Gvermi3276.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3276.t1
Unique NameGvermi3276.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:889707..890299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_018301m
PFAMsUQ_con
Max annot lvl35493|Streptophyta
KEGG koko:K10573
KEGG Pathwayko04120,map04120
Evalue1.4e-95
EggNOG OGsCOG5078@1|root,KOG0419@2759|Eukaryota,37KTC@33090|Viridiplantae,3G8DM@35493|Streptophyta,4JKG1@91835|fabids
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3276Gvermi3276Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 889707..890299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3276.t1Gvermi3276.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 889707..890299 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3276.t1.stop1Gvermi3276.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 889707..889709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3276.t1.CDS1Gvermi3276.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 889707..890037 -
Gvermi3276.t1.CDS2Gvermi3276.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 890104..890174 -
Gvermi3276.t1.CDS3Gvermi3276.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 890246..890299 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3276.t1.exon1Gvermi3276.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 889707..890037 -
Gvermi3276.t1.exon2Gvermi3276.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 890104..890174 -
Gvermi3276.t1.exon3Gvermi3276.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 890246..890299 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3276.t1.intron1Gvermi3276.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 890038..890103 -
Gvermi3276.t1.intron2Gvermi3276.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 890175..890245 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3276.t1.start1Gvermi3276.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 890297..890299 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3276.t1 ID=Gvermi3276.t1|Name=Gvermi3276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=152bp
MSTPARKRLIRDFKKLQNDPPSGISGAPCDNNIMKWNAVIFGPDDTPWEG
GTFKLTLQFTEEYPNKPPVVKFVSKLFHPNVYNDGGICLDILQSNWSPIY
DISAVLTSIQSLLCDPNPNSPANSEAARLFQENRREYDKRVQQIVEESWT
T*
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spliced messenger RNA

>Gvermi3276.t1 ID=Gvermi3276.t1|Name=Gvermi3276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=456bp|location=Sequence derived from alignment at ScGOVlb_41:889707..890299- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGCCAGCTCGAAAACGTCTCATTCGAGACTTCAAAAAGCTGCA
GAATGACCCTCCATCTGGCATTAGCGGTGCTCCGTGTGACAACAACATCA
TGAAGTGGAATGCTGTGATTTTTGGACCTGATGACACTCCATGGGAAGGA
GGAACGTTTAAGCTAACGTTGCAGTTCACCGAAGAGTACCCGAACAAACC
ACCAGTTGTGAAATTCGTCTCGAAGCTATTTCATCCAAATGTGTACAATG
ATGGAGGGATTTGTCTTGACATTCTGCAGAGCAACTGGAGCCCAATATAC
GATATATCTGCGGTACTCACATCCATACAAAGTCTTTTGTGCGACCCGAA
CCCAAACTCCCCAGCCAACTCAGAAGCTGCAAGACTATTCCAGGAAAACC
GCCGTGAGTACGATAAACGAGTGCAACAAATTGTGGAGGAATCTTGGACG
ACGTAA
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protein sequence of Gvermi3276.t1

>Gvermi3276.t1 ID=Gvermi3276.t1|Name=Gvermi3276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=152bp
MSTPARKRLIRDFKKLQNDPPSGISGAPCDNNIMKWNAVIFGPDDTPWEG
GTFKLTLQFTEEYPNKPPVVKFVSKLFHPNVYNDGGICLDILQSNWSPIY
DISAVLTSIQSLLCDPNPNSPANSEAARLFQENRREYDKRVQQIVEESWT
T*
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mRNA from alignment at ScGOVlb_41:889707..890299-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3276.t1 ID=Gvermi3276.t1|Name=Gvermi3276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=593bp|location=Sequence derived from alignment at ScGOVlb_41:889707..890299- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACGCCAGCTCGAAAACGTCTCATTCGAGACTTCAAAAAGCTGCA
GAATGTAAGTTTGCGCGTAGCAAGCCAGTATATATTGATACGTGCACATC
TTATCACGCTGACATTCACTCATAGGACCCTCCATCTGGCATTAGCGGTG
CTCCGTGTGACAACAACATCATGAAGTGGAATGCTGTGATTTTTGGGTAC
GTGCTTTCCTAATATCTCACGCAGATTGTGAAGCAATACTTGATATACTA
ACATGCAAATAGACCTGATGACACTCCATGGGAAGGAGGAACGTTTAAGC
TAACGTTGCAGTTCACCGAAGAGTACCCGAACAAACCACCAGTTGTGAAA
TTCGTCTCGAAGCTATTTCATCCAAATGTGTACAATGATGGAGGGATTTG
TCTTGACATTCTGCAGAGCAACTGGAGCCCAATATACGATATATCTGCGG
TACTCACATCCATACAAAGTCTTTTGTGCGACCCGAACCCAAACTCCCCA
GCCAACTCAGAAGCTGCAAGACTATTCCAGGAAAACCGCCGTGAGTACGA
TAAACGAGTGCAACAAATTGTGGAGGAATCTTGGACGACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:889707..890299-

>Gvermi3276.t1 ID=Gvermi3276.t1|Name=Gvermi3276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=456bp|location=Sequence derived from alignment at ScGOVlb_41:889707..890299- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACGCCAGCTCGAAAACGTCTCATTCGAGACTTCAAAAAGCTGCA
GAATGACCCTCCATCTGGCATTAGCGGTGCTCCGTGTGACAACAACATCA
TGAAGTGGAATGCTGTGATTTTTGGACCTGATGACACTCCATGGGAAGGA
GGAACGTTTAAGCTAACGTTGCAGTTCACCGAAGAGTACCCGAACAAACC
ACCAGTTGTGAAATTCGTCTCGAAGCTATTTCATCCAAATGTGTACAATG
ATGGAGGGATTTGTCTTGACATTCTGCAGAGCAACTGGAGCCCAATATAC
GATATATCTGCGGTACTCACATCCATACAAAGTCTTTTGTGCGACCCGAA
CCCAAACTCCCCAGCCAACTCAGAAGCTGCAAGACTATTCCAGGAAAACC
GCCGTGAGTACGATAAACGAGTGCAACAAATTGTGGAGGAATCTTGGACG
ACGTAA
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