Gvermi933.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi933.t1
Unique NameGvermi933.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Homology
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A2V3J336_9FLOR (ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J336_9FLOR)

HSP 1 Score: 259 bits (661), Expect = 1.030e-86
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0
Query:   34 SPVSMADISKPRPGIGGPKGPQFGDPDRGGGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSFTH 167
            S + MADISKPRPGIGGPKGPQFGD DRGGGVAVITKPVTKKKTKRKSQT+YEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQM GLTSSIAPDSSFTH
Sbjct:    2 STIQMADISKPRPGIGGPKGPQFGDSDRGGGVAVITKPVTKKKTKRKSQTQYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMHGLTSSIAPDSSFTH 135          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A7S1T7M9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7M9_9RHOD)

HSP 1 Score: 194 bits (494), Expect = 5.760e-61
Identity = 100/136 (73.53%), Postives = 114/136 (83.82%), Query Frame = 0
Query:   32 RASPVSMADISKPRPGIGGPKGPQFGDPDRGGGVAVITKPVTKKK--TKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSF 165
            R   V MADI +PRP +GG KGP FG  ++G GV ++ +P+ KKK  T+R+ QT+ EPSWRVLLHNDDVHTFDYVT +IVKVVRT+SRKKAHRITMQAH+ GVATVTTTWKA AEEYCKGLQM GLTSSIAPDSSF
Sbjct:   22 RRGKVHMADIGRPRPDVGGGKGPTFGS-EKGSGV-LVAEPIVKKKPKTRREEQTDKEPSWRVLLHNDDVHTFDYVTMSIVKVVRTISRKKAHRITMQAHSQGVATVTTTWKALAEEYCKGLQMHGLTSSIAPDSSF 155          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A7S0ZKG5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKG5_9RHOD)

HSP 1 Score: 187 bits (474), Expect = 1.550e-57
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 0
Query:   28 RKPIRASPVSMADISKPRPGIGGPKGPQFGDPDRG-GGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSF 165
            RK +     SMADI + +P IGG K  Q    D G GGV  I KP  KKK+KR+ +T+ EP+WRVLLHNDDVHTFDYVTG IVKVV+TVSR+KAHRITMQAH+ G+ATVTTTWKA AEEYCKGLQ+QGLTSSIAPDSSF
Sbjct:   50 RKAVLLQIDSMADIGRSKPNIGGGKFEQ----DTGKGGVVTIQKPEVKKKSKREEKTDREPNWRVLLHNDDVHTFDYVTGVIVKVVKTVSRRKAHRITMQAHSHGIATVTTTWKAMAEEYCKGLQVQGLTSSIAPDSSF 184          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A7S1TKB3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKB3_9RHOD)

HSP 1 Score: 183 bits (465), Expect = 4.490e-56
Identity = 96/131 (73.28%), Postives = 107/131 (81.68%), Query Frame = 0
Query:   37 SMADISKPRPGIGGPKGPQFGDPDRGG--GVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSF 165
            +MADI + +P IGG K   F   D GG  GV  I KP  KKK+KR+ QT+ EP+WRVLLHNDDVHTFDYVTG+IVKVV+TVSR+KAHRITM AH+ GVATVTTTWKA AEEYCKGLQM GLTSSIAPDSSF
Sbjct:   64 AMADIGRSKPNIGGGK---FQREDTGGKGGVVTIQKPEVKKKSKREEQTDREPNWRVLLHNDDVHTFDYVTGSIVKVVKTVSRRKAHRITMTAHSFGVATVTTTWKALAEEYCKGLQMTGLTSSIAPDSSF 191          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A5J4Z744_PORPP (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z744_PORPP)

HSP 1 Score: 178 bits (452), Expect = 5.570e-54
Identity = 95/129 (73.64%), Postives = 104/129 (80.62%), Query Frame = 0
Query:   38 MADISKPRPGIGGPKGPQFGDPDRGGGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSFT 166
            MADI K  P IGG K  Q  D  RG  V  I KP  KKK++RKS+TE E +WRVLLHNDDVHTFDYVTG IV+VVRTVSR+KAHRITM AH+ G+ATVTTTWKA AEEYCKGLQ QGLTSSIAPDSSF+
Sbjct:   76 MADIGKGSPNIGGGKFEQ--DTSRGN-VITIQKPEVKKKSERKSETEKEKNWRVLLHNDDVHTFDYVTGIIVQVVRTVSRRKAHRITMTAHSHGIATVTTTWKAMAEEYCKGLQRQGLTSSIAPDSSFS 201          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A7J7IDU9_9RHOD (ClpS domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDU9_9RHOD)

HSP 1 Score: 152 bits (384), Expect = 1.470e-43
Identity = 80/124 (64.52%), Postives = 94/124 (75.81%), Query Frame = 0
Query:   44 PRPGIGGPKGPQFGDPDR-GGGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSFT 166
            P  G G P G + GD +R GGGVAVITK  TK   + K +T  EP WRVLLHND++HTFDYVT  +VKVV+T++R KAHRIT+ AH +GVATVTTTWK  AEEYC+GLQ +GLTSSI PD S T
Sbjct:   89 PGRGAGAPGGDESGDREREGGGVAVITK--TKPAVREKEKTAKEPMWRVLLHNDNIHTFDYVTYTLVKVVKTLTRYKAHRITVHAHKAGVATVTTTWKQLAEEYCQGLQREGLTSSIMPDHSST 210          
BLAST of Gvermi933.t1 vs. uniprot
Match: M1VIC4_CYAM1 (ClpS domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIC4_CYAM1)

HSP 1 Score: 151 bits (381), Expect = 4.180e-43
Identity = 79/124 (63.71%), Postives = 94/124 (75.81%), Query Frame = 0
Query:   44 PRPGIGGPKGPQFGDPDR-GGGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDSSFT 166
            P  G G P G + G+ +R GGGVAVITK  TK   + K +T  EP WRVLLHND++HTFDYVT  +VKVV+T++R KAHRIT+ AH +GVATVTTTWK  AEEYC+GLQ +GLTSSI PD S T
Sbjct:   89 PGTGAGAPGGDESGEREREGGGVAVITK--TKPAVREKEKTAKEPMWRVLLHNDNIHTFDYVTHTLVKVVKTLTRYKAHRITVHAHKAGVATVTTTWKQLAEEYCQGLQREGLTSSIMPDHSGT 210          
BLAST of Gvermi933.t1 vs. uniprot
Match: L1J9P0_GUITC (ClpS domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1J9P0_GUITC)

HSP 1 Score: 145 bits (367), Expect = 3.230e-41
Identity = 78/120 (65.00%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   48 IGGPKGPQFGDPDRGGG--VAVITKPVTKKKT---KRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPD 162
            +GG  GP F     GGG  VAV+TKP    K    ++K Q + EP WRVLLHNDDVHTFDYV   IVKVVRTV+RKKAHRITM+AH SG+ATVTTTWK  A EY  GLQ  GLTSSIAP+
Sbjct:   71 VGGKGGPDFSKDQEGGGAGVAVLTKPPDLDKAADYEKKEQVDKEPIWRVLLHNDDVHTFDYVIDTIVKVVRTVTRKKAHRITMEAHKSGLATVTTTWKQLAREYSLGLQKAGLTSSIAPE 190          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A7S0P2A3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P2A3_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 9.610e-38
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 0
Query:   63 GGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPD 162
            G  AVI +P    K + K + E EPSWRVLLHNDDVHTFDYVT AIV+VV+T++RKKAHRIT+Q H+ G ATVTTTWK  A+ YC  LQ  GLTSSIAPD
Sbjct:   87 GRTAVIARPKPVTKERSKEEVENEPSWRVLLHNDDVHTFDYVTMAIVQVVKTITRKKAHRITVQCHSMGTATVTTTWKQMAKTYCLKLQKYGLTSSIAPD 186          
BLAST of Gvermi933.t1 vs. uniprot
Match: A0A7S0TM92_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TM92_HEMAN)

HSP 1 Score: 134 bits (337), Expect = 1.160e-37
Identity = 70/105 (66.67%), Postives = 79/105 (75.24%), Query Frame = 0
Query:   62 GGGVAVITKPVTKKKT---KRKSQTEYEPSWRVLLHNDDVHTFDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGLQMQGLTSSIAPDS 163
            G GVAV+TKP    K    ++K   + EP WRVLLHNDDVHTFDYV   IVKVVRTV+RKKAHRITM+AH SG+ATVTTTWK  A EY   LQ  GLTSSIAP++
Sbjct:    9 GAGVAVLTKPPDLDKASDLEKKEAVDKEPIWRVLLHNDDVHTFDYVIDTIVKVVRTVTRKKAHRITMEAHKSGLATVTTTWKQLAREYSVKLQKAGLTSSIAPEN 113          
The following BLAST results are available for this feature:
BLAST of Gvermi933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J336_9FLOR1.030e-8695.52ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A7S1T7M9_9RHOD5.760e-6173.53Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZKG5_9RHOD1.550e-5770.50Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1TKB3_9RHOD4.490e-5673.28Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A5J4Z744_PORPP5.570e-5473.64ATP-dependent Clp protease adapter protein ClpS n=... [more]
A0A7J7IDU9_9RHOD1.470e-4364.52ClpS domain-containing protein n=1 Tax=Cyanidiococ... [more]
M1VIC4_CYAM14.180e-4363.71ClpS domain-containing protein n=1 Tax=Cyanidiosch... [more]
L1J9P0_GUITC3.230e-4165.00ClpS domain-containing protein n=2 Tax=Geminigerac... [more]
A0A7S0P2A3_9EUKA9.610e-3867.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0TM92_HEMAN1.160e-3766.67Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 66..161
e-value: 1.1E-21
score: 78.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 82..160
IPR003769Adaptor protein ClpS, corePFAMPF02617ClpScoord: 86..152
e-value: 1.0E-17
score: 63.6
NoneNo IPR availablePANTHERPTHR33473:SF1ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTICcoord: 61..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..167
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
IPR022935ATP-dependent Clp protease adaptor protein ClpSPANTHERPTHR33473ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTICcoord: 61..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:1269037..1269622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi933.t1Gvermi933.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 1269037..1269622 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi933.t1 ID=Gvermi933.t1|Name=Gvermi933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MQATHCAFISQAPFLFKAVSSSAICTCRKPIRASPVSMADISKPRPGIGG
PKGPQFGDPDRGGGVAVITKPVTKKKTKRKSQTEYEPSWRVLLHNDDVHT
FDYVTGAIVKVVRTVSRKKAHRITMQAHASGVATVTTTWKAQAEEYCKGL
QMQGLTSSIAPDSSFTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
IPR022935ClpS