Gvermi12906.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12906.t1
Unique NameGvermi12906.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2002407..2003429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT467CT
Preferred nameSLC35C1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15279
KEGG TC2.A.7.16
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005342,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015075,GO:0015318,GO:0015605,GO:0015711,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015780,GO:0015783,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0034220,GO:0035436,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0046942,GO:0046943,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071917,GO:0089721,GO:0089722,GO:0090480,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903825,GO:1905039,GO:1990536
Evalue2.67e-129
EggNOG OGsKOG1442@1|root,KOG1442@2759|Eukaryota
DescriptionGDP-fucose import into Golgi lumen
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12906Gvermi12906Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2002407..2003429 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12906.t1.start1Gvermi12906.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2002407..2002409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12906.t1.CDS1Gvermi12906.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2002407..2003429 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12906.t1.exon1Gvermi12906.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2002407..2003429 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12906.t1.stop1Gvermi12906.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2003427..2003429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12906.t1Gvermi12906.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2002407..2003429 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12906.t1 ID=Gvermi12906.t1|Name=Gvermi12906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=341bp
MAKSVTSAAMHAVFFAVAFYWFISITMVFVNKALLSDPEGKLDAPLFITW
FQCVVTVIGCFVLGELGIANVPKFELKKDVLRQMLPLSCVFTMMMVCNNL
CLKFVEISFYQVARSLTIVFNVIFDFIILGQRTSLPATLCCALVVSGFLV
GNQNEMRWSLQGVLFGVAASFFVAMNAIYVKKKFPIVDNNPWKLTLYNNV
NASIIFIPLIFCFGEPQIILMSENILKLKFWLMMFTGGVFGICISFAVAA
QIKYTSPLTHNVSATAKAAAQTVLGLIVYRNPINIWGAASVAVILVGSLF
YTLVRRSEMKKKLAAQEAQASKVSEDNRPLLADGDAKETQ*
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spliced messenger RNA

>Gvermi12906.t1 ID=Gvermi12906.t1|Name=Gvermi12906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_425:2002407..2003429+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAGAGTGTTACGTCGGCGGCGATGCACGCCGTCTTCTTCGCCGT
TGCTTTTTATTGGTTTATCAGTATTACAATGGTGTTTGTGAACAAAGCCC
TTCTGTCCGATCCTGAAGGGAAGCTTGACGCACCGTTATTCATAACGTGG
TTCCAATGTGTCGTGACTGTAATAGGGTGCTTCGTATTGGGCGAGTTGGG
TATTGCTAATGTGCCGAAATTCGAACTCAAGAAGGACGTCCTCAGGCAGA
TGCTCCCGCTGTCATGCGTCTTCACCATGATGATGGTTTGCAACAACCTT
TGCCTCAAATTTGTTGAGATTTCATTTTATCAGGTGGCTCGTTCCCTCAC
CATCGTTTTCAATGTCATCTTCGACTTCATAATTCTCGGTCAGCGCACGT
CTCTTCCGGCCACTCTTTGCTGTGCATTGGTGGTCTCGGGCTTCCTAGTC
GGCAATCAAAACGAGATGCGATGGTCTTTACAAGGAGTTCTATTTGGCGT
GGCGGCCAGTTTCTTTGTGGCTATGAATGCCATCTATGTGAAGAAAAAGT
TTCCAATTGTGGACAACAATCCATGGAAGCTCACGTTGTACAACAATGTG
AACGCGTCCATCATCTTCATTCCGCTCATTTTCTGCTTCGGGGAGCCGCA
AATAATCCTCATGTCAGAGAACATTCTCAAACTCAAGTTCTGGCTCATGA
TGTTTACCGGAGGCGTTTTTGGTATTTGCATATCGTTTGCCGTGGCTGCT
CAGATCAAATATACATCACCACTTACTCACAATGTTTCTGCTACCGCTAA
GGCGGCAGCTCAGACAGTTTTGGGACTCATCGTTTACAGGAATCCGATTA
ATATATGGGGCGCCGCTAGCGTCGCTGTGATTTTGGTTGGTTCTTTGTTT
TATACTCTGGTCAGAAGATCAGAAATGAAAAAGAAGCTAGCAGCACAGGA
AGCTCAGGCCTCCAAAGTTTCTGAGGACAACCGGCCCTTGCTCGCAGACG
GAGATGCCAAAGAAACCCAATAG
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protein sequence of Gvermi12906.t1

>Gvermi12906.t1 ID=Gvermi12906.t1|Name=Gvermi12906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=341bp
MAKSVTSAAMHAVFFAVAFYWFISITMVFVNKALLSDPEGKLDAPLFITW
FQCVVTVIGCFVLGELGIANVPKFELKKDVLRQMLPLSCVFTMMMVCNNL
CLKFVEISFYQVARSLTIVFNVIFDFIILGQRTSLPATLCCALVVSGFLV
GNQNEMRWSLQGVLFGVAASFFVAMNAIYVKKKFPIVDNNPWKLTLYNNV
NASIIFIPLIFCFGEPQIILMSENILKLKFWLMMFTGGVFGICISFAVAA
QIKYTSPLTHNVSATAKAAAQTVLGLIVYRNPINIWGAASVAVILVGSLF
YTLVRRSEMKKKLAAQEAQASKVSEDNRPLLADGDAKETQ*
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mRNA from alignment at ScGOVlb_425:2002407..2003429+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12906.t1 ID=Gvermi12906.t1|Name=Gvermi12906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_425:2002407..2003429+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAAGAGTGTTACGTCGGCGGCGATGCACGCCGTCTTCTTCGCCGT
TGCTTTTTATTGGTTTATCAGTATTACAATGGTGTTTGTGAACAAAGCCC
TTCTGTCCGATCCTGAAGGGAAGCTTGACGCACCGTTATTCATAACGTGG
TTCCAATGTGTCGTGACTGTAATAGGGTGCTTCGTATTGGGCGAGTTGGG
TATTGCTAATGTGCCGAAATTCGAACTCAAGAAGGACGTCCTCAGGCAGA
TGCTCCCGCTGTCATGCGTCTTCACCATGATGATGGTTTGCAACAACCTT
TGCCTCAAATTTGTTGAGATTTCATTTTATCAGGTGGCTCGTTCCCTCAC
CATCGTTTTCAATGTCATCTTCGACTTCATAATTCTCGGTCAGCGCACGT
CTCTTCCGGCCACTCTTTGCTGTGCATTGGTGGTCTCGGGCTTCCTAGTC
GGCAATCAAAACGAGATGCGATGGTCTTTACAAGGAGTTCTATTTGGCGT
GGCGGCCAGTTTCTTTGTGGCTATGAATGCCATCTATGTGAAGAAAAAGT
TTCCAATTGTGGACAACAATCCATGGAAGCTCACGTTGTACAACAATGTG
AACGCGTCCATCATCTTCATTCCGCTCATTTTCTGCTTCGGGGAGCCGCA
AATAATCCTCATGTCAGAGAACATTCTCAAACTCAAGTTCTGGCTCATGA
TGTTTACCGGAGGCGTTTTTGGTATTTGCATATCGTTTGCCGTGGCTGCT
CAGATCAAATATACATCACCACTTACTCACAATGTTTCTGCTACCGCTAA
GGCGGCAGCTCAGACAGTTTTGGGACTCATCGTTTACAGGAATCCGATTA
ATATATGGGGCGCCGCTAGCGTCGCTGTGATTTTGGTTGGTTCTTTGTTT
TATACTCTGGTCAGAAGATCAGAAATGAAAAAGAAGCTAGCAGCACAGGA
AGCTCAGGCCTCCAAAGTTTCTGAGGACAACCGGCCCTTGCTCGCAGACG
GAGATGCCAAAGAAACCCAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2002407..2003429+

>Gvermi12906.t1 ID=Gvermi12906.t1|Name=Gvermi12906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1023bp|location=Sequence derived from alignment at ScGOVlb_425:2002407..2003429+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAAGAGTGTTACGTCGGCGGCGATGCACGCCGTCTTCTTCGCCGT
TGCTTTTTATTGGTTTATCAGTATTACAATGGTGTTTGTGAACAAAGCCC
TTCTGTCCGATCCTGAAGGGAAGCTTGACGCACCGTTATTCATAACGTGG
TTCCAATGTGTCGTGACTGTAATAGGGTGCTTCGTATTGGGCGAGTTGGG
TATTGCTAATGTGCCGAAATTCGAACTCAAGAAGGACGTCCTCAGGCAGA
TGCTCCCGCTGTCATGCGTCTTCACCATGATGATGGTTTGCAACAACCTT
TGCCTCAAATTTGTTGAGATTTCATTTTATCAGGTGGCTCGTTCCCTCAC
CATCGTTTTCAATGTCATCTTCGACTTCATAATTCTCGGTCAGCGCACGT
CTCTTCCGGCCACTCTTTGCTGTGCATTGGTGGTCTCGGGCTTCCTAGTC
GGCAATCAAAACGAGATGCGATGGTCTTTACAAGGAGTTCTATTTGGCGT
GGCGGCCAGTTTCTTTGTGGCTATGAATGCCATCTATGTGAAGAAAAAGT
TTCCAATTGTGGACAACAATCCATGGAAGCTCACGTTGTACAACAATGTG
AACGCGTCCATCATCTTCATTCCGCTCATTTTCTGCTTCGGGGAGCCGCA
AATAATCCTCATGTCAGAGAACATTCTCAAACTCAAGTTCTGGCTCATGA
TGTTTACCGGAGGCGTTTTTGGTATTTGCATATCGTTTGCCGTGGCTGCT
CAGATCAAATATACATCACCACTTACTCACAATGTTTCTGCTACCGCTAA
GGCGGCAGCTCAGACAGTTTTGGGACTCATCGTTTACAGGAATCCGATTA
ATATATGGGGCGCCGCTAGCGTCGCTGTGATTTTGGTTGGTTCTTTGTTT
TATACTCTGGTCAGAAGATCAGAAATGAAAAAGAAGCTAGCAGCACAGGA
AGCTCAGGCCTCCAAAGTTTCTGAGGACAACCGGCCCTTGCTCGCAGACG
GAGATGCCAAAGAAACCCAATAG
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