Gvermi3681.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3681.t1
Unique NameGvermi3681.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3996018..3997001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog74547.PMT_0643
PFAMsEamA
Max annot lvl1117|Cyanobacteria
Evalue8.95e-11
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1G4FV@1117|Cyanobacteria,1MKME@1212|Prochloraceae
DescriptionIntegral membrane protein
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3681Gvermi3681Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3996018..3997001 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3681.t1.stop1Gvermi3681.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3996018..3996020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3681.t1.CDS1Gvermi3681.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3996018..3997001 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3681.t1.exon1Gvermi3681.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3996018..3997001 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3681.t1.start1Gvermi3681.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3996999..3997001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3681.t1Gvermi3681.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3996018..3997001 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3681.t1 ID=Gvermi3681.t1|Name=Gvermi3681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MNTDSRTPSPHDKAKIVNISDSEAPLIPPSALIVLSSVCFTLMNTISRNV
THNHNVSSSVVTISRGTVQLVLSTLLALQLSRPDTSGFQKLLLLLRAFLG
GAASYCRFICLAKMKVALASALFTTTPVFAVILGFIFLHRSFVKRDVLAI
ALCSSGATLIAYDSLLGQSGGRVSPTAVITGLGSAALTASTYVVVRFMGT
KVHFIMNVFVTSIANILLPITTVAVRERQAFLVLDFFREEIKRIDDWRIY
GRLGLLGILGFCGASCLNRALQSTSPSQAATIRTLDIPFSALQGYILLAE
LPTSSFQSVGCLLVMLGAYASAVNKAT*
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spliced messenger RNA

>Gvermi3681.t1 ID=Gvermi3681.t1|Name=Gvermi3681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_41:3996018..3997001- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACAGACTCACGCACGCCGTCCCCACACGACAAGGCAAAAATAGT
GAACATTTCTGACTCTGAAGCGCCGCTCATACCCCCGTCCGCGCTTATTG
TTCTTTCAAGTGTGTGCTTCACGTTAATGAACACCATCAGTCGAAACGTC
ACACACAACCATAATGTGTCGTCGTCTGTTGTGACAATATCGCGCGGTAC
TGTACAGCTCGTGCTTTCTACACTTCTCGCATTGCAACTTTCCCGGCCGG
ATACCTCCGGATTCCAAAAGTTGCTTCTCCTGTTGCGAGCTTTTTTGGGC
GGTGCAGCTTCCTATTGCCGTTTCATTTGTCTCGCCAAAATGAAGGTCGC
GCTGGCAAGTGCCCTTTTCACGACCACACCGGTTTTCGCTGTAATATTAG
GTTTCATATTCCTGCATCGCTCCTTCGTTAAACGCGACGTACTTGCCATC
GCTCTATGTTCCTCAGGAGCTACTCTTATCGCGTATGATTCATTGCTAGG
CCAATCTGGAGGCCGAGTGTCTCCAACGGCCGTTATCACCGGTCTCGGAT
CAGCCGCTTTGACGGCGTCAACATACGTAGTAGTTCGCTTTATGGGCACA
AAGGTGCACTTCATCATGAATGTTTTCGTCACAAGCATCGCAAATATTCT
GCTCCCTATTACAACAGTGGCAGTGCGCGAACGTCAGGCGTTTTTAGTTT
TAGATTTCTTCAGAGAGGAAATTAAGCGGATTGACGATTGGCGCATATAC
GGTCGTCTCGGTCTGCTTGGAATCCTGGGCTTCTGTGGTGCCTCTTGCCT
CAACCGCGCGTTGCAGTCCACATCCCCGTCCCAGGCAGCCACAATTCGGA
CCTTGGATATTCCTTTCAGTGCCCTTCAGGGTTACATACTGCTCGCGGAG
CTGCCCACGTCGTCATTCCAGTCAGTCGGCTGTCTGCTGGTCATGCTTGG
AGCGTACGCTAGCGCCGTAAACAAAGCAACGTAA
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protein sequence of Gvermi3681.t1

>Gvermi3681.t1 ID=Gvermi3681.t1|Name=Gvermi3681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MNTDSRTPSPHDKAKIVNISDSEAPLIPPSALIVLSSVCFTLMNTISRNV
THNHNVSSSVVTISRGTVQLVLSTLLALQLSRPDTSGFQKLLLLLRAFLG
GAASYCRFICLAKMKVALASALFTTTPVFAVILGFIFLHRSFVKRDVLAI
ALCSSGATLIAYDSLLGQSGGRVSPTAVITGLGSAALTASTYVVVRFMGT
KVHFIMNVFVTSIANILLPITTVAVRERQAFLVLDFFREEIKRIDDWRIY
GRLGLLGILGFCGASCLNRALQSTSPSQAATIRTLDIPFSALQGYILLAE
LPTSSFQSVGCLLVMLGAYASAVNKAT*
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mRNA from alignment at ScGOVlb_41:3996018..3997001-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3681.t1 ID=Gvermi3681.t1|Name=Gvermi3681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_41:3996018..3997001- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACAGACTCACGCACGCCGTCCCCACACGACAAGGCAAAAATAGT
GAACATTTCTGACTCTGAAGCGCCGCTCATACCCCCGTCCGCGCTTATTG
TTCTTTCAAGTGTGTGCTTCACGTTAATGAACACCATCAGTCGAAACGTC
ACACACAACCATAATGTGTCGTCGTCTGTTGTGACAATATCGCGCGGTAC
TGTACAGCTCGTGCTTTCTACACTTCTCGCATTGCAACTTTCCCGGCCGG
ATACCTCCGGATTCCAAAAGTTGCTTCTCCTGTTGCGAGCTTTTTTGGGC
GGTGCAGCTTCCTATTGCCGTTTCATTTGTCTCGCCAAAATGAAGGTCGC
GCTGGCAAGTGCCCTTTTCACGACCACACCGGTTTTCGCTGTAATATTAG
GTTTCATATTCCTGCATCGCTCCTTCGTTAAACGCGACGTACTTGCCATC
GCTCTATGTTCCTCAGGAGCTACTCTTATCGCGTATGATTCATTGCTAGG
CCAATCTGGAGGCCGAGTGTCTCCAACGGCCGTTATCACCGGTCTCGGAT
CAGCCGCTTTGACGGCGTCAACATACGTAGTAGTTCGCTTTATGGGCACA
AAGGTGCACTTCATCATGAATGTTTTCGTCACAAGCATCGCAAATATTCT
GCTCCCTATTACAACAGTGGCAGTGCGCGAACGTCAGGCGTTTTTAGTTT
TAGATTTCTTCAGAGAGGAAATTAAGCGGATTGACGATTGGCGCATATAC
GGTCGTCTCGGTCTGCTTGGAATCCTGGGCTTCTGTGGTGCCTCTTGCCT
CAACCGCGCGTTGCAGTCCACATCCCCGTCCCAGGCAGCCACAATTCGGA
CCTTGGATATTCCTTTCAGTGCCCTTCAGGGTTACATACTGCTCGCGGAG
CTGCCCACGTCGTCATTCCAGTCAGTCGGCTGTCTGCTGGTCATGCTTGG
AGCGTACGCTAGCGCCGTAAACAAAGCAACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3996018..3997001-

>Gvermi3681.t1 ID=Gvermi3681.t1|Name=Gvermi3681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_41:3996018..3997001- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACAGACTCACGCACGCCGTCCCCACACGACAAGGCAAAAATAGT
GAACATTTCTGACTCTGAAGCGCCGCTCATACCCCCGTCCGCGCTTATTG
TTCTTTCAAGTGTGTGCTTCACGTTAATGAACACCATCAGTCGAAACGTC
ACACACAACCATAATGTGTCGTCGTCTGTTGTGACAATATCGCGCGGTAC
TGTACAGCTCGTGCTTTCTACACTTCTCGCATTGCAACTTTCCCGGCCGG
ATACCTCCGGATTCCAAAAGTTGCTTCTCCTGTTGCGAGCTTTTTTGGGC
GGTGCAGCTTCCTATTGCCGTTTCATTTGTCTCGCCAAAATGAAGGTCGC
GCTGGCAAGTGCCCTTTTCACGACCACACCGGTTTTCGCTGTAATATTAG
GTTTCATATTCCTGCATCGCTCCTTCGTTAAACGCGACGTACTTGCCATC
GCTCTATGTTCCTCAGGAGCTACTCTTATCGCGTATGATTCATTGCTAGG
CCAATCTGGAGGCCGAGTGTCTCCAACGGCCGTTATCACCGGTCTCGGAT
CAGCCGCTTTGACGGCGTCAACATACGTAGTAGTTCGCTTTATGGGCACA
AAGGTGCACTTCATCATGAATGTTTTCGTCACAAGCATCGCAAATATTCT
GCTCCCTATTACAACAGTGGCAGTGCGCGAACGTCAGGCGTTTTTAGTTT
TAGATTTCTTCAGAGAGGAAATTAAGCGGATTGACGATTGGCGCATATAC
GGTCGTCTCGGTCTGCTTGGAATCCTGGGCTTCTGTGGTGCCTCTTGCCT
CAACCGCGCGTTGCAGTCCACATCCCCGTCCCAGGCAGCCACAATTCGGA
CCTTGGATATTCCTTTCAGTGCCCTTCAGGGTTACATACTGCTCGCGGAG
CTGCCCACGTCGTCATTCCAGTCAGTCGGCTGTCTGCTGGTCATGCTTGG
AGCGTACGCTAGCGCCGTAAACAAAGCAACGTAA
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