Gvermi9256.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi9256.t1
Unique NameGvermi9256.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length320
Homology
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BLAST of Gvermi9256.t1 vs. uniprot
Match: K0T3E7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T3E7_THAOC)

HSP 1 Score: 99.4 bits (246), Expect = 7.530e-20
Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 0 
Query:    1 MADKITGGDARRWTYGYKYMVHHIDRRYYNLIGPNGVRHWTRRFPEFAESVRKAIAKTRTYVDSTTGQTTVVPGVLFPEGGFSVVGFLDCTDYKICKPRTGP-NGDYVGAMRRTEAYETQRAVYSGHRHHHGVRVCSFCLPNGLTASVCGPTSSRRHDLRILGWFSMDALLHLIQVAVFGPLFAGW---YSFYGDKAY 194
            + D I GG A  W++G+ +++ ++D RY  ++G  G+  +   F  F   + +   +   Y D     T +  G+L     F + GF+DC+ ++  +P +   N  Y+GA R     + QRAVY+G + HHG+++ +  LPNGL+ +V GP S+R  D    G   M  +   +QV     L  GW   Y  +GD  Y
Sbjct:  208 LCDLIFGGHASVWSHGFPWILRYLDDRYETIVGHQGLVRFAGLFHHFYSRIERYCQRHLRYYDINGTMTRINRGLLHLP--FLIFGFIDCSVFRTYRPFSSTENQFYIGAQRNRRYQDAQRAVYTGWKKHHGIKIETVMLPNGLS-TVYGPVSARVFDTS--GVAFMSGIDQFLQV-----LMQGWNITYYLFGDGVY 395
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BLAST of Gvermi9256.t1 vs. uniprot
Match: K0TB80_THAOC (DDE Tnp4 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TB80_THAOC)

HSP 1 Score: 84.0 bits (206), Expect = 3.090e-14
Identity = 64/241 (26.56%), Postives = 113/241 (46.89%), Query Frame = 0 
Query:   36 GVRHWTRRFPEFAESVRKAIAKTRTYVDSTTGQTTVVPGVLFPEGGFSVVGFLDCTDYKICKPRTGP-NGDYVGAMRRTEAYETQRAVYSGHRHHHGVRVCSFCLPNGLTASVCGPTSSRRHDLRILGWFSMDALLHLIQVAVFGPLFAGW---YSFYGDKAYGQGQYDCIKACHDAPVG-GYLTLAEMEENRVMKCVRICVEWSYAQNSNLWKLVDNHTHYKLESDASIVLAQVRVMHLL 271
            G+  +  RF  F   + +   +   Y D     T +  G+++    F + GF+DC+ +++ +P +   N  Y G+ R    ++ QRAVY+G +  HG+++ +  LPNGL+ +V GP S+R  D    G   M  +   +QV     L  GW   Y  +GD  Y       I++          LT  ++  N+ +K  R  +E +YA   N+++L    +++KL        +Q+R+   L
Sbjct:  302 GLGRFASRFHYFYTQIERYCQRALDYYDINGTLTHINVGLIYLP--FIIFGFIDCSVFRVYRPFSSTVNQFYAGSQRNPRYHDAQRAVYTGWKKFHGIKIETVMLPNGLS-TVYGPVSARVFDTT--GVAVMSGIDQFLQV-----LMQGWNITYYLFGDGVYNTSTLSRIRSYFRTYRRVDVLTRDQIVVNQRLKACRELIEHTYADLQNIFRLCPLPSNFKLGQSHPYAQSQLRLAKAL 532
The following BLAST results are available for this feature:
BLAST of Gvermi9256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
K0T3E7_THAOC7.530e-2030.81Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
K0TB80_THAOC3.090e-1426.56DDE Tnp4 domain-containing protein n=1 Tax=Thalass... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 111..262
e-value: 3.1E-10
score: 40.0
NoneNo IPR availableTMHMMTMhelixcoord: 168..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3327contigScGOVlb_3327:61..1020 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9256.t1Gvermi9256.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3327 61..1020 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi9256.t1 ID=Gvermi9256.t1|Name=Gvermi9256.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=320bp
MADKITGGDARRWTYGYKYMVHHIDRRYYNLIGPNGVRHWTRRFPEFAES
VRKAIAKTRTYVDSTTGQTTVVPGVLFPEGGFSVVGFLDCTDYKICKPRT
GPNGDYVGAMRRTEAYETQRAVYSGHRHHHGVRVCSFCLPNGLTASVCGP
TSSRRHDLRILGWFSMDALLHLIQVAVFGPLFAGWYSFYGDKAYGQGQYD
CIKACHDAPVGGYLTLAEMEENRVMKCVRICVEWSYAQNSNLWKLVDNHT
HYKLESDASIVLAQVRVMHLLTNCYTCLHGNVISSQRSFAHNPPSLDDYL
VVLRHPPANPAQLNNIQFF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom