Gvermi12869.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12869.t1
Unique Name	Gvermi12869.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1857219..1858112 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI29739
Max annot lvl	2759\|Eukaryota
Evalue	0.000352
EggNOG OGs	2E2G0@1\|root,2S9PT@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12869	Gvermi12869	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1857219..1858112 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12869.t1.start1	Gvermi12869.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1857219..1857221 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12869.t1.CDS1	Gvermi12869.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1857219..1858112 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12869.t1.exon1	Gvermi12869.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1857219..1858112 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12869.t1.stop1	Gvermi12869.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1858110..1858112 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12869.t1	Gvermi12869.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1857219..1858112 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1857219..1858112+
coding sequence from alignment at ScGOVlb_425:1857219..1858112+

mRNA sequence

>Gvermi12869.t1 ID=Gvermi12869.t1|Name=Gvermi12869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=298bp
MKKSPPASQISSRNSEIQAQSNVFSSNNQKQTQHKTSRNQGALVARQAKR
QKRFRFTDPYDLFLLRAVLKEDAHLSKWGELEATYRKVLEAFAKHIPSTA
FLHMNRPSTKTLIDRVNRLISMRRAAIKKNVAVSGTTEEFGEKESLLDDL
ILQIDEKAETIGDTKEERNENEQKLVRAGECIRQKAHKSASKTDESDSHE
SLQSKKRPKKRRKRSPVAGSDDAFKTFLFEQAKEKQRLDAERVKLERERL
EIQQKESLRRLELEEKRFELEKRERMQAMEERSKLLRIMDHLSRKLQ*

spliced messenger RNA

>Gvermi12869.t1 ID=Gvermi12869.t1|Name=Gvermi12869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=894bp|location=Sequence derived from alignment at ScGOVlb_425:1857219..1858112+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGTCTCCGCCAGCATCACAGATTTCATCACGGAATTCAGAAAT
CCAGGCGCAAAGTAACGTTTTTTCTTCAAATAATCAGAAACAAACTCAGC
ATAAAACTAGTCGTAACCAAGGAGCGCTCGTCGCACGACAAGCTAAGCGA
CAGAAACGATTTCGCTTCACAGACCCGTATGACCTATTTCTTCTGCGCGC
TGTACTAAAGGAAGATGCTCACCTATCAAAATGGGGCGAGCTTGAAGCAA
CGTATAGAAAGGTGCTTGAAGCATTTGCAAAACATATTCCGTCAACCGCG
TTTCTGCATATGAATCGTCCGTCTACAAAAACACTCATTGATCGCGTCAA
TAGGCTAATAAGTATGCGACGAGCTGCAATAAAGAAAAATGTTGCGGTTT
CTGGAACCACAGAAGAATTTGGGGAGAAAGAATCATTGCTGGATGATCTG
ATATTGCAAATAGACGAAAAAGCCGAAACGATAGGGGATACGAAAGAAGA
GCGAAATGAAAACGAACAAAAACTGGTACGCGCGGGAGAGTGTATCAGGC
AGAAAGCTCATAAAAGTGCAAGCAAAACAGATGAGAGTGACAGCCACGAG
AGCCTACAGTCGAAGAAACGTCCGAAGAAGCGTAGAAAGAGATCACCAGT
AGCTGGCTCTGATGATGCATTCAAAACGTTTTTATTCGAGCAAGCAAAAG
AAAAACAACGTTTGGATGCAGAGCGCGTGAAACTTGAGCGTGAACGATTG
GAAATACAGCAAAAAGAATCTTTGCGCCGCTTAGAGCTCGAAGAAAAACG
CTTCGAGCTGGAAAAGCGAGAGCGTATGCAAGCTATGGAAGAACGTAGTA
AGCTTCTTCGCATAATGGACCACTTGAGTCGAAAGTTACAGTAA

protein sequence of Gvermi12869.t1

>Gvermi12869.t1 ID=Gvermi12869.t1|Name=Gvermi12869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=298bp
MKKSPPASQISSRNSEIQAQSNVFSSNNQKQTQHKTSRNQGALVARQAKR
QKRFRFTDPYDLFLLRAVLKEDAHLSKWGELEATYRKVLEAFAKHIPSTA
FLHMNRPSTKTLIDRVNRLISMRRAAIKKNVAVSGTTEEFGEKESLLDDL
ILQIDEKAETIGDTKEERNENEQKLVRAGECIRQKAHKSASKTDESDSHE
SLQSKKRPKKRRKRSPVAGSDDAFKTFLFEQAKEKQRLDAERVKLERERL
EIQQKESLRRLELEEKRFELEKRERMQAMEERSKLLRIMDHLSRKLQ*

mRNA from alignment at ScGOVlb_425:1857219..1858112+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12869.t1 ID=Gvermi12869.t1|Name=Gvermi12869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=894bp|location=Sequence derived from alignment at ScGOVlb_425:1857219..1858112+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAAGTCTCCGCCAGCATCACAGATTTCATCACGGAATTCAGAAAT
CCAGGCGCAAAGTAACGTTTTTTCTTCAAATAATCAGAAACAAACTCAGC
ATAAAACTAGTCGTAACCAAGGAGCGCTCGTCGCACGACAAGCTAAGCGA
CAGAAACGATTTCGCTTCACAGACCCGTATGACCTATTTCTTCTGCGCGC
TGTACTAAAGGAAGATGCTCACCTATCAAAATGGGGCGAGCTTGAAGCAA
CGTATAGAAAGGTGCTTGAAGCATTTGCAAAACATATTCCGTCAACCGCG
TTTCTGCATATGAATCGTCCGTCTACAAAAACACTCATTGATCGCGTCAA
TAGGCTAATAAGTATGCGACGAGCTGCAATAAAGAAAAATGTTGCGGTTT
CTGGAACCACAGAAGAATTTGGGGAGAAAGAATCATTGCTGGATGATCTG
ATATTGCAAATAGACGAAAAAGCCGAAACGATAGGGGATACGAAAGAAGA
GCGAAATGAAAACGAACAAAAACTGGTACGCGCGGGAGAGTGTATCAGGC
AGAAAGCTCATAAAAGTGCAAGCAAAACAGATGAGAGTGACAGCCACGAG
AGCCTACAGTCGAAGAAACGTCCGAAGAAGCGTAGAAAGAGATCACCAGT
AGCTGGCTCTGATGATGCATTCAAAACGTTTTTATTCGAGCAAGCAAAAG
AAAAACAACGTTTGGATGCAGAGCGCGTGAAACTTGAGCGTGAACGATTG
GAAATACAGCAAAAAGAATCTTTGCGCCGCTTAGAGCTCGAAGAAAAACG
CTTCGAGCTGGAAAAGCGAGAGCGTATGCAAGCTATGGAAGAACGTAGTA
AGCTTCTTCGCATAATGGACCACTTGAGTCGAAAGTTACAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1857219..1858112+

>Gvermi12869.t1 ID=Gvermi12869.t1|Name=Gvermi12869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=894bp|location=Sequence derived from alignment at ScGOVlb_425:1857219..1858112+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAAGTCTCCGCCAGCATCACAGATTTCATCACGGAATTCAGAAAT
CCAGGCGCAAAGTAACGTTTTTTCTTCAAATAATCAGAAACAAACTCAGC
ATAAAACTAGTCGTAACCAAGGAGCGCTCGTCGCACGACAAGCTAAGCGA
CAGAAACGATTTCGCTTCACAGACCCGTATGACCTATTTCTTCTGCGCGC
TGTACTAAAGGAAGATGCTCACCTATCAAAATGGGGCGAGCTTGAAGCAA
CGTATAGAAAGGTGCTTGAAGCATTTGCAAAACATATTCCGTCAACCGCG
TTTCTGCATATGAATCGTCCGTCTACAAAAACACTCATTGATCGCGTCAA
TAGGCTAATAAGTATGCGACGAGCTGCAATAAAGAAAAATGTTGCGGTTT
CTGGAACCACAGAAGAATTTGGGGAGAAAGAATCATTGCTGGATGATCTG
ATATTGCAAATAGACGAAAAAGCCGAAACGATAGGGGATACGAAAGAAGA
GCGAAATGAAAACGAACAAAAACTGGTACGCGCGGGAGAGTGTATCAGGC
AGAAAGCTCATAAAAGTGCAAGCAAAACAGATGAGAGTGACAGCCACGAG
AGCCTACAGTCGAAGAAACGTCCGAAGAAGCGTAGAAAGAGATCACCAGT
AGCTGGCTCTGATGATGCATTCAAAACGTTTTTATTCGAGCAAGCAAAAG
AAAAACAACGTTTGGATGCAGAGCGCGTGAAACTTGAGCGTGAACGATTG
GAAATACAGCAAAAAGAATCTTTGCGCCGCTTAGAGCTCGAAGAAAAACG
CTTCGAGCTGGAAAAGCGAGAGCGTATGCAAGCTATGGAAGAACGTAGTA
AGCTTCTTCGCATAATGGACCACTTGAGTCGAAAGTTACAGTAA