Gvermi919.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi919.t1
Unique Name	Gvermi919.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	428

Homology

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BLAST of Gvermi919.t1 vs. uniprot
Match: A0A2V3J3S2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3S2_9FLOR)

HSP 1 Score: 115 bits (288), Expect = 8.110e-25
Identity = 120/414 (28.99%), Postives = 191/414 (46.14%), Query Frame = 0

Query:   58 TVSEAHSALHRVISLIDPLSKPSPHGPQAYSVDFVTKCIMAGKLLDIDSFRIPHCND--PPRNAQRSRSPSLKSTPVKQA---------------------------------NGTQSPRTPNRSKSQSRPSAEDKKNDARQDSHHKPPSSEPCNPPQLLPTSDSGEPQERDEIKPVVDTRAAIERAVKHSERRDRGSSIVLEEISPPADTEQWTPDEDQKLRQICDALQTKLEEQQKDLNHMFLLNTWKALGNSNVLPPDRTIEECRERALYLRISKKEQDKPAVDKERRQTKPARRRS----EEIQDDEIQPDRKERRATKVRRVLKLDREGAAKTRNKAK------VNTRQPQREDLIRRLVRSLSYETQMTQRRVFQVLRANSGDPETTKAVLERERRQSEKARRLRRSK 426
            TVS   +    +ISLIDPLS+PSP G   +S+++V  CI AGKLL+++ FR+   N   P R A   R PS +   + QA                                 NG  S +   ++    R S +  +   +QD +H  P S   +   + P +++      D++   +D  A   + VKH  +R+R     LE   P     +WT  ED  + ++C  ++ K  +       +  +  W+ L    +LP +R  +ECRERA  L+ ++ ++ +     E++      RR      +I +DEI+P   +R        L+   +G    +N+ +      +  R  + +D IRR VR LS ET+MTQRRVFQVLR+  GD    +  L RER++ E+ +R R SK
Sbjct:    5 TVSHPGNPGSHIISLIDPLSRPSPRGYALHSIEYVQSCIDAGKLLELEDFRVSPRNGIVPSRKAASLRWPSSRQQRINQAMSASHQRGYAKQNGHEKYEEAGTERLEDSDENGNGRHSRKRQRKAHHIER-SRKKSRVAVKQDQYHSKPKSFENDHDAIEPIANA------DDVNGPIDESA---QKVKHKIKRERNE---LETACPKHAGHRWTMVEDNTIIRLCAKVRRKFSKTGVSATKLSPIEAWEDLEKQGLLPENRGADECRERAEKLQSTRSQELENRHTVEQKANNYVVRRPLTSPSDIDEDEIEPYYGKREGKSHPPHLEQRAKGPPPKQNQKRGTLGRQIEKRADKAKDFIRRNVRLLSSETKMTQRRVFQVLRSTFGDVAEAREALLRERQEMEQGKRRRHSK 405

The following BLAST results are available for this feature:

BLAST of Gvermi919.t1 vs. uniprot

BLAST of Gvermi919.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J3S2_9FLOR	8.110e-25	28.99	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 409..427
None	No IPR available	COILS	Coil	Coil	coord: 241..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..202
IPR001357	BRCT domain	PFAM	PF16589	BRCT_2	coord: 24..107 e-value: 1.2E-8 score: 35.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 228..292 score: 6.318553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:1230353..1231636 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi919.t1	Gvermi919.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_2952 1230353..1231636 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi919.t1 ID=Gvermi919.t1|Name=Gvermi919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MPELKGSVKTSTDPPPLFSRFVSFGKHQIRRPLYFYVGLNKHGRAPIEHL
IRQNGGVTVSEAHSALHRVISLIDPLSKPSPHGPQAYSVDFVTKCIMAGK
LLDIDSFRIPHCNDPPRNAQRSRSPSLKSTPVKQANGTQSPRTPNRSKSQ
SRPSAEDKKNDARQDSHHKPPSSEPCNPPQLLPTSDSGEPQERDEIKPVV
DTRAAIERAVKHSERRDRGSSIVLEEISPPADTEQWTPDEDQKLRQICDA
LQTKLEEQQKDLNHMFLLNTWKALGNSNVLPPDRTIEECRERALYLRISK
KEQDKPAVDKERRQTKPARRRSEEIQDDEIQPDRKERRATKVRRVLKLDR
EGAAKTRNKAKVNTRQPQREDLIRRLVRSLSYETQMTQRRVFQVLRANSG
DPETTKAVLERERRQSEKARRLRRSKT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001357	BRCT_dom
IPR001005	SANT/Myb