Gvermi9428.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi9428.t1
Unique NameGvermi9428.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length276
Homology
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BLAST of Gvermi9428.t1 vs. uniprot
Match: A0A2V3IZ05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ05_9FLOR)

HSP 1 Score: 256 bits (653), Expect = 8.700e-82
Identity = 126/244 (51.64%), Postives = 165/244 (67.62%), Query Frame = 0 
Query:   34 QIFCSALFLPGSPSQEPSPQTTPASSFAVYLHCPEHQVRIAQPLAASFQSYRTASLKALLSALQLCNCICLQHVHVICDDDVLVDL--INDPASSTQSNDFEPDHPSSSENMAMWRAIQVAADAFKVRGASLNVVRNNGADGMHIARQLARSAITMHQYCSRCNSNYGPLRTPHSCDIDQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHELERHVECDCPEVLEEWFAHTKIVKN 275
            +++ +A F P +  + PS QT  A+++AVYLH  EH +R+AQPL    Q+YRTA L+++LSAL+L NC+CL +V +  DD  LV+L  +  P     +    P   +S E+MA+WRAI   AD F  RGA+L +++      +   R L  SA+  H+YCS C  NYGPL TPH C    QP LKRTGSLVE TD YGR +IV AVCP+CSA F+HLH+LERHVE DCPE+L+EWFAHTKIVK+
Sbjct:   25 ELYAAAFFRPPTAHRAPSKQTVAAATYAVYLHTSEHHLRLAQPLVTPHQTYRTAVLQSVLSALELANCLCLPYVRLCVDDAQLVNLFHVERPRRLADTVRSAPADFASPEDMALWRAILSLADTFSERGATLQLIQAQSCQSLRTVRSLCESAVHQHEYCSNCECNYGPLFTPHDCGPAYQPSLKRTGSLVERTDAYGRPQIVEAVCPRCSAKFQHLHQLERHVESDCPELLDEWFAHTKIVKD 268
The following BLAST results are available for this feature:
BLAST of Gvermi9428.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZ05_9FLOR8.700e-8251.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 73..128
e-value: 3.6E-5
score: 23.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 39..187
e-value: 2.9E-8
score: 35.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 57..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24230contigScGOVlb_24230:515679..516506 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9428.t1Gvermi9428.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24230 515679..516506 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi9428.t1 ID=Gvermi9428.t1|Name=Gvermi9428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=276bp
MPTLHGNKEQASLDVWASCSLEDCGDDPNFLPTQIFCSALFLPGSPSQEP
SPQTTPASSFAVYLHCPEHQVRIAQPLAASFQSYRTASLKALLSALQLCN
CICLQHVHVICDDDVLVDLINDPASSTQSNDFEPDHPSSSENMAMWRAIQ
VAADAFKVRGASLNVVRNNGADGMHIARQLARSAITMHQYCSRCNSNYGP
LRTPHSCDIDQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHE
LERHVECDCPEVLEEWFAHTKIVKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf