Gvermi920.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi920.t1
Unique NameGvermi920.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length152
Homology
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BLAST of Gvermi920.t1 vs. uniprot
Match: A0A2V3J366_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J366_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 6.150e-17
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 0 
Query:    1 MSPTTSNQRIAISSLLNDPVRDPIRPPQPSSSHSKSYQCDQCLKRFTQKADVRKHQKTVHEKAR 64
            M+   SNQRIAI SLLNDP+R+P RP   S+   K ++C+QC KRFTQ+ADVRKH+KTVHEKAR
Sbjct:   69 MAVANSNQRIAIPSLLNDPIREPGRPSS-STPQIKLFECEQCFKRFTQRADVRKHKKTVHEKAR 131
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BLAST of Gvermi920.t1 vs. uniprot
Match: R7Q3E8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3E8_CHOCR)

HSP 1 Score: 54.3 bits (129), Expect = 2.130e-6
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    4 TTSNQRIAISSLLNDPVRDPIRPPQPSSSHSKSYQCDQCLKRFTQKADVRKHQKTVH 60
            ++ N R+AI +LLND  RD         S    Y C+ C+K FTQ+ADVRKH+KTVH
Sbjct:    6 SSGNHRMAIHTLLNDSNRDM------QHSRMNGYNCELCMKNFTQRADVRKHKKTVH 56
The following BLAST results are available for this feature:
BLAST of Gvermi920.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J366_9FLOR6.150e-1765.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3E8_CHOCR2.130e-649.12Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 124..147
e-value: 0.044
score: 22.9
coord: 95..118
e-value: 0.014
score: 24.6
coord: 37..60
e-value: 0.0028
score: 26.9
coord: 66..89
e-value: 0.001
score: 28.3
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 124..147
e-value: 1.5E-4
score: 22.0
coord: 37..60
e-value: 3.6E-4
score: 20.8
coord: 95..118
e-value: 0.0017
score: 18.7
coord: 66..89
e-value: 0.0016
score: 18.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 68..89
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 39..60
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 97..118
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 126..147
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 124..147
score: 10.761805
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 66..94
score: 12.860899
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 95..123
score: 13.047947
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 37..65
score: 12.611502
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 91..119
e-value: 7.8E-6
score: 27.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 62..90
e-value: 6.2E-8
score: 34.2
coord: 120..151
e-value: 3.0E-7
score: 32.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 35..61
e-value: 1.8E-7
score: 33.0
NoneNo IPR availablePANTHERPTHR24388:SF50GROWTH FACTOR-INDEPENDENT 1A TRANSCRIPTION REPRESSOR B-RELATEDcoord: 33..145
NoneNo IPR availablePANTHERPTHR24388ZINC FINGER PROTEINcoord: 33..145
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 75..133
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 35..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:1233847..1234419 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi920.t1Gvermi920.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 1233847..1234419 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi920.t1 ID=Gvermi920.t1|Name=Gvermi920.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=152bp
MSPTTSNQRIAISSLLNDPVRDPIRPPQPSSSHSKSYQCDQCLKRFTQKA
DVRKHQKTVHEKARDYHCDECSLSFGERGNLNKHVRSIHRKERNFVCTQC
PASFPFRNGLTEHQRMKHSDDRPFECTRCPASFKKKSHLQRHTSVVHKVN
V*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf