Gvermi3287.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3287.t1
Unique NameGvermi3287.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:930299..931384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc06g082510.2.1
PFAMsDAO,Myb_DNA-binding
Max annot lvl35493|Streptophyta
KEGG koko:K11111
KEGG ModuleM00424
Evalue6.14e-09
EggNOG OGs2CMZ8@1|root,2QSW7@2759|Eukaryota,37R4K@33090|Viridiplantae,3GFJJ@35493|Streptophyta,44NE4@71274|asterids
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3287Gvermi3287Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 930299..931384 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3287.t1.start1Gvermi3287.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 930299..930301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3287.t1.CDS1Gvermi3287.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 930299..931384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3287.t1.exon1Gvermi3287.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 930299..931384 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3287.t1.stop1Gvermi3287.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 931382..931384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3287.t1Gvermi3287.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 930299..931384 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3287.t1 ID=Gvermi3287.t1|Name=Gvermi3287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp
MHAKPARTRRRARVSTRRKTVRWSTREVDALLAGVRAHGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAALAGETLPIPDPPATPPAQHSPQP
DSSSPVSALHTIAEPTIEQQPAEHPVSTSPSTDSPPSTVPLSDFPPVTPE
LLTTPAFTAPSMNPITPYTISQSFYHSAATIAADYWRRVARDTVYGIGPH
PPMFPYVKQDHLMHSDEYDDDDDDDDDDEAVQQPLYNPYVVAVAQMYGRL
EPASFGCALFPISADQYTAETETRDKDECIAREADCPSEPPNMDSNVSSS
ATGMNIASDADQPKAPVEDADDTTVEAALFDVEERKTSTSGDSDQSLLHD
EPLYDPLTTLG*
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spliced messenger RNA

>Gvermi3287.t1 ID=Gvermi3287.t1|Name=Gvermi3287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_41:930299..931384+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCCAAGCCCGCGCGCACGCGCAGGAGGGCGCGCGTCTCCACGCG
TCGAAAGACAGTGAGATGGTCTACGCGCGAGGTCGACGCGCTTCTTGCCG
GCGTTCGCGCCCACGGCGTGGGCAAGTGGGCGCGTATTCTTCGCCACTCT
CCTGTTTTCAATGGTGTCAGAACCTCTGTCGATCTTAAGGACAAGTGGCG
CAACCTTACCTCCCCCGTGCGTGCTGCAGCGCTCGCCGGCGAGACGCTCC
CTATTCCCGACCCCCCTGCCACACCGCCGGCTCAGCACTCCCCCCAACCA
GACAGCTCCAGTCCTGTTTCTGCACTCCACACCATCGCCGAACCTACGAT
CGAGCAACAGCCGGCGGAGCACCCCGTCTCGACCTCGCCTTCCACCGATT
CCCCGCCTTCCACCGTTCCGCTGTCCGATTTCCCTCCCGTCACTCCGGAA
CTTCTGACCACCCCGGCTTTCACCGCCCCTTCCATGAACCCGATCACCCC
ATACACAATTTCCCAGAGCTTCTATCACTCTGCGGCTACCATCGCCGCAG
ATTACTGGCGGCGAGTTGCTCGTGATACAGTGTACGGAATTGGTCCGCAC
CCACCTATGTTTCCGTACGTCAAGCAAGATCATCTcatgcatagtgatga
atacgatgatgacgatgacgacgacgatgacgacgaagccgTGCAGCAAC
CACTTTACAACCCCTATGTTGTTGCCGTCGCACAGATGTACGGGAGACTG
GAACCTGCATCTTTTGGGTGCGCCCTCTTCCCGATATCTGCTGACCAATA
TACTGCTGAAACTGAAACTCGCGATAAGGACGAGTGCATTGCTCGAGAGG
CAGATTGTCCCAGTGAACCTCCAAACATGGACTCCAATGTTTCGTCCTCA
GCCACTGGAATGAATATTGCCAGCGATGCTGACCAACCCAAGGCTCCCGT
TGAGGACGCTGATGACACCACAGTTGAAGCAGCGCTGTTCGACGTGGAAG
AGAGGAAGACCTCTACTTCTGGCGATTCTGATCAGTCTTTACTACATGAC
GAGCCACTGTATGATCCATTGACCACTTTGGGATGA
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protein sequence of Gvermi3287.t1

>Gvermi3287.t1 ID=Gvermi3287.t1|Name=Gvermi3287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=362bp
MHAKPARTRRRARVSTRRKTVRWSTREVDALLAGVRAHGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAALAGETLPIPDPPATPPAQHSPQP
DSSSPVSALHTIAEPTIEQQPAEHPVSTSPSTDSPPSTVPLSDFPPVTPE
LLTTPAFTAPSMNPITPYTISQSFYHSAATIAADYWRRVARDTVYGIGPH
PPMFPYVKQDHLMHSDEYDDDDDDDDDDEAVQQPLYNPYVVAVAQMYGRL
EPASFGCALFPISADQYTAETETRDKDECIAREADCPSEPPNMDSNVSSS
ATGMNIASDADQPKAPVEDADDTTVEAALFDVEERKTSTSGDSDQSLLHD
EPLYDPLTTLG*
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mRNA from alignment at ScGOVlb_41:930299..931384+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3287.t1 ID=Gvermi3287.t1|Name=Gvermi3287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_41:930299..931384+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGCCAAGCCCGCGCGCACGCGCAGGAGGGCGCGCGTCTCCACGCG
TCGAAAGACAGTGAGATGGTCTACGCGCGAGGTCGACGCGCTTCTTGCCG
GCGTTCGCGCCCACGGCGTGGGCAAGTGGGCGCGTATTCTTCGCCACTCT
CCTGTTTTCAATGGTGTCAGAACCTCTGTCGATCTTAAGGACAAGTGGCG
CAACCTTACCTCCCCCGTGCGTGCTGCAGCGCTCGCCGGCGAGACGCTCC
CTATTCCCGACCCCCCTGCCACACCGCCGGCTCAGCACTCCCCCCAACCA
GACAGCTCCAGTCCTGTTTCTGCACTCCACACCATCGCCGAACCTACGAT
CGAGCAACAGCCGGCGGAGCACCCCGTCTCGACCTCGCCTTCCACCGATT
CCCCGCCTTCCACCGTTCCGCTGTCCGATTTCCCTCCCGTCACTCCGGAA
CTTCTGACCACCCCGGCTTTCACCGCCCCTTCCATGAACCCGATCACCCC
ATACACAATTTCCCAGAGCTTCTATCACTCTGCGGCTACCATCGCCGCAG
ATTACTGGCGGCGAGTTGCTCGTGATACAGTGTACGGAATTGGTCCGCAC
CCACCTATGTTTCCGTACGTCAAGCAAGATCATCTcatgcatagtgatga
atacgatgatgacgatgacgacgacgatgacgacgaagccgTGCAGCAAC
CACTTTACAACCCCTATGTTGTTGCCGTCGCACAGATGTACGGGAGACTG
GAACCTGCATCTTTTGGGTGCGCCCTCTTCCCGATATCTGCTGACCAATA
TACTGCTGAAACTGAAACTCGCGATAAGGACGAGTGCATTGCTCGAGAGG
CAGATTGTCCCAGTGAACCTCCAAACATGGACTCCAATGTTTCGTCCTCA
GCCACTGGAATGAATATTGCCAGCGATGCTGACCAACCCAAGGCTCCCGT
TGAGGACGCTGATGACACCACAGTTGAAGCAGCGCTGTTCGACGTGGAAG
AGAGGAAGACCTCTACTTCTGGCGATTCTGATCAGTCTTTACTACATGAC
GAGCCACTGTATGATCCATTGACCACTTTGGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:930299..931384+

>Gvermi3287.t1 ID=Gvermi3287.t1|Name=Gvermi3287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1086bp|location=Sequence derived from alignment at ScGOVlb_41:930299..931384+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGCCAAGCCCGCGCGCACGCGCAGGAGGGCGCGCGTCTCCACGCG
TCGAAAGACAGTGAGATGGTCTACGCGCGAGGTCGACGCGCTTCTTGCCG
GCGTTCGCGCCCACGGCGTGGGCAAGTGGGCGCGTATTCTTCGCCACTCT
CCTGTTTTCAATGGTGTCAGAACCTCTGTCGATCTTAAGGACAAGTGGCG
CAACCTTACCTCCCCCGTGCGTGCTGCAGCGCTCGCCGGCGAGACGCTCC
CTATTCCCGACCCCCCTGCCACACCGCCGGCTCAGCACTCCCCCCAACCA
GACAGCTCCAGTCCTGTTTCTGCACTCCACACCATCGCCGAACCTACGAT
CGAGCAACAGCCGGCGGAGCACCCCGTCTCGACCTCGCCTTCCACCGATT
CCCCGCCTTCCACCGTTCCGCTGTCCGATTTCCCTCCCGTCACTCCGGAA
CTTCTGACCACCCCGGCTTTCACCGCCCCTTCCATGAACCCGATCACCCC
ATACACAATTTCCCAGAGCTTCTATCACTCTGCGGCTACCATCGCCGCAG
ATTACTGGCGGCGAGTTGCTCGTGATACAGTGTACGGAATTGGTCCGCAC
CCACCTATGTTTCCGTACGTCAAGCAAGATCATCTcatgcatagtgatga
atacgatgatgacgatgacgacgacgatgacgacgaagccgTGCAGCAAC
CACTTTACAACCCCTATGTTGTTGCCGTCGCACAGATGTACGGGAGACTG
GAACCTGCATCTTTTGGGTGCGCCCTCTTCCCGATATCTGCTGACCAATA
TACTGCTGAAACTGAAACTCGCGATAAGGACGAGTGCATTGCTCGAGAGG
CAGATTGTCCCAGTGAACCTCCAAACATGGACTCCAATGTTTCGTCCTCA
GCCACTGGAATGAATATTGCCAGCGATGCTGACCAACCCAAGGCTCCCGT
TGAGGACGCTGATGACACCACAGTTGAAGCAGCGCTGTTCGACGTGGAAG
AGAGGAAGACCTCTACTTCTGGCGATTCTGATCAGTCTTTACTACATGAC
GAGCCACTGTATGATCCATTGACCACTTTGGGATGA
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