Gvermi9357.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi9357.t1
Unique NameGvermi9357.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length295
Homology
BLAST of Gvermi9357.t1 vs. uniprot
Match: A0A2V3IMY1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMY1_9FLOR)

HSP 1 Score: 292 bits (747), Expect = 1.990e-95
Identity = 163/252 (64.68%), Postives = 200/252 (79.37%), Query Frame = 0
Query:   39 KLPVRRLRAHLSFPEHDSLLADLCSGSQPRQLVALVRLTSCPPHEALALLQKSEILASSNLQVRLTALTTLGKLGQREQAGVLLQALESDRDHSIRAAAANALGNLLHPSQGEGVVQGYENVLRALIRAAE-DEHFIVRYAALVALGELANPIAVETLLPVVCNLAAPALEATAAVAAIGEMMDIERPTDEVLNAVKARAGDRDELVRAAVVRTLGRWYNVDSVRELLQQMNANEKRYGQSNHVKAILDDVL 289
            KLP RR RA L  P  +SLL DLCS SQ RQLVALV L+S PP E + +L+KS++L S NLQVR++A  TLGKLG RE+   L+ ALESD DHSIRAAAA+ LG+LL P+ GEGVV+G  + L AL+RAAE D HFIVRYAALV++GEL NP A++ +L VV +L+APALEATAAV AIG++ + +  T E+L+AV ARAGDR++LVRAAVVRTLGRW N +SV ELLQ+M  +EKR+GQS HV+AILDDVL
Sbjct:   36 KLPQRRPRAQLISPNAESLLDDLCSESQARQLVALVHLSSLPPGEGIWVLRKSDVLTSRNLQVRVSAFATLGKLGIREEGRTLIVALESDPDHSIRAAAASGLGDLLRPNDGEGVVRGQGDALEALVRAAEQDAHFIVRYAALVSVGELGNPAALDAVLRVVRDLSAPALEATAAVYAIGQLANDDALTGEILDAVSARAGDREDLVRAAVVRTLGRWSNANSVPELLQRMKGDEKRFGQSTHVQAILDDVL 287          
BLAST of Gvermi9357.t1 vs. uniprot
Match: R7QDZ2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDZ2_CHOCR)

HSP 1 Score: 171 bits (434), Expect = 2.420e-48
Identity = 106/235 (45.11%), Postives = 152/235 (64.68%), Query Frame = 0
Query:   52 PEHDSLLADLCSGSQPRQLVALVRLTSCPPHEALALLQKSEILASSNLQVRLTALTTLGKLGQREQAGVLLQALESDRD-HSIRAAAANALGNLLHPSQGEGVVQGYENVLRALIRAAEDEHFIVRYAALVALGELANPIAVETLLPVVCNLAAPALEATAAVAAIGEMMDIERPTDEVLNAVKARAGDRDELVRAAVVRTLGRWYNVDSVRELLQQMNANEKRYGQSNHVKAIL 285
            P+ ++LL  L  G Q  Q++ALV L   P  +A++LL +S +L S N QVRLTA+ TLGKLG   +A  L+  L+ D D +S+RAAAANALG LL P  G+G     E +   +  A  D+HFI++YAA+V +G L +  A++TL+P+  N A+  LEA AAV AIGE+  ++     V++ V +RA DR++LVRAAV +TL  W  V+     L +M  +E++YGQS+ V+AIL
Sbjct:   46 PDANALLEKLKGGVQHTQMLALVLLPQLPSKQAVSLLYESGVLDSENRQVRLTAVATLGKLGVPHEANRLVTVLKDDSDDYSVRAAAANALGYLL-PGSGDGSGLVGEALSALVDVATGDDHFILKYAAIVTIGNLGDKSAMDTLIPIAQNPASLPLEAAAAVTAIGEISAVDMVEASVVDVVISRAADREDLVRAAVAKTLKLWVTVERAASALARMKTDEEKYGQSDFVRAIL 279          
BLAST of Gvermi9357.t1 vs. uniprot
Match: U7QIE7_9CYAN (Phycocyanobilin lyase subunit beta n=2 Tax=Lyngbya TaxID=28073 RepID=U7QIE7_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.480e-6
Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 0
Query:   85 LALLQKSEILASSNLQVRLTALTTLGKLGQREQAGVLLQALESDRDHSIRAAAANALGNLLHPSQG--EGVVQGYENVLRALIRAAEDEHFIVRYAALVALGELANPI 190
            LA+L   E L   N   R  A+  L  +G      VLL+A  SD   S+R AAA  LG +        E +++     +  L +A++D  +IVRYAA+V L ELAN I
Sbjct:   63 LAVLPLLEQLDGYNYGARAWAIRALSSIGDPRGLNVLLEAAGSDFALSVRRAAARGLGTIHWEKMSVEEDILEAQIKAINTLFQASQDSEWIVRYAAIVGLQELANQI 170          
The following BLAST results are available for this feature:
BLAST of Gvermi9357.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IMY1_9FLOR1.990e-9564.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDZ2_CHOCR2.420e-4845.11Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
U7QIE7_9CYAN3.480e-637.04Phycocyanobilin lyase subunit beta n=2 Tax=Lyngbya... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004155PBS lyase HEAT-like repeatSMARTSM00567EZ_HEATcoord: 99..128
e-value: 0.52
score: 19.4
coord: 173..202
e-value: 42.0
score: 11.7
coord: 131..171
e-value: 3.3
score: 16.7
coord: 242..271
e-value: 270.0
score: 5.1
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 44..291
e-value: 6.7E-24
score: 86.8
NoneNo IPR availablePFAMPF13646HEAT_2coord: 121..196
e-value: 3.7E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR12697:SF5DEOXYHYPUSINE HYDROXYLASEcoord: 160..276
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 84..193
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 160..276
NoneNo IPR availablePANTHERPTHR12697:SF5DEOXYHYPUSINE HYDROXYLASEcoord: 84..193
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 160..195
score: 8.746901
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 56..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24230contigScGOVlb_24230:227990..228874 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9357.t1Gvermi9357.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24230 227990..228874 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi9357.t1 ID=Gvermi9357.t1|Name=Gvermi9357.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=295bp
MYTTNFVSRTCLFGNRHRQTSLPTKSPQKLHRRTPNFVKLPVRRLRAHLS
FPEHDSLLADLCSGSQPRQLVALVRLTSCPPHEALALLQKSEILASSNLQ
VRLTALTTLGKLGQREQAGVLLQALESDRDHSIRAAAANALGNLLHPSQG
EGVVQGYENVLRALIRAAEDEHFIVRYAALVALGELANPIAVETLLPVVC
NLAAPALEATAAVAAIGEMMDIERPTDEVLNAVKARAGDRDELVRAAVVR
TLGRWYNVDSVRELLQQMNANEKRYGQSNHVKAILDDVLKNDEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004155PBS_lyase_HEAT
IPR011989ARM-like
IPR021133HEAT_type_2
IPR016024ARM-type_fold