Gvermi951.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi951.t1
Unique NameGvermi951.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length781
Homology
BLAST of Gvermi951.t1 vs. uniprot
Match: A0A2V3IYU1_9FLOR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYU1_9FLOR)

HSP 1 Score: 983 bits (2541), Expect = 0.000e+0
Identity = 562/781 (71.96%), Postives = 632/781 (80.92%), Query Frame = 0
Query:    1 MRGPTASMPSEETLREMMRAAXXXXXXXXXXXXXXXXXXTTSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVEGGVRWKKIQAVAREIAAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAVFVEKFAEGHLDKFLEEARSGTRPIGRPAFYDSLNLTSVAPHRSTQSVGTTQPVTPTVTDSRPPVPXXXXXXXXXQLQPAPWTRPQXXXXXXXXXXTSVSPISQ-PAKPGELDSDKVADXXXXXXXXXXXXXXXXXXIALGKSKQAEEKRLSXXXXXXXXXXXXQRSGKRPRPVFPPIPEETKEPTSVLAVEKAYHALIAPKWTGEVFDAEPLLIPIELFVALGGKTLHMFTQWDVNERHLAPENVADYIRRARGLPEEFVSPVAFQIRRRLYEAGVICPPPPEIAEAENRRLIKIVVELRDGDTVQVLRDEFEWDLGCGSVNSPELFAQLLCTDANISPKYAPEVARALRAQLVRAHAIAYGDEETRKLAAKGMPQDTCVRDKLPPVGSALIKCTAEDIRVRDREENELIIRNLFVRPLLDSIPLESERRKAERVKKAAEERLRRELEIVRRIELAELARRNADIEKARIEAEAEAVQVYQNRNLDFRPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGH-ITFTRIAKKRRPSMRRGHDEKSGGRTTDKSEMHVAKKQKTEPTFQSGQGLPPDQRKKVILKLRVRKPNSTGQSKTISKRR 779
            MRGPT + PSEE LREMMRA XXXXXXXXXXXXXXXXXX TSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPL PVEGGVRW+KIQAVAREIAAKWTHPPGSSQYET TLH+VRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAVFVEKFAEG  DKFLEEARSGTRPIGRPAFYDSLNL +VA HRS Q      P  P VTDS        XXXXXX           XXXXXXXXX  + SP S+ PAK G  D +K  D                   + G++K+ EEKRLS            QRSGKRPRPVFPPIPEETKEPTSVLAVEKAYHAL APKWTGE  +AEPLLIPIELFV +G +TLH + QWDVNER L+PE VAD+IRRARGLPE+FV PVA QIRR LY+AGV+CPPPP++ EAENRRLIKIVVEL+DGDTV VLRDEFEWDLG GS+NSPELFAQLLCTDANI  K+A  VAR LRAQLVRAHAIAYGDEETRKLA  GM  D  +R KLP VGS+++KCT EDIRV+DREENEL IRN+FV+PLLD+IP E+ERRK ERV+KAAEE+LRRELE +RR+ELAELA+RNA++E+AR + E EA +VYQ RNLDFRPYLKLRVAR ESPSLWMPAAFDRRRRKQLTFPMTQPSRKT+GH  TF+RI+K+RR  +R+  +++S GR+  K+E H  KKQKTEP   +G+ + P++ K+V++++R++ P +  ++    KRR
Sbjct:    1 MRGPTVNAPSEEALREMMRAXXXXXXXXXXXXXXXXXXXXTSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPLQPVEGGVRWQKIQAVAREIAAKWTHPPGSSQYETDTLHHVRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAVFVEKFAEGQYDKFLEEARSGTRPIGRPAFYDSLNLATVAAHRSNQG-SLPPPNAPPVTDSX-------XXXXXXXXXXLXXXXXXXXXXXXXXXKLTTSPTSRSPAKSGLSDGEKGTDEEKPNGLEKSNDQEQT---SAGRNKKLEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSVLAVEKAYHALAAPKWTGEFSNAEPLLIPIELFVTVGSRTLHTYAQWDVNERQLSPEKVADHIRRARGLPEDFVKPVAHQIRRSLYDAGVVCPPPPDLPEAENRRLIKIVVELKDGDTVNVLRDEFEWDLGAGSLNSPELFAQLLCTDANIPQKHAAAVARTLRAQLVRAHAIAYGDEETRKLAENGMAADDTLRVKLPSVGSSMVKCTVEDIRVKDREENELAIRNVFVKPLLDNIPDEAERRKEERVQKAAEEKLRRELEAIRRVELAELAKRNAEVEQARKQVEEEATKVYQTRNLDFRPYLKLRVARGESPSLWMPAAFDRRRRKQLTFPMTQPSRKTTGHSFTFSRISKRRRSGVRKDPEDRSTGRSQPKTEGHPVKKQKTEPMPVAGKSISPEEYKRVMIRIRLKDPVTQNKAPAPKKRR 770          
BLAST of Gvermi951.t1 vs. uniprot
Match: R7QG43_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG43_CHOCR)

HSP 1 Score: 240 bits (613), Expect = 6.480e-69
Identity = 142/291 (48.80%), Postives = 185/291 (63.57%), Query Frame = 0
Query:  434 QIRRRLYEAGVIC--PPPPEIAEAENRRLIKIVVELRDGDTVQVLRDEFEWDLGCGSVNSPELFAQLLCTDANISPKYAPEVARALRAQLVRAHAIAYGDEETRKLAAKGMPQDTCVRDKLPPVGSALIKCTAEDIRVRDREENELIIRNLFVRPLLDSIPLESERRKAERVKKAAEERLRRELEIVRRIELAELARRNADIEKARIEAEAEAVQVYQNRNLDFRPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHITF-TRIAKKRRPSMRRGHDEKS 721
            QIRR L+ AG++C  PP P  A  ENRRLI+I VEL  G   Q L DEFEWDLG GS+NSPELFA  LC+DA I  K+A  VARA+R +LV AHAIAYGDEET+++A   +P+D  +R+ LP V S   +    D     RE NE  I + ++ PL+D++  ESERR  E  +   +ER R+E E  R +E  + A R A IEK+ +E E  A+++ + R LDFRPYL L++AR E    W PA FDR+RR+Q +FPMT  SR  +  I    R A+KRR + RR    +S
Sbjct:    2 QIRRALFSAGIVCAAPPAPPGANEENRRLIRIDVELGGGPGSQNLCDEFEWDLGIGSMNSPELFAHCLCSDAGIPQKHAATVARAIREKLVLAHAIAYGDEETKRMALSVLPEDDPLRNPLPKVFSVFSRDV--DHSAASREANEAEINDTYIAPLVDAVVAESERRSTECKRNMEDERKRKEFEATRAVEEVDEAERQAKIEKSLLEVEQAAIELQKERGLDFRPYLALKIARGERLGTWTPAVFDRKRRRQTSFPMTAVSRLHTAVIPAGPRAARKRRSTHRRDRRSES 290          
BLAST of Gvermi951.t1 vs. uniprot
Match: UPI000C6EDD9B (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EDD9B)

HSP 1 Score: 63.2 bits (152), Expect = 1.220e-6
Identity = 58/217 (26.73%), Postives = 94/217 (43.32%), Query Frame = 0
Query:  368 PKWTGEVFDAEPLLIPIELFVALGGKTLHMFTQWDVNERHLAPENVADYIRRARGLPEEFVSPVAFQIRRRLYEAGVICPPPPEIAE--AENRRLIKIVVELRDGDTVQVLRDEFEWDLGCGSVNSPELFAQLLCTDANISPKYAPEVARALRAQLVRAHAIAYGDEETRKLAAKGMPQDTCVRDKLPPVGSALIKCTAEDIRVRDREENELIIRNL 582
            P  T E      +L+PI L + + G  L     W+ NE  + PE  A+ +     LP     P   Q  R+  EA     P   + E  A+ R ++K+ + + +   V    D+FEWD+     NSPELFA  LC++  +  ++   +A ++R QL   H   Y   E      +   ++    D+  P    L     E  ++RD++ N   +R L
Sbjct:  273 PSVTHENASQSEVLVPIRLDMEIEGHKLRDTFTWNKNESLITPEQFAEVLCDDLDLPPLSFVPAISQSIRQQIEAF----PTDNLLEDQADQRVILKLNIHVGNISLV----DQFEWDMS-EKENSPELFANKLCSELGLGGEFVTAIAYSIRGQL-SWHQRTYAFSEAPLPTVEIPFRNQAEADQWCPFLETLTDAEMEK-KIRDQDRNTRRMRRL 478          
The following BLAST results are available for this feature:
BLAST of Gvermi951.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYU1_9FLOR0.000e+071.96SWI/SNF-related matrix-associated actin-dependent ... [more]
R7QG43_CHOCR6.480e-6948.80Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI000C6EDD9B1.220e-626.73SWI/SNF-related matrix-associated actin-dependent ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 593..643
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 715..737
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..226
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 706..780
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 279..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..266
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 290..656
NoneNo IPR availablePANTHERPTHR10019SNF5coord: 290..656
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..780
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 119..174
e-value: 1.0E-5
score: 27.1
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 458..523
e-value: 7.2E-8
score: 32.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:1477475..1479817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi951.t1Gvermi951.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 1477475..1479817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi951.t1 ID=Gvermi951.t1|Name=Gvermi951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=781bp
MRGPTASMPSEETLREMMRAAAATASAAAGDASVAAAAVTTSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVEGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAVFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTSVAPHRSTQSVGTTQPVTPTVTDSRPPVPPPVPPPPPPQLQPAPW
TRPQPPPPPSLPPSTSVSPISQPAKPGELDSDKVADGDKLNDQEKPQEQE
QEQSIALGKSKQAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETK
EPTSVLAVEKAYHALIAPKWTGEVFDAEPLLIPIELFVALGGKTLHMFTQ
WDVNERHLAPENVADYIRRARGLPEEFVSPVAFQIRRRLYEAGVICPPPP
EIAEAENRRLIKIVVELRDGDTVQVLRDEFEWDLGCGSVNSPELFAQLLC
TDANISPKYAPEVARALRAQLVRAHAIAYGDEETRKLAAKGMPQDTCVRD
KLPPVGSALIKCTAEDIRVRDREENELIIRNLFVRPLLDSIPLESERRKA
ERVKKAAEERLRRELEIVRRIELAELARRNADIEKARIEAEAEAVQVYQN
RNLDFRPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKTSGHI
TFTRIAKKRRPSMRRGHDEKSGGRTTDKSEMHVAKKQKTEPTFQSGQGLP
PDQRKKVILKLRVRKPNSTGQSKTISKRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010982Lambda_DNA-bd_dom_sf
IPR006939SNF5