Gvermi9543.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi9543.t1
Unique NameGvermi9543.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length104
Homology
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BLAST of Gvermi9543.t1 vs. uniprot
Match: A0A2V3IM76_9FLOR (Nucleoid-associated protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM76_9FLOR)

HSP 1 Score: 170 bits (430), Expect = 5.170e-53
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 0 
Query:    4 SVSRNVFKKALSTAGRTLSSTRVEAEAGQGLVRATLAGDGRVVKLHISPAIGKEGPRAIEELVCTAVNRAHDRLREETRKHVVQSLPPNVDAAMVLRALP 103
            S+SRNVFKKALSTAGR LSSTRVEAEAGQGLVRATLAGDGR+VKLH+  AIGKEGP+AIEELV  AVNRAHDRLREETRK V+QSLPPNVD AMVLRALP
Sbjct:    8 SMSRNVFKKALSTAGRALSSTRVEAEAGQGLVRATLAGDGRIVKLHVDSAIGKEGPKAIEELVAAAVNRAHDRLREETRKQVLQSLPPNVDPAMVLRALP 107
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BLAST of Gvermi9543.t1 vs. uniprot
Match: A0A7C5DNS8_9BACT (Nucleoid-associated protein ENL11_00360 n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C5DNS8_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.290e-10
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:   19 RTLSSTRVEAEAGQGLVRATLAGDGRVVKLHISPAIGKEGP-RAIEELVCTAVNRAHDRLREETRKHVVQ---SLPPNV 93
            R L+  RVEA+AG G+V+A ++G+G +V+LHISP +  EG    +E+LV  AV  A  R RE  RK +      LPP +
Sbjct:    8 RRLACARVEADAGGGIVKAVVSGEGELVELHISPEVVAEGDAEMLEDLVLAAVKEAQARARELARKEMSDLAGGLPPGM 86
The following BLAST results are available for this feature:
BLAST of Gvermi9543.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IM76_9FLOR5.170e-5388.00Nucleoid-associated protein n=1 Tax=Gracilariopsis... [more]
A0A7C5DNS8_9BACT2.290e-1044.30Nucleoid-associated protein ENL11_00360 n=1 Tax=Ca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004401Nucleoid-associated protein YbaB/EbfC familyPFAMPF02575YbaB_DNA_bdcoord: 11..85
e-value: 2.0E-14
score: 53.6
IPR036894Nucleoid-associated protein YbaB-like domain superfamilyGENE3D3.30.1310.10coord: 6..95
e-value: 1.5E-15
score: 59.1
IPR036894Nucleoid-associated protein YbaB-like domain superfamilySUPERFAMILY82607YbaB-likecoord: 11..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24230contigScGOVlb_24230:1223188..1223499 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9543.t1Gvermi9543.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24230 1223188..1223499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi9543.t1 ID=Gvermi9543.t1|Name=Gvermi9543.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=104bp
MSASVSRNVFKKALSTAGRTLSSTRVEAEAGQGLVRATLAGDGRVVKLHI
SPAIGKEGPRAIEELVCTAVNRAHDRLREETRKHVVQSLPPNVDAAMVLR
ALP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004401YbaB/EbfC
IPR036894YbaB-like_sf