CCCCTCGCAGTCACGGAAAGTTCTTGTTCAACGAAACGTAGATGAAATGA
GAAAAGGCGATATTGTTGTGCAGATCGGCAGCCAACACGTGCACGGGGGC
TTTGTTAGATGGCAAGGTTTGTGGGCCCCACCTCAAGCGGCAGTGGTCCA
ATTGTTCGGCACCCAAGTGAGACTCAGGGTTCTACGTCAACAAGAGCCAA
AAACTGTCTGCGTGTCGGTGCGCCGTGCCACAGAAGCGTGCGCCGCTATC
GGAAGACACGACGGAATATGTGTTCTTGCCGGCCCGTACAAGTTTTCTGC
CCTTTCCATCGAGATGCTGGAGTCCTTTGGTCCTCGATGGCAAATCAAAG
CACCTAGACCATTGGTTATGGCAGCAATGAGCGACGGGGATGGCTACAGA
GTTGTAGTAGTTTCGAGAGCGCCCGACTCCCGTTGCAATCTTTTGTTTCA
AAAGGTTCAGTTCTTGAATGATGAAGTGGTCAAGTCGGTTGAACAACTTG
CTCTTGGTGGCGTTATCTCCTTCGAGAGTGGAGAAACTCTTACTCTTCCA
TCCGCTACTGTCAGAAGATGTGCTAATCCTTTGTAG
back to top

protein sequence of Gvermi12826.t1

>Gvermi12826.t1 ID=Gvermi12826.t1|Name=Gvermi12826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=362bp
LFLLSPNTAVVALHAIPPHRQHPLWVAGAEAYVTSVCEDADLALLQLDKP
LLHNFSASFTSPRKNSVCFALSPALSRLRLKFLRVESAIIVYSASRLPVF
AFSASTSVLHGWSGSPVVTAQNELVGVLIQARQNVVHVVPSRFVQLLQHS
RHTLALGYVPALHVQSGPSQSRKVLVQRNVDEMRKGDIVVQIGSQHVHGG
FVRWQGLWAPPQAAVVQLFGTQVRLRVLRQQEPKTVCVSVRRATEACAAI
GRHDGICVLAGPYKFSALSIEMLESFGPRWQIKAPRPLVMAAMSDGDGYR
VVVVSRAPDSRCNLLFQKVQFLNDEVVKSVEQLALGGVISFESGETLTLP
SATVRRCANPL*
back to top

mRNA from alignment at ScGOVlb_425:1709132..1710217+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12826.t1 ID=Gvermi12826.t1|Name=Gvermi12826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_425:1709132..1710217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTTCCTGCTTTCCCCAAACACAGCTGTCGTCGCCTTGCACGCCATTCC
TCCCCACCGCCAGCACCCGTTGTGGGTAGCTGGTGCGGAAGCATATGTGA
CCTCTGTGTGTGAAGATGCAGACCTTGCTCTGCTTCAGCTCGACAAGCCT
CTTCTCCACAATTTCTCAGCTTCCTTCACTTCCCCCCGAAAAAACAGCGT
TTGTTTCGCTCTGTCACCGGCGCTGTCCCGCTTGCGACTGAAATTTCTGC
GTGTCGAAAGCGCTATCATTGTCTACAGCGCATCCAGGCTTCCAGTGTTT
GCGTTTTCTGCCTCGACATCAGTGCTTCACGGGTGGTCCGGTTCGCCGGT
TGTTACTGCGCAAAACGAACTTGTCGGCGTTCTGATACAAGCTCGGCAAA
ACGTTGTGCACGTAGTTCCTTCTCGGTTCGTTCAGCTGCTTCAACATTCT
CGCCACACGTTGGCTTTGGGATACGTTCCAGCATTACATGTTCAGTCTGG
CCCCTCGCAGTCACGGAAAGTTCTTGTTCAACGAAACGTAGATGAAATGA
GAAAAGGCGATATTGTTGTGCAGATCGGCAGCCAACACGTGCACGGGGGC
TTTGTTAGATGGCAAGGTTTGTGGGCCCCACCTCAAGCGGCAGTGGTCCA
ATTGTTCGGCACCCAAGTGAGACTCAGGGTTCTACGTCAACAAGAGCCAA
AAACTGTCTGCGTGTCGGTGCGCCGTGCCACAGAAGCGTGCGCCGCTATC
GGAAGACACGACGGAATATGTGTTCTTGCCGGCCCGTACAAGTTTTCTGC
CCTTTCCATCGAGATGCTGGAGTCCTTTGGTCCTCGATGGCAAATCAAAG
CACCTAGACCATTGGTTATGGCAGCAATGAGCGACGGGGATGGCTACAGA
GTTGTAGTAGTTTCGAGAGCGCCCGACTCCCGTTGCAATCTTTTGTTTCA
AAAGGTTCAGTTCTTGAATGATGAAGTGGTCAAGTCGGTTGAACAACTTG
CTCTTGGTGGCGTTATCTCCTTCGAGAGTGGAGAAACTCTTACTCTTCCA
TCCGCTACTGTCAGAAGATGTGCTAATCCTTTGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1709132..1710217+

>Gvermi12826.t1 ID=Gvermi12826.t1|Name=Gvermi12826.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1086bp|location=Sequence derived from alignment at ScGOVlb_425:1709132..1710217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTTCCTGCTTTCCCCAAACACAGCTGTCGTCGCCTTGCACGCCATTCC
TCCCCACCGCCAGCACCCGTTGTGGGTAGCTGGTGCGGAAGCATATGTGA
CCTCTGTGTGTGAAGATGCAGACCTTGCTCTGCTTCAGCTCGACAAGCCT
CTTCTCCACAATTTCTCAGCTTCCTTCACTTCCCCCCGAAAAAACAGCGT
TTGTTTCGCTCTGTCACCGGCGCTGTCCCGCTTGCGACTGAAATTTCTGC
GTGTCGAAAGCGCTATCATTGTCTACAGCGCATCCAGGCTTCCAGTGTTT
GCGTTTTCTGCCTCGACATCAGTGCTTCACGGGTGGTCCGGTTCGCCGGT
TGTTACTGCGCAAAACGAACTTGTCGGCGTTCTGATACAAGCTCGGCAAA
ACGTTGTGCACGTAGTTCCTTCTCGGTTCGTTCAGCTGCTTCAACATTCT
CGCCACACGTTGGCTTTGGGATACGTTCCAGCATTACATGTTCAGTCTGG
CCCCTCGCAGTCACGGAAAGTTCTTGTTCAACGAAACGTAGATGAAATGA
GAAAAGGCGATATTGTTGTGCAGATCGGCAGCCAACACGTGCACGGGGGC
TTTGTTAGATGGCAAGGTTTGTGGGCCCCACCTCAAGCGGCAGTGGTCCA
ATTGTTCGGCACCCAAGTGAGACTCAGGGTTCTACGTCAACAAGAGCCAA
AAACTGTCTGCGTGTCGGTGCGCCGTGCCACAGAAGCGTGCGCCGCTATC
GGAAGACACGACGGAATATGTGTTCTTGCCGGCCCGTACAAGTTTTCTGC
CCTTTCCATCGAGATGCTGGAGTCCTTTGGTCCTCGATGGCAAATCAAAG
CACCTAGACCATTGGTTATGGCAGCAATGAGCGACGGGGATGGCTACAGA
GTTGTAGTAGTTTCGAGAGCGCCCGACTCCCGTTGCAATCTTTTGTTTCA
AAAGGTTCAGTTCTTGAATGATGAAGTGGTCAAGTCGGTTGAACAACTTG
CTCTTGGTGGCGTTATCTCCTTCGAGAGTGGAGAAACTCTTACTCTTCCA
TCCGCTACTGTCAGAAGATGTGCTAATCCTTTGTAG
back to top