Gvermi9064.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi9064.t1
Unique NameGvermi9064.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length311
Homology
BLAST of Gvermi9064.t1 vs. uniprot
Match: A0A2V3IS40_9FLOR (Pre-mRNA-splicing factor 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS40_9FLOR)

HSP 1 Score: 222 bits (566), Expect = 1.340e-67
Identity = 136/319 (42.63%), Postives = 198/319 (62.07%), Query Frame = 0
Query:    1 MDPISGLRQEIEKKRKATSEKKEKWAYKSEHDGNAIPEKDLAYDESEKLAKRRKVNAHDLKIS-----VGDRDCNAAQDEKVDRNSPCKADELE---LPQESVKFDARPASHTTASH---VRGDSDANVEKSEVRTQRTSEPHLTHTASEISDGTDNPKSKSTREDRENMHKQNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            MDP++ L++ IE+K+     K +KW  + E +           +ESE++ K+R+    + + +     +G         E +  N+P   DE     +P+   K +     H+T         D   + EK +   +  + P+ +  + E  +   +   K+ RED+        V +QI+KY+R W +E+++++ ++R+KS  R  + T  QTK WLKPL+KL+RK+KL+K+IL+AL DIF+AAE+R+Y++ANRLYLERLAIG APWPMGATMVGIHARAAREKIGEDKIAHVMNDE+ RKYIQ IKRLLTVA+R+FP
Sbjct:    1 MDPLAKLKKVIEEKKACPGNKSKKWRSRQEIE-----------EESERIYKKREAELKEKQNAKKRQKIGPPPPRRTSPEVLQENAPSDGDENRQDSIPRTDSK-NLASTDHSTGQDGETATEDVTGSAEKPQNEGEIETHPNRSPISKEDKEKQKDETIKTCREDQ--------VHEQIQKYMRWWRTEIQEMAAEDRRKSKGRQMVNTFEQTKTWLKPLEKLLRKRKLQKNILSALKDIFDAAEEREYVKANRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEKTRKYIQGIKRLLTVAQRHFP 299          
BLAST of Gvermi9064.t1 vs. uniprot
Match: R7QIS3_CHOCR (Pre-mRNA-splicing factor 18 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIS3_CHOCR)

HSP 1 Score: 194 bits (492), Expect = 1.110e-55
Identity = 95/148 (64.19%), Postives = 123/148 (83.11%), Query Frame = 0
Query:  161 KQNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            K++YV  ++RKY+ +W SE+E +S + R+ +  R+ + T  +TK+WLKPL +L+RK+KL K IL+ L  IFEAA +R+YI AN +YLE+LAIG APWPMGATMVGIHARAAREKIGEDKIAHVMND++ARKYIQ +KRLLTVA+R+FP
Sbjct:  222 KEDYVYLEMRKYMGLWASEIESISKEERRTTKGRSLVVTYEETKDWLKPLYRLLRKRKLPKKILDPLKGIFEAAAEREYIRANSIYLEQLAIGKAPWPMGATMVGIHARAAREKIGEDKIAHVMNDDRARKYIQGVKRLLTVAQRHFP 369          
BLAST of Gvermi9064.t1 vs. uniprot
Match: UPI001E1DB440 (pre-mRNA-splicing factor 18-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB440)

HSP 1 Score: 192 bits (487), Expect = 9.870e-55
Identity = 96/158 (60.76%), Postives = 127/158 (80.38%), Query Frame = 0
Query:  151 STREDRENMHKQNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            +T EDR +   ++YV  Q+R+++R+WE ++  + P++R+ +  R A  TL QTKEWLKPL K +RK++L  +IL AL +IFEA E+R+Y+ AN  Y E+LAIG APWPMGATMVGIHARAAREKIGEDKIAHVMNDE++RKYIQ IKRL+T+A+R+FP
Sbjct:  231 NTDEDRPSCP-EDYVYRQMRRWVRMWEEDVLAMPPESRRSNQGRTAAATLEQTKEWLKPLSKQLRKQRLAPNILRALVNIFEAVEEREYVRANSYYYEQLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEKSRKYIQGIKRLVTLAQRHFP 387          
BLAST of Gvermi9064.t1 vs. uniprot
Match: A0A7S1XAV3_9RHOD (Pre-mRNA-splicing factor 18 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAV3_9RHOD)

HSP 1 Score: 158 bits (400), Expect = 3.630e-42
Identity = 80/147 (54.42%), Postives = 112/147 (76.19%), Query Frame = 0
Query:  162 QNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            +++V  QIR+ +R+WE+ELE  S + ++ +  +AA+ T  QTKE+++PL+ L+ +K L  +IL  +  +F+    R+Y++AN  YL RLAIG APWPMGATMVGIHAR AREKIGE KIAH+MNDEQ RKYIQ+ KRL+T+A+R +P
Sbjct:  215 EDFVARQIRRLMRMWENELEARSAEEKRTAKGKAALATFEQTKEYVRPLETLLAQKTLNPNILKPMRKMFDFMTAREYVKANDEYL-RLAIGNAPWPMGATMVGIHARTAREKIGEGKIAHIMNDEQTRKYIQACKRLITMAQRWWP 360          
BLAST of Gvermi9064.t1 vs. uniprot
Match: M2XS56_GALSU (Pre-mRNA-splicing factor 18 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XS56_GALSU)

HSP 1 Score: 153 bits (386), Expect = 1.510e-40
Identity = 76/147 (51.70%), Postives = 111/147 (75.51%), Query Frame = 0
Query:  162 QNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            + Y    +R+ +++W++E+E+L  + ++ S+ R  + T  QTKE+LKPL + ++K++L KSIL +L  I    E+R+Y+ AN  YL RLAIG APWP+GATMVGIHAR AREKI E KIAHVMNDE+ RKYIQ++KRL+T++++ +P
Sbjct:  171 EEYCFRYMRRLLKMWKAEVEQLDEETKRTSLGRKTLATFEQTKEYLKPLFRKLKKQQLDKSILTSLEKILRYVEQREYVLANDEYL-RLAIGNAPWPVGATMVGIHARTAREKISEGKIAHVMNDEETRKYIQAVKRLITLSQKWYP 316          
BLAST of Gvermi9064.t1 vs. uniprot
Match: A0A7S2ZAH2_9RHOD (Pre-mRNA-splicing factor 18 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAH2_9RHOD)

HSP 1 Score: 152 bits (385), Expect = 3.770e-40
Identity = 76/143 (53.15%), Postives = 108/143 (75.52%), Query Frame = 0
Query:  162 QNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAE 304
            ++YV  QI K +  W+  L+    D ++    R A+ T  Q+KE+L+PL+K +++++L  ++L+AL  IF+  E+R+Y++AN +YL +LAIG APWPMGATMVGIHAR AREKIGE KIAHVMNDEQ RKYIQ++KRL+T+ +
Sbjct:  196 EDYVRGQINKLMAKWKEVLDNKPADEKRTQKGRKALATYEQSKEYLEPLEKKLKRRELGLNVLHALKQIFQFVEEREYVQANDVYL-KLAIGNAPWPMGATMVGIHARTAREKIGEGKIAHVMNDEQTRKYIQAVKRLITMTQ 337          
BLAST of Gvermi9064.t1 vs. uniprot
Match: A0A5J4YGM4_PORPP (Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YGM4_PORPP)

HSP 1 Score: 136 bits (343), Expect = 5.900e-34
Identity = 72/156 (46.15%), Postives = 109/156 (69.87%), Query Frame = 0
Query:  159 MHKQNYVVDQIRKYIRVWESELEK------LSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            M+++ +V+  + K + +W +++         S  ++     R A  TL QT+E+L+P  K +  +KL +S+L  L  IFE  ++R+Y++AN +YL RLAIG APWP+GAT VGIH+RAAREKIGE+ +AHVMNDEQ RK++Q++KRL+T A++ FP
Sbjct:  194 MNRETFVLAWMHKLLSLWVADIRDHAAPTATSAPSKVSYKERQAHDTLVQTREYLEPFIKRLEARKLAESMLEFLFRIFEQVQQREYVQANDVYL-RLAIGNAPWPVGATQVGIHSRAAREKIGEENVAHVMNDEQTRKFVQAVKRLITRAQKYFP 348          
BLAST of Gvermi9064.t1 vs. uniprot
Match: A0A5J4YHG1_PORPP (Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHG1_PORPP)

HSP 1 Score: 136 bits (343), Expect = 3.620e-32
Identity = 72/156 (46.15%), Postives = 109/156 (69.87%), Query Frame = 0
Query:  159 MHKQNYVVDQIRKYIRVWESELEK------LSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            M+++ +V+  + K + +W +++         S  ++     R A  TL QT+E+L+P  K +  +KL +S+L  L  IFE  ++R+Y++AN +YL RLAIG APWP+GAT VGIH+RAAREKIGE+ +AHVMNDEQ RK++Q++KRL+T A++ FP
Sbjct: 1116 MNRETFVLAWMHKLLSLWVADIRDHAAPTATSAPSKVSYKERQAHDTLVQTREYLEPFIKRLEARKLAESMLEFLFRIFEQVQQREYVQANDVYL-RLAIGNAPWPVGATQVGIHSRAAREKIGEENVAHVMNDEQTRKFVQAVKRLITRAQKYFP 1270          
BLAST of Gvermi9064.t1 vs. uniprot
Match: A0A6A5AZ96_NAEFO (Pre-mRNA-splicing factor 18 n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5AZ96_NAEFO)

HSP 1 Score: 132 bits (331), Expect = 4.420e-32
Identity = 68/161 (42.24%), Postives = 105/161 (65.22%), Query Frame = 0
Query:  148 KSKSTREDRENMHKQNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTLHQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            K K     +E+     +V+  +++ ++ W+  L++L    +K S  +       QTK ++KPL KL++KK+L   IL  L  I      R+Y++AN +Y+E LAIG  PWP+G TMVGIHAR ARE+IG DKI H++NDE+ R+Y+QS+KRLL++A++ +P
Sbjct:  207 KYKGVHHKKESEDSYEFVLRVLKRLMKEWQYSLDELPEHVKKSSQGKRDATIFKQTKTYIKPLFKLLKKKQLSDEILKFLEPICTYMADREYVKANDVYME-LAIGDQPWPIGVTMVGIHARTARERIGSDKIKHILNDEEQRRYVQSVKRLLSLAQKLYP 366          
BLAST of Gvermi9064.t1 vs. uniprot
Match: D2V2Q2_NAEGR (Pre-mRNA-splicing factor 18 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V2Q2_NAEGR)

HSP 1 Score: 124 bits (311), Expect = 1.400e-31
Identity = 64/137 (46.72%), Postives = 99/137 (72.26%), Query Frame = 0
Query:  173 IRVWESELEKLSPDNRKKSVHRAAIRTLH-QTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERLAIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLLTVAERNFP 308
            ++ W  +L+ L P++ KKS       T++ QTK ++KPL KL++K++L   I+ +L  I     +++Y++AN +Y+E LAIG  PWP+G TMVGIHAR ARE+IG DKI H++NDE  R+Y+QS+KRL+T+A++ +P
Sbjct:    1 MKEWRYKLDDL-PEHVKKSAKGKHDATIYKQTKSYIKPLFKLLKKRQLADEIVQSLEPICSFMAEKEYVKANDVYME-LAIGNQPWPIGVTMVGIHARTARERIGSDKIKHILNDEDQRRYVQSVKRLMTLAQQLYP 135          
The following BLAST results are available for this feature:
BLAST of Gvermi9064.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IS40_9FLOR1.340e-6742.63Pre-mRNA-splicing factor 18 n=1 Tax=Gracilariopsis... [more]
R7QIS3_CHOCR1.110e-5564.19Pre-mRNA-splicing factor 18 n=1 Tax=Chondrus crisp... [more]
UPI001E1DB4409.870e-5560.76pre-mRNA-splicing factor 18-like n=1 Tax=Mercenari... [more]
A0A7S1XAV3_9RHOD3.630e-4254.42Pre-mRNA-splicing factor 18 n=1 Tax=Compsopogon ca... [more]
M2XS56_GALSU1.510e-4051.70Pre-mRNA-splicing factor 18 n=1 Tax=Galdieria sulp... [more]
A0A7S2ZAH2_9RHOD3.770e-4053.15Pre-mRNA-splicing factor 18 n=1 Tax=Rhodosorus mar... [more]
A0A5J4YGM4_PORPP5.900e-3446.15Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium p... [more]
A0A5J4YHG1_PORPP3.620e-3246.15Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium p... [more]
A0A6A5AZ96_NAEFO4.420e-3242.24Pre-mRNA-splicing factor 18 n=2 Tax=Naegleria TaxI... [more]
D2V2Q2_NAEGR1.400e-3146.72Pre-mRNA-splicing factor 18 n=1 Tax=Naegleria grub... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availableGENE3D1.20.940.10Functional domain of the splicing factor Prp18coord: 133..309
e-value: 4.1E-48
score: 165.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..145
NoneNo IPR availablePANTHERPTHR13007:SF19PRE-MRNA-SPLICING FACTOR 18coord: 113..308
NoneNo IPR availableSUPERFAMILY47938Functional domain of the splicing factor Prp18coord: 155..308
IPR004098Prp18PFAMPF02840Prp18coord: 169..308
e-value: 1.2E-46
score: 158.4
IPR039979Pre-mRNA-splicing factor 18PANTHERPTHR13007PRE-MRNA SPLICING FACTOR-RELATEDcoord: 113..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:1537977..1538909 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi9064.t1Gvermi9064.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 1537977..1538909 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi9064.t1 ID=Gvermi9064.t1|Name=Gvermi9064.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=311bp
MDPISGLRQEIEKKRKATSEKKEKWAYKSEHDGNAIPEKDLAYDESEKLA
KRRKVNAHDLKISVGDRDCNAAQDEKVDRNSPCKADELELPQESVKFDAR
PASHTTASHVRGDSDANVEKSEVRTQRTSEPHLTHTASEISDGTDNPKSK
STREDRENMHKQNYVVDQIRKYIRVWESELEKLSPDNRKKSVHRAAIRTL
HQTKEWLKPLQKLVRKKKLKKSILNALADIFEAAEKRDYIEANRLYLERL
AIGTAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQARKYIQSIKRLL
TVAERNFPKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
IPR039979PRPF18