Gvermi12861.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12861.t1
Unique NameGvermi12861.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1828333..1829049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008246475.1
PFAMsCyclin
Max annot lvl35493|Streptophyta
Evalue1.3e-16
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,37T29@33090|Viridiplantae,3G85D@35493|Streptophyta,4JGJ3@91835|fabids
Descriptioncyclin-P3-1-like
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12861Gvermi12861Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1828333..1829049 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12861.t1.stop1Gvermi12861.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1828333..1828335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12861.t1.CDS1Gvermi12861.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1828333..1829049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12861.t1.exon1Gvermi12861.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1828333..1829049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12861.t1.start1Gvermi12861.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1829047..1829049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12861.t1Gvermi12861.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1828333..1829049 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12861.t1 ID=Gvermi12861.t1|Name=Gvermi12861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=239bp
MALEQVTPEQIMEPPSAAHLLLLRPQFEPPSCSAADNYNSLYIVRALSDV
LERTCQRNATCTLQPNPHIDARTTNIFYSCTVAPFSLSCYVYQLVTRLQL
SRSVYVVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKYLEDECHR
NSTFCTIAGIPSLSELNSMEHEFLRRLQWNCWVSVDTFEEYDSAVFSAHA
SEHVVHAQAAVALESAAFSAARTLSMMTSATPTTLSDV*
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spliced messenger RNA

>Gvermi12861.t1 ID=Gvermi12861.t1|Name=Gvermi12861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=717bp|location=Sequence derived from alignment at ScGOVlb_425:1828333..1829049- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCGAGCAGGTCACGCCCGAGCAGATCATGGAGCCCCCCTCCGC
CGCGCACCTGCTGCTGTTGCGCCCGCAGTTCGAGCCGCCCTCGTGCTCCG
CCGCCGACAACTACAACTCGCTCTACATCGTGCGCGCGCTCTCGGACGTG
CTCGAGCGCACGTGCCAGCGCAACGCCACCTGCACGCTGCAGCCCAACCC
GCACATCGACGCGCGCACCACCAACATATTTTACAGCTGCACCGTCGCCC
CCTTCTCGCTGTCGTGCTATGTGTACCAGCTGGTGACGCGCCTGCAGCTG
AGCCGCAGCGTCTATGTCGTGGCGCTCGTCTTTCTGGACCGCGTGCGACT
CGTGGACCAGCGCCTGTGTCTCATCCACCTCAACGTGCACCGCGTGCTGG
CCACCGCGCTGTGTCTGGCCGACAAGTACCTGGAGGACGAGTGCCACCGC
AACTCCACGTTTTGCACCATAGCCGGAATCCCCTCGCTGTCCGAGCTCAA
CTCCATGGAGCACGAGTTTCTCAGGAGGCTGCAGTGGAACTGCTGGGTCT
CGGTCGACACTTTCGAGGAGTACGATTCCGCCGTGTTCAGCGCCCACGCC
TCCGAGCACGTGGTGCACGCGCAGGCCGCCGTTGCGCTCGAGTCTGCCGC
TTTCAGCGCCGCGCGCACGCTGTCCATGATGACCAGCGCCACGCCAACTA
CCCTCTCTGATGTGTAA
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protein sequence of Gvermi12861.t1

>Gvermi12861.t1 ID=Gvermi12861.t1|Name=Gvermi12861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=239bp
MALEQVTPEQIMEPPSAAHLLLLRPQFEPPSCSAADNYNSLYIVRALSDV
LERTCQRNATCTLQPNPHIDARTTNIFYSCTVAPFSLSCYVYQLVTRLQL
SRSVYVVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKYLEDECHR
NSTFCTIAGIPSLSELNSMEHEFLRRLQWNCWVSVDTFEEYDSAVFSAHA
SEHVVHAQAAVALESAAFSAARTLSMMTSATPTTLSDV*
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mRNA from alignment at ScGOVlb_425:1828333..1829049-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12861.t1 ID=Gvermi12861.t1|Name=Gvermi12861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=717bp|location=Sequence derived from alignment at ScGOVlb_425:1828333..1829049- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCTCGAGCAGGTCACGCCCGAGCAGATCATGGAGCCCCCCTCCGC
CGCGCACCTGCTGCTGTTGCGCCCGCAGTTCGAGCCGCCCTCGTGCTCCG
CCGCCGACAACTACAACTCGCTCTACATCGTGCGCGCGCTCTCGGACGTG
CTCGAGCGCACGTGCCAGCGCAACGCCACCTGCACGCTGCAGCCCAACCC
GCACATCGACGCGCGCACCACCAACATATTTTACAGCTGCACCGTCGCCC
CCTTCTCGCTGTCGTGCTATGTGTACCAGCTGGTGACGCGCCTGCAGCTG
AGCCGCAGCGTCTATGTCGTGGCGCTCGTCTTTCTGGACCGCGTGCGACT
CGTGGACCAGCGCCTGTGTCTCATCCACCTCAACGTGCACCGCGTGCTGG
CCACCGCGCTGTGTCTGGCCGACAAGTACCTGGAGGACGAGTGCCACCGC
AACTCCACGTTTTGCACCATAGCCGGAATCCCCTCGCTGTCCGAGCTCAA
CTCCATGGAGCACGAGTTTCTCAGGAGGCTGCAGTGGAACTGCTGGGTCT
CGGTCGACACTTTCGAGGAGTACGATTCCGCCGTGTTCAGCGCCCACGCC
TCCGAGCACGTGGTGCACGCGCAGGCCGCCGTTGCGCTCGAGTCTGCCGC
TTTCAGCGCCGCGCGCACGCTGTCCATGATGACCAGCGCCACGCCAACTA
CCCTCTCTGATGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1828333..1829049-

>Gvermi12861.t1 ID=Gvermi12861.t1|Name=Gvermi12861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=717bp|location=Sequence derived from alignment at ScGOVlb_425:1828333..1829049- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCTCGAGCAGGTCACGCCCGAGCAGATCATGGAGCCCCCCTCCGC
CGCGCACCTGCTGCTGTTGCGCCCGCAGTTCGAGCCGCCCTCGTGCTCCG
CCGCCGACAACTACAACTCGCTCTACATCGTGCGCGCGCTCTCGGACGTG
CTCGAGCGCACGTGCCAGCGCAACGCCACCTGCACGCTGCAGCCCAACCC
GCACATCGACGCGCGCACCACCAACATATTTTACAGCTGCACCGTCGCCC
CCTTCTCGCTGTCGTGCTATGTGTACCAGCTGGTGACGCGCCTGCAGCTG
AGCCGCAGCGTCTATGTCGTGGCGCTCGTCTTTCTGGACCGCGTGCGACT
CGTGGACCAGCGCCTGTGTCTCATCCACCTCAACGTGCACCGCGTGCTGG
CCACCGCGCTGTGTCTGGCCGACAAGTACCTGGAGGACGAGTGCCACCGC
AACTCCACGTTTTGCACCATAGCCGGAATCCCCTCGCTGTCCGAGCTCAA
CTCCATGGAGCACGAGTTTCTCAGGAGGCTGCAGTGGAACTGCTGGGTCT
CGGTCGACACTTTCGAGGAGTACGATTCCGCCGTGTTCAGCGCCCACGCC
TCCGAGCACGTGGTGCACGCGCAGGCCGCCGTTGCGCTCGAGTCTGCCGC
TTTCAGCGCCGCGCGCACGCTGTCCATGATGACCAGCGCCACGCCAACTA
CCCTCTCTGATGTGTAA
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