Gvermi924.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi924.t1
Unique NameGvermi924.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length289
Homology
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A2V3J5W6_9FLOR (Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5W6_9FLOR)

HSP 1 Score: 247 bits (630), Expect = 6.270e-75
Identity = 126/215 (58.60%), Postives = 161/215 (74.88%), Query Frame = 0
Query:    5 LLLLVTLFGFWAISCAVPTVIRQETDTD-TCPVDGVCFALDQSGSISINYPDLQAFVVAVAREIETNSPSTLYSAFGFANNVNTIQSSTSQLESEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKDQGIGIITVGIGNGVSSQYLQQLATSPEFFIASTFTTLPIEVFKLTQMLCELPAVSPLPTD 218
            LL+ +    F ++S AVPTV+RQ+  ++ TCP+D VCFA+DQSGSI +NY  +Q FV+ VAREIE+ S  TL+SA+GF+N+V TIQ+STSQLE+ FVPAV A   P GSTNM+AGLN CF +++D  G KVIILLTDG DN  P A  LAP IKD GI I+TVGIG GVS+ YL+QLA++P+FFI   F+TLP EV  L+QM C+    SP P++
Sbjct:    3 LLIFLAFSAFLSLSIAVPTVVRQDDSSEETCPIDSVCFAMDQSGSIFLNYGAIQNFVIEVAREIESRSFGTLFSAYGFSNSVTTIQTSTSQLETLFVPAVTASGPPSGSTNMYAGLNGCFNDIADQPGNKVIILLTDGQDNAFPLASSLAPVIKDAGITIVTVGIGAGVSAPYLEQLASTPDFFIQLMFSTLPSEVVSLSQMTCDAVDASPEPSE 217          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A2V3IFK7_9FLOR (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFK7_9FLOR)

HSP 1 Score: 201 bits (511), Expect = 8.290e-59
Identity = 100/214 (46.73%), Postives = 147/214 (68.69%), Query Frame = 0
Query:    8 LVTLFGFWAISCAVPTVIRQETDT----DTCPVDGVCFALDQSGSI-SINYPDLQAFVVAVAREIETNSPSTLYSAFGFANNVNTIQSSTSQLESEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKDQGIGIITVGIGNGVSSQYLQQLATSPEFFIASTFTTLPIEVFKLTQMLCELPAVSPLP 216
            +++L   +A + ++P  I Q+  T    + C ++ VCF LD+SGSI S  Y   Q FV++V+R I + +  TLYSA+GFA++ + IQ+STS LE  FVP +N      GSTNM+AGLNACF E++   G +VI+L+TDG DNG+P A  LAPT+K  G+ I+T+G+G+GV   YL+ LAT+P FFI STF++LP +V ++ +  C++  VSP+P
Sbjct:    7 ILSLLALFACAVSIPFSIHQDLPTNDTSEDCSINSVCFVLDESGSIQSSEYIVEQQFVISVSRVISSRTNGTLYSAYGFASSASVIQASTSNLEGTFVPVINQSQQSGGSTNMYAGLNACFNEVNGNAGNRVIVLITDGGDNGNPLAEALAPTVKAAGVAIVTIGVGSGVDEDYLRSLATTPAFFIPSTFSSLPADVVRVAESSCDVVEVSPVP 220          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A2V3IQ26_9FLOR (Matrilin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ26_9FLOR)

HSP 1 Score: 127 bits (319), Expect = 1.570e-30
Identity = 68/188 (36.17%), Postives = 112/188 (59.57%), Query Frame = 0
Query:   25 IRQETDTDTCPVDGVCFALDQSGSIS-INYPDLQAFVVAVAREIETNSPSTLYSAFGFANNVNTIQSSTSQLESEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKDQGIGIITVGIGNGVSSQYLQQLATSPEFFI-ASTFTTLPIEVFKLTQMLCELP 210
            +R  +   +CP   VCFA+D+SGSIS  ++ +    +VA+A+E+ T +P +  SA GF++    IQS T+ +  EFV A+       G+T+  A L  C T+++     ++I+LLTDG DN  PF   +A  IK+ GI IIT+GIG+G+++  L+ +A+SP+ FI    F++    +  +   +C +P
Sbjct:   65 LRITSAQRSCPPLNVCFAIDESGSISPTDFIEQTEAIVAIAQELSTFAPGSTLSAVGFSSFAELIQSPTTDINGEFVQAIQGNSQLGGTTSSGAALQLCQTQIASAADPRIIVLLTDGADNTMPFGTSVAGGIKNNGIIIITIGIGSGINAPSLRSIASSPDLFIFVDDFSSFEDSIEVIVDTICPVP 252          
BLAST of Gvermi924.t1 vs. uniprot
Match: Q7XZ43_GRIJA (Alpha 1 type VII collagen (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ43_GRIJA)

HSP 1 Score: 82.8 bits (203), Expect = 1.870e-15
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 0
Query:   34 CPVDGVCFALDQSGSIS-INYPDLQAFVVAVAREIETNSPSTLYSAFGFAN--NVNTIQSSTSQLESE---FVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKDQGIGIITVGIGNGVSSQYLQQ-LATSPEFF 187
            CP   +C+A+D+S SIS   +  L A +V +     T +P + ++A  F+   N   +    S L S+   F+ A+ A     G T+   GLN C  EL      KVI+L+TDGVDN +P  +D+   IK  G  +  VGIG+ ++   L+  +++SP+ +
Sbjct:   25 CPPAKICYAIDESESISGTEFAQLNAALVEITNTFSTAAPGSSFAAVDFSGLQNGGGVGEVVSPLTSDVTTFLAALAANPKRGGFTSSGTGLNLCDQELDGQAQPKVILLITDGVDNRNPIGVDVEAAIKANGNTVAVVGIGDNLNDDDLRDTISSSPDLY 185          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A7S1XH88_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XH88_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 3.790e-15
Identity = 61/185 (32.97%), Postives = 95/185 (51.35%), Query Frame = 0
Query:   34 CPVDGVCFALDQSGSIS-INYPDLQAFVVAVAREIETNSPS----TLYSAFGFANNVNTIQSSTSQLESEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKD-QGIGIITVGIG-NGVSSQYLQQLATSPEFFIAST-FTTLPIEVFKLTQMLCELP 210
            CP++ +CFA+D+SGSIS   +      V  VA  IE+ S S    T Y A GF+++ N +   T+   + F   V++     G T+    L  C   +    G +VI+L+TDG  +    A   A  IK      ++T+G+G    ++  L+ LA+ PEFF+ ST F+TL  +  K+ Q +C  P
Sbjct:   23 CPINSICFAIDESGSISGTQFIAENTAVKNVADSIESISISLGISTTYGAVGFSSSANVVSPLTNL--ATFKGNVDSNPKSGGGTSYGPALQQCRNLIGPQAGVRVIVLVTDGQPSDPAAATSEANIIKSLPNTFLVTIGVGLTSTATTLLRDLASGPEFFVGSTDFSTLTTQTGKILQAICPPP 205          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A7S1XGG3_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XGG3_9RHOD)

HSP 1 Score: 83.6 bits (205), Expect = 1.160e-14
Identity = 72/223 (32.29%), Postives = 107/223 (47.98%), Query Frame = 0
Query:    1 MRSYLLLLVTLFGFWAISCAVPTVIRQETDTDTCPVDGVCFALDQSGSIS-INYPDLQAFVVAVAREIETNSP----STLYSAFGFANNVNTIQSSTSQLESEFVPAVNAPVTPIGSTNMFA-GLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKDQ-GIGIITVGIGNGVSSQ-YLQQLATSPEFFI-ASTFTTLPIEVFKLTQMLCELPAVSP 214
            M   LL LV   G W  + + P           C V+ +CFA+D+SGS+S  ++   ++ VV VA  I++       S  + A  F  NV  +   T+ L S F   VN   +  G    +A  L AC + LS  TG +VI+LLTDG  + +  A   A  IK      ++TVG+    S +  LQ LA+ PE+F+ A++F  L  +   +   +C  P V P
Sbjct:   22 MALTLLHLVVFVGVWVAAHSQP-----------CAVNSICFAIDESGSVSQADFDKEKSAVVDVATRIQSIDTALGISPRFGAIAFDGNVQPVSPLTTSL-SAFTTTVNGFSSRFGGDTRYAPALQACQSLLSGQTGVRVIVLLTDGAPSDATAATTAANAIKSTPNTFLVTVGVNLAASGKTLLQGLASGPEYFVDATSFVDLQQKTGDIVAAMCP-PPVCP 231          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A7S1XDR4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDR4_9RHOD)

HSP 1 Score: 78.6 bits (192), Expect = 3.380e-13
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = 0
Query:   34 CPVDGVCFALDQSGSISIN-YPDLQAFVVAVAREIETNSP----STLYSAFGFANNVNTIQSSTSQLESEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAIDLAPTIKDQ-GIGIITVGIGNGVS-SQYLQQLATSPEFFI-ASTFTTLPIEVFKLTQMLCELP 210
            C ++ +CFA+D+SGSIS + + D    V+ VAR ++  S      T Y+A  F  + +T+ S T     E     N P      T        C + LS  +G + I+L+TDG  + +  AI  A  +K      IITVG+G   S + +LQ LA+ P+FF  AS+F+ L  E  K+ Q +C  P
Sbjct:   33 CTINNICFAIDESGSISDSAFVDETNVVLQVARALDMISKMQGIQTKYAAIDFGASESTVSSLTDVASFE-QRVSNNPHRKDPDTLYAPAFERCGSLLSGASGVRAIVLVTDGAPSDTTAAIVAANALKSMPNTFIITVGVGLTSSRASFLQSLASGPDFFAEASSFSALKFE--KVVQAICPPP 214          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A7S2Z9E6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9E6_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 4.630e-9
Identity = 65/211 (30.81%), Postives = 92/211 (43.60%), Query Frame = 0
Query:   19 CAVPTVIRQETDTDTCPVDGVCFALDQSGSI-------SINYPDLQAFVVAVARE-IETNSPSTL-YSAFGFANNVNTIQSSTSQLE-SEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGT-KVIILLTDGVDN-GSPFAIDL---APTIKDQGIGIITVGIGNGVSSQYLQQLATSPEFFIASTFTTLPIEVFKLTQMLCELPAVSP 214
            C V  +  Q  D DT      CFA+D S S+       S+     Q   VA+  E IE N    L Y    F ++   I   T+    SE V  +  P    G TN+ + L+ C   LS      +V+IL+TDGV   G+  + DL      IKD GI I+T+G G+ + +  L  L+TS  F    + T     +  L + +CE     P
Sbjct:  201 CTVELLCSQSCDIDTA---AFCFAVDVSQSLWDPVIGGSVEAFQSQIDFVAMGIEAIENNGGVNLEYGVVAFGDDGEVIADLTTAANASEAVSEIAVPTVKFG-TNIESALSTCEAVLSGSPKEFRVLILITDGVPTVGNTSSADLEAQGDAIKDAGIQIVTIGAGDFIDANLLNNLSTSGSFISVDSITDFTSALNDLLEEVCERSLTVP 407          
BLAST of Gvermi924.t1 vs. uniprot
Match: A0A815Z0K5_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A815Z0K5_9BILA)

HSP 1 Score: 67.0 bits (162), Expect = 8.270e-9
Identity = 55/199 (27.64%), Postives = 83/199 (41.71%), Query Frame = 0
Query:   32 DTCPVD---GVCFALDQSGSISINYPDLQ-AFVVAVAREIETNSPSTLYSAFGFANNVNTIQSSTSQLE-SEFVPAVNAPVTPIGSTNMFAGLNACFTELSDLTGTK--------VIILLTDGVDNGSPFAIDLAPTIKDQGIGIITVGIGNGVSSQYLQQLATSP---EFFIASTFTTLPIEVFKLTQMLCELPAVSP 214
            DTC  +    +   +D SGS+  +   LQ  FV  +  ++      T      ++ NV T+ +     E  + +  VN      GSTN    L    T  S   G +        +I L+TDG  +     I+ A  +KD GI I+TVGIGN +    L    T P    +F  S +  L  ++ + T  +C  PA  P
Sbjct:  308 DTCSQELKLDLGIVMDSSGSVGSSNFQLQLTFVRDLLSKVNVGENKTHVGIINYSTNVQTLTNLNKDYELRQKIQQVNKANFIGGSTNTAGALQQANTVFSPANGLRPEGEGAQPLIFLITDGQSDDQTATINAAAVLKDNGIHIVTVGIGNSLDLVELTAACTPPAYENYFPMSNYAALDQKIAQFTSKVCSEPAPIP 506          
BLAST of Gvermi924.t1 vs. uniprot
Match: UPI0009E292AE (collagen alpha-6(VI) chain-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E292AE)

HSP 1 Score: 64.7 bits (156), Expect = 5.200e-8
Identity = 59/182 (32.42%), Postives = 85/182 (46.70%), Query Frame = 0
Query:   39 VCFALDQSGSIS-INYPDLQAFVVAVAREIETNSPSTLYSAFGFANNVNTIQSSTSQLESE-FVPAVNAPVTPIGSTNMFAGLNACFTEL------SDLTGTKVIILLTDGVDNGSPFAIDL---APTIKDQGIGIITVGIGNGVSSQYLQQLATSP-EFFIASTFTTLPIEVFKLTQMLCE 208
            V F +D SGSIS  NY  L+ FV  +A     +   +  +   ++   +T    T    SE F  AV       G T +   L   + +L      S     K+  LLTDG    SP AI L   A  +K++G+ +IT+GIG  V  + L+ +A+S  +  +A TF  L  EV  LT+  CE
Sbjct:   34 VAFLIDSSGSISGKNYRKLKTFVANLAANFNISPRGSRAAVVLYSTGASTDIKFTDFTSSESFGRAVQQLRHHRGFTRIDLALQRAYYDLFSPRADSRYDVPKLAFLLTDGEQTPSPGAIPLDRAARFLKNEGVRLITIGIGKNVKEEELKSIASSDKDVILAETFDGLLEEVEPLTKSACE 215          
The following BLAST results are available for this feature:
BLAST of Gvermi924.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A2V3J5W6_9FLOR6.270e-7558.60Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis... [more]
A0A2V3IFK7_9FLOR8.290e-5946.73Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3IQ26_9FLOR1.570e-3036.17Matrilin-2 n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
Q7XZ43_GRIJA1.870e-1532.92Alpha 1 type VII collagen (Fragment) n=1 Tax=Griff... [more]
A0A7S1XH88_9RHOD3.790e-1532.97Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1XGG3_9RHOD1.160e-1432.29Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1XDR4_9RHOD3.380e-1334.05Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S2Z9E6_9RHOD4.630e-930.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A815Z0K5_9BILA8.270e-927.64Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
UPI0009E292AE5.200e-832.42collagen alpha-6(VI) chain-like n=1 Tax=Orbicella ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 35..207
e-value: 3.6E-16
score: 69.7
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 39..196
e-value: 8.4E-19
score: 68.5
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 38..209
score: 14.954868
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 35..209
e-value: 2.1E-25
score: 91.7
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 39..208
NoneNo IPR availablePIRSRPIRSR038023-1PIRSR038023-1coord: 38..185
e-value: 4.3E-5
score: 20.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..288
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..288
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0
NoneNo IPR availableCDDcd00198vWFAcoord: 39..185
e-value: 3.28028E-10
score: 55.6498
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:1248515..1249463 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi924.t1Gvermi924.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 1248515..1249463 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi924.t1 ID=Gvermi924.t1|Name=Gvermi924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=289bp
MRSYLLLLVTLFGFWAISCAVPTVIRQETDTDTCPVDGVCFALDQSGSIS
INYPDLQAFVVAVAREIETNSPSTLYSAFGFANNVNTIQSSTSQLESEFV
PAVNAPVTPIGSTNMFAGLNACFTELSDLTGTKVIILLTDGVDNGSPFAI
DLAPTIKDQGIGIITVGIGNGVSSQYLQQLATSPEFFIASTFTTLPIEVF
KLTQMLCELPAVSPLPTDGEIENPGTSETPEVSVSPEITETTEAIPTPEV
SATPVVSETPEVSETAEVIPTPEVSATPEVSKSPRRRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf