Gvermi12812.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12812.t1
Unique NameGvermi12812.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1614535..1615152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706363.1
Max annot lvl2759|Eukaryota
Evalue2.65e-42
EggNOG OGs28IYK@1|root,2QRAA@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12812Gvermi12812Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1614535..1615152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12812.t1.start1Gvermi12812.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1614535..1614537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12812.t1.CDS1Gvermi12812.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1614535..1615152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12812.t1.exon1Gvermi12812.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1614535..1615152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12812.t1.stop1Gvermi12812.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1615150..1615152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12812.t1Gvermi12812.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1614535..1615152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12812.t1 ID=Gvermi12812.t1|Name=Gvermi12812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=206bp
MQLLRVVEAQQLAQPLLLALFCAYLLDMFILQGMVFESIYTTLAPLYAAK
IITHESGHFLSAYLLGFGVQAYALSTRQARQRGLRGQGATLFSNVQLQSE
MSRGQLSVGIIERYAVVLMGGIAAEAIAYGEAEGGDSDVRALLQLLQGLS
PSWQADDVRVLARWAALQATILLRQHQLALRALSGAMREQCSVGTCVQRI
EAAVR*
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spliced messenger RNA

>Gvermi12812.t1 ID=Gvermi12812.t1|Name=Gvermi12812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=618bp|location=Sequence derived from alignment at ScGOVlb_425:1614535..1615152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTGCTTCGTGTGGTTGAGGCGCAGCAACTGGCGCAGCCGTTACT
GTTGGCGCTGTTCTGCGCCTACCTGCTGGACATGTTTATCCTCCAAGGAA
TGGTGTTCGAGAGCATCTACACGACGCTTGCTCCGTTGTACGCCGCCAAA
ATCATCACACACGAGAGCGGCCACTTTCTCAGCGCCTATCTGTTGGGGTT
TGGCGTCCAGGCTTATGCGCTGTCGACACGGCAGGCGCGTCAGAGGGGGC
TGCGCGGACAGGGCGCTACCTTATTTAGCAATGTACAGCTGCAATCAGAG
ATGAGCCGTGGTCAGTTAAGTGTTGGAATAATTGAACGGTATGCCGTTGT
GCTGATGGGCGGCATTGCTGCCGAGGCGATTGCATACGGAGAGGCAGAGG
GCGGTGATTCTGACGTGCGTGCCTTGCTGCAATTGCTGCAGGGCTTGTCT
CCCAGTTGGCAAGCTGATGACGTACGCGTGTTGGCCAGGTGGGCTGCGCT
GCAGGCCACCATTCTGTTGAGACAGCACCAGCTGGCGTTACGCGCGCTCT
CGGGCGCCATGAGGGAGCAGTGCAGTGTGGGAACTTGCGTGCAGCGAATC
GAGGCAGCTGTGCGGTAG
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protein sequence of Gvermi12812.t1

>Gvermi12812.t1 ID=Gvermi12812.t1|Name=Gvermi12812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=206bp
MQLLRVVEAQQLAQPLLLALFCAYLLDMFILQGMVFESIYTTLAPLYAAK
IITHESGHFLSAYLLGFGVQAYALSTRQARQRGLRGQGATLFSNVQLQSE
MSRGQLSVGIIERYAVVLMGGIAAEAIAYGEAEGGDSDVRALLQLLQGLS
PSWQADDVRVLARWAALQATILLRQHQLALRALSGAMREQCSVGTCVQRI
EAAVR*
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mRNA from alignment at ScGOVlb_425:1614535..1615152+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12812.t1 ID=Gvermi12812.t1|Name=Gvermi12812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=618bp|location=Sequence derived from alignment at ScGOVlb_425:1614535..1615152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATTGCTTCGTGTGGTTGAGGCGCAGCAACTGGCGCAGCCGTTACT
GTTGGCGCTGTTCTGCGCCTACCTGCTGGACATGTTTATCCTCCAAGGAA
TGGTGTTCGAGAGCATCTACACGACGCTTGCTCCGTTGTACGCCGCCAAA
ATCATCACACACGAGAGCGGCCACTTTCTCAGCGCCTATCTGTTGGGGTT
TGGCGTCCAGGCTTATGCGCTGTCGACACGGCAGGCGCGTCAGAGGGGGC
TGCGCGGACAGGGCGCTACCTTATTTAGCAATGTACAGCTGCAATCAGAG
ATGAGCCGTGGTCAGTTAAGTGTTGGAATAATTGAACGGTATGCCGTTGT
GCTGATGGGCGGCATTGCTGCCGAGGCGATTGCATACGGAGAGGCAGAGG
GCGGTGATTCTGACGTGCGTGCCTTGCTGCAATTGCTGCAGGGCTTGTCT
CCCAGTTGGCAAGCTGATGACGTACGCGTGTTGGCCAGGTGGGCTGCGCT
GCAGGCCACCATTCTGTTGAGACAGCACCAGCTGGCGTTACGCGCGCTCT
CGGGCGCCATGAGGGAGCAGTGCAGTGTGGGAACTTGCGTGCAGCGAATC
GAGGCAGCTGTGCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1614535..1615152+

>Gvermi12812.t1 ID=Gvermi12812.t1|Name=Gvermi12812.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=618bp|location=Sequence derived from alignment at ScGOVlb_425:1614535..1615152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATTGCTTCGTGTGGTTGAGGCGCAGCAACTGGCGCAGCCGTTACT
GTTGGCGCTGTTCTGCGCCTACCTGCTGGACATGTTTATCCTCCAAGGAA
TGGTGTTCGAGAGCATCTACACGACGCTTGCTCCGTTGTACGCCGCCAAA
ATCATCACACACGAGAGCGGCCACTTTCTCAGCGCCTATCTGTTGGGGTT
TGGCGTCCAGGCTTATGCGCTGTCGACACGGCAGGCGCGTCAGAGGGGGC
TGCGCGGACAGGGCGCTACCTTATTTAGCAATGTACAGCTGCAATCAGAG
ATGAGCCGTGGTCAGTTAAGTGTTGGAATAATTGAACGGTATGCCGTTGT
GCTGATGGGCGGCATTGCTGCCGAGGCGATTGCATACGGAGAGGCAGAGG
GCGGTGATTCTGACGTGCGTGCCTTGCTGCAATTGCTGCAGGGCTTGTCT
CCCAGTTGGCAAGCTGATGACGTACGCGTGTTGGCCAGGTGGGCTGCGCT
GCAGGCCACCATTCTGTTGAGACAGCACCAGCTGGCGTTACGCGCGCTCT
CGGGCGCCATGAGGGAGCAGTGCAGTGTGGGAACTTGCGTGCAGCGAATC
GAGGCAGCTGTGCGGTAG
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