Gvermi9650.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi9650.t1
Unique NameGvermi9650.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length314
Homology
BLAST of Gvermi9650.t1 vs. uniprot
Match: A0A2V3IRQ4_9FLOR (DNA repair protein XRCC2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ4_9FLOR)

HSP 1 Score: 308 bits (789), Expect = 3.680e-101
Identity = 156/317 (49.21%), Postives = 223/317 (70.35%), Query Frame = 0
Query:    1 MTDDTILNAISKRLGTYP----STTPDQSLGPIISTGIGILDDVKQHPVRLGSLVDISGVSMSGKTQVLHAITAHVLLKHFGGRGPFVCWFDLNRGLCPNRLRGLM-RKMRDESFDVNCDVNCEDQIDAMTGLRVYYPSSTISMCSSLHALLEYIFTEEGNEVCTVVIDSLGSFHYVDKHSFERADLDTSVRKQSHELILCKVLEQLLLTRKVTVFVSKSCLFGETKLDVPWPFPKAGVPMIPKEFMPDLWKSISSHILLTYHLQTLENGESNG-QRGIIALKYIEPVRSPGRRALVSAAAVVIIDNEGITMDTLHV 311
            M+ D +  AI+ RLGT+       T D+    ++ TG+ +LD+ +  PVRLGSL+D++GVS+SGKTQVLH I A+ LL    G GP VCW+DLNRGL PNRLR ++  K R    +V      E  I  + GL VY PSST+S+C+S+H L  ++ + EG  V TV+IDSLGSFHY+DK+ F+    D+S  KQS EL+L +VLE +L  RKV V+VSKSCLF E KLD+PWPFP+AGVP +PK+FMPDLWK+++SHI+L YH+++  +  +NG +RG++A+ Y +P ++  R+ +V +A++  I+N+G+  ++LHV
Sbjct:    1 MSPDPVSRAIAARLGTFAIPRNRLTVDRGAA-VVRTGLAVLDETRDMPVRLGSLIDVTGVSLSGKTQVLHFIAAYALLNRTCGNGPVVCWYDLNRGLDPNRLRQMIISKQRQGGSNVT-----ERDISDLDGLLVYRPSSTLSLCASIHDLKRFL-SAEGAGVQTVIIDSLGSFHYMDKYEFDSGLRDSSTMKQSIELVLARVLEPILSLRKVVVYVSKSCLFDEVKLDIPWPFPRAGVPSMPKDFMPDLWKNLTSHIILMYHIESTSSDYNNGARRGVVAMYYKDPQKNLIRKPVVGSASLATINNDGLFFESLHV 310          
BLAST of Gvermi9650.t1 vs. uniprot
Match: R7Q2X9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2X9_CHOCR)

HSP 1 Score: 110 bits (275), Expect = 1.290e-25
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 0
Query:  158 VCTVVIDSLGSFHYVDKHSFERADL-DTSVRKQSHELILCKVLEQLLLTRKVTVFVSKSCLFGETKLDVPWPFPKAGVPMIPKEFMPDLWKSISSHILLTYHLQTLENGESNGQ----RGIIALKYIEPVRSPGRRALVSAAAVVIIDNEGI--TMDTLHVV 312
            V  V+ID+LG+FHY+DK     +D+ + +    ++E +L  VL +LL ++KV VF SKS LF E  L V WPF +AG+P IP+EFMP  W+SIS H +L Y      + E++ +    RGI++L   E   S  R   V+AA+ + ID++GI    + +HVV
Sbjct:   35 VRNVIIDALGTFHYLDKFQISTSDVREKAPGSGTNEFVLVNVLRELLKSQKVIVFASKSALFEEEALGVKWPFSQAGIPSIPREFMPSSWRSISLHTVLLYFTADGRSAEAHERIDQRRGIVSLLRNED-NSFIREMTVTAASTIRIDSDGILENENDIHVV 195          
BLAST of Gvermi9650.t1 vs. uniprot
Match: UPI000B8CC4E5 (DNA repair protein XRCC2 homolog isoform X1 n=4 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CC4E5)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-8
Identity = 65/265 (24.53%), Postives = 112/265 (42.26%), Query Frame = 0
Query:   37 LDDVKQHPVRLGSLVDISGVSMSGKTQVLHAITAHVLLK------HFGGRGPFV------CWFDLNR-------------GLCPNRLRGLMRKMRDESFDVNCDVNCEDQIDAMTG-------LRVYYPSSTISMCSSLHALLEYIFTEEGNEVCTVVIDSLGSFHYVDKHSFERADLDTSVRKQSHELILCKVLEQ---LLLTRKVTVFVSKSCLFGE--TKLDVPWPFPKAGV------------PMIPKEFMPDLWKSISSH 252
            L  + + P+R G+++++ G S S KTQ+L+ +  + +L       H+GG G  V      C FD+ R             G      +G     +  SF+V    N     +           +R Y     +S   +LH LL+       +EVC ++IDS+GSFH++D+ S        + R  S + +   V+ +   LL    + V  +K+ + G+  +  DV   F    V            P   +E+MP +W+S+ +H
Sbjct:   36 LPPLHRVPLRTGNVIELVGPSPSAKTQILYQVAINGILPKQWNGIHYGGLGQLVFFLDLDCRFDILRFSHMLKHRIMEANGSSNRASQGNREVDKWSSFEVQKKPNIAYDKELFAFCLRRFLYVRCYDTHEFLSSFKTLHCLLQKERNTHDSEVCLLMIDSIGSFHWMDRASSSLPLGANNRRNLSLQNVFESVVHEIRKLLQLHPLLVITTKATILGDRHSMHDVKLKFASLNVANSRNATNNSQQPWF-REYMPFVWQSLVTH 299          
BLAST of Gvermi9650.t1 vs. uniprot
Match: UPI000511508D (DNA repair protein XRCC2 homolog n=2 Tax=Maleae TaxID=721813 RepID=UPI000511508D)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-6
Identity = 55/247 (22.27%), Postives = 111/247 (44.94%), Query Frame = 0
Query:   36 ILDDVKQHPVRLGSLVDISGVSMSGKTQVLHAITAHVLLK------HFGGRGPFVCWFDLNRGLCPNRLRGLMRKMRDESFDVNCDVNCEDQIDAMTG-----LRVYYPSSTISMCSSLHALLEYIFTEEGNEVCTVVIDSLGSFHYVDKHSFERADLDTSVRKQSHELILCKVLEQ---LLLTRKVTVFVSKSCLFG------ETKLDVPWPFPK------AGVPMIP-KEFMPDLWKSISSHILL 255
            ++  + + P+R+G++V++ G S S KT +L     + +L       H+GG    V + DL+   C   +  L   ++    + N  +N ++ +  +       +R Y     ++   ++H  L     E    +  ++IDS+GSFH++D+ S      D   ++ S + +   V+++   L L   + V  +K  + G      E K +  +P         +    +P +E+MP +W+S  +H LL
Sbjct:   28 LIPPLHRVPLRVGNVVELVGPSSSAKTLILIQAAVNCILPKEWNGVHYGGLERLVMFLDLD---CRFDILRLSEVLKLRIMEPNGSMNYDEGLFNLCMRRFLYVRCYDSRQFLATLKTMHYRLRKEKEEHHVSIYLLMIDSIGSFHWIDRGSTFFPLGDEKRKRLSLQSVSDAVVQEIRKLQLVHPMLVIATKEIILGNAYGAYEAKQNTSFPEVSDLRNSTSNTQQLPYREYMPSVWQSFVTHKLL 271          
BLAST of Gvermi9650.t1 vs. uniprot
Match: A0A5N5HES0_9ROSA (DNA repair protein XRCC2-like protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HES0_9ROSA)

HSP 1 Score: 59.3 bits (142), Expect = 3.700e-6
Identity = 67/296 (22.64%), Postives = 130/296 (43.92%), Query Frame = 0
Query:   36 ILDDVKQHPVRLGSLVDISGVSMSGKTQVLHAITAHVLLK------HFGGRGPFVCWFDLNRGLCPNRLRGLMRKMRDESFDVNCDVNCEDQIDAMTG-----LRVYYPSSTISMCSSLHALLEYIFTEEGNEVCTVVIDSLGSFHYVDKHSFERADLDTSVRK----QSHELILCKVLEQLLLTRKVTVFVSKSCLFG------ETKLDVPWPFPK------AGVPMIP-KEFMPDLWKSISSHILLTY----HLQTLENGESNGQRGIIALKYIEPVRSPGRRALVSAAAVVII 299
            ++  + + P+R+G++V++ G S S KT +L     + +L       H+GG    V + DL+   C   +  L   ++    + N  +N ++ +  +       +R Y     ++   ++H  L     E    +  ++IDS+GSFH++D+ S     L    RK    QS    + + + +L L   + V  +K  + G      E K +  +P         +    +P +E+MP +W+S  +H LL      HL    + ES+    +   +++ P  S   + +V  A +VI+
Sbjct:  311 LIPPLHRVPLRVGNVVELVGPSSSAKTLILIQAAVNCILPKEWNGVHYGGLERLVMFLDLD---CRFDVLRLSEMLKLRIMEPNGSMNYDEGLFNLCMRRFLYVRCYDSLQFLATLKTMHYRLRKEKEEHHVSIYLLMIDSIGSFHWIDRGS-TFFPLGGEKRKRLSLQSVSDAVVQEIRKLQLVHPMLVITTKEIILGNAYGAYEAKQNTSFPEVSDLRNSTSNTQQLPYREYMPSVWQSFVTHKLLVRASDDHLPIRHHEESS----LYLSEWLLPSLSFRDKFIVKDAGIVIV 598          
The following BLAST results are available for this feature:
BLAST of Gvermi9650.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IRQ4_9FLOR3.680e-10149.21DNA repair protein XRCC2-like n=1 Tax=Gracilariops... [more]
R7Q2X9_CHOCR1.290e-2541.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI000B8CC4E52.260e-824.53DNA repair protein XRCC2 homolog isoform X1 n=4 Ta... [more]
UPI000511508D1.200e-622.27DNA repair protein XRCC2 homolog n=2 Tax=Maleae Ta... [more]
A0A5N5HES0_9ROSA3.700e-622.64DNA repair protein XRCC2-like protein n=1 Tax=Pyru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 30..212
e-value: 1.5E-7
score: 31.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 21..305
e-value: 5.3E-19
score: 70.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 29..213
IPR030547DNA repair protein XRCC2PANTHERPTHR46644DNA REPAIR PROTEIN XRCC2coord: 33..293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24230contigScGOVlb_24230:1572835..1573843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9650.t1Gvermi9650.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24230 1572835..1573843 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi9650.t1 ID=Gvermi9650.t1|Name=Gvermi9650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=314bp
MTDDTILNAISKRLGTYPSTTPDQSLGPIISTGIGILDDVKQHPVRLGSL
VDISGVSMSGKTQVLHAITAHVLLKHFGGRGPFVCWFDLNRGLCPNRLRG
LMRKMRDESFDVNCDVNCEDQIDAMTGLRVYYPSSTISMCSSLHALLEYI
FTEEGNEVCTVVIDSLGSFHYVDKHSFERADLDTSVRKQSHELILCKVLE
QLLLTRKVTVFVSKSCLFGETKLDVPWPFPKAGVPMIPKEFMPDLWKSIS
SHILLTYHLQTLENGESNGQRGIIALKYIEPVRSPGRRALVSAAAVVIID
NEGITMDTLHVVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR027417P-loop_NTPase
IPR030547XRCC2