Gvermi8904.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8904.t1
Unique NameGvermi8904.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length294
Homology
BLAST of Gvermi8904.t1 vs. uniprot
Match: A0A2V3J2E9_9FLOR (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2E9_9FLOR)

HSP 1 Score: 323 bits (828), Expect = 1.180e-107
Identity = 162/286 (56.64%), Postives = 211/286 (73.78%), Query Frame = 0
Query:    9 LLAAAFALASAHSMYFEKATFKVSFLRGGEKVQRVRLSADRDALTRVAS-PHLQIAPDDSLACQVSFLDDQQRPAAPTQVFLRFENKNNDKDNFYLLTKKGRDFKVDVKLAKQIKADLQFWQKDSSYRVQLIMGDVNLHPCETWTIIDHMTFSEQASDLFKEPERGVFDFDVSVKKTLLPEFDSPVPAPQKRAHPVVVICGLIGVILPFIVLLYAWAQMGVFPLSFKGKHNLGVLIGFEACVFAYIVALVMFWVKWNIIVTWKVMAVLMVPTYILGRQLLLENTNK 293
            LL  +F   S  ++ FEKA FKVS+++ GEK+ R R + DR ++ + A+   +QI P DS++CQ +FLDD Q PAA TQ FLRFEN+ +  DN YLL K+GRD KVDV LA++IKADLQFW+ + +Y VQLIMG + L    TW+I D+M F E ++D FKEP RGVFDFDVSVKK+LLPEF SP+  P+KRAH +++I  L GV+LP  VLL+ W +MGVFPL  K      +++GFE CV A+I AL MFW+KWNI+ TWKVMAVLM+PTY+LGR+LL E+ +K
Sbjct:    9 LLLLSFVFTSVCAIRFEKAAFKVSYVQVGEKIHRYRAATDRQSINQPATYDQVQIQPTDSISCQATFLDDDQEPAATTQAFLRFENRQSGADNIYLLRKRGRDMKVDVNLAREIKADLQFWRHNDTYLVQLIMGGLELDSSTTWSITDNMRFKEASTDAFKEPARGVFDFDVSVKKSLLPEFISPITPPEKRAHHLLIIAALAGVLLPIPVLLFGWWKMGVFPLRLKSDDKGMLVVGFELCVLAHIAALAMFWLKWNIVTTWKVMAVLMIPTYLLGRKLLSESDDK 294          
BLAST of Gvermi8904.t1 vs. uniprot
Match: A0A7S1ERM2_9RHOD (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERM2_9RHOD)

HSP 1 Score: 105 bits (263), Expect = 7.550e-23
Identity = 75/244 (30.74%), Postives = 117/244 (47.95%), Query Frame = 0
Query:   57 SPHLQIAPDDSLACQVSFLDDQQRPAAPTQVFLRFENKNNDKDNFYLLTKKGRDFKVDVKLAKQIKADLQ---FWQKDSSYRVQLIMGD--VNLHPCETWTIIDHMTFSEQASDLFKEPERGVFDFDVSVKKTLLPEFDSPVPAPQKRAHPVVVICGLIGVILPFIVLLYAWAQMGVFPLSF--KGKHNLGVLIGFEACVFAYIVALVMFWVKWNIIVTWKVMAVLMVPTYILGRQLLLENTNK 293
            S   Q+    SL   +    D+  P  P QVF+R  +    +   Y+  +      V +    + K + Q   FW+ +  Y + +I+GD  +       W +++ +    +          GVFDFD+S K+TLLPEF    P+ +KRA   +VI   I V LP +  +   ++M VFPL+    G   L V  GF  CV  YI+ L +FW+ W I+ TWK M +L  PT   G ++L + T++
Sbjct:   81 SDEFQVGQKASLEVSMELTKDKV-PFYPHQVFVRVRDLETKESLVYIGQRSKDKVVVKINFKDESKLNSQEDSFWKHNGDYSMSVILGDKAMGSDGIIKWELLNQLKLVIRGGKRTASSTPGVFDFDLSAKRTLLPEFLWEKPSAEKRAPIAIVIVFCILVTLPSVGFIVVMSRMSVFPLTIPASGSSRLAVF-GFFGCVALYILVLTLFWLGWTILSTWKYMLLLAPPTIYAGHRVLSDFTSR 322          
BLAST of Gvermi8904.t1 vs. uniprot
Match: A0A7S2ZKG0_9RHOD (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZKG0_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 5.250e-17
Identity = 50/177 (28.25%), Postives = 92/177 (51.98%), Query Frame = 0
Query:   57 SPHLQIAPDDSLACQVSFLDDQ-QRPAAPTQVFLRFENKNNDKDNFYLLTKKGRDFKVDVKLAKQIKADLQFWQKDSSYRVQLIMGDVNLHPCETWTIIDHMTFSEQASDLFKEPERGVFDFDVSVKKTLLPEF--DSPVPAPQKRAHPVVVICGLIGVILPFIVLLYAWAQMGVFP 230
            SP + ++ D++++  + F D +   PA P QVF+RF + ++ +   ++  K G  F   ++  K    + + W+  +S+ + +++GDV++     WT+ + + F          P + VFDFD+SVKK++ PEF  D     P      V + C L  V+ PF+ L+  W+ +G  P
Sbjct:   67 SPQIILSEDNTMSVSMEFFDSKADSPAFPKQVFIRFRDNDSGEFADFIAKKSGSSFLASLRFLKLSDEEPKLWRDLASFSMSILVGDVSMDGVNVWTVCEDVLFMYNRPK--SPPLKSVFDFDISVKKSMQPEFAVDRSSILPTAPVPIVFLFCVL--VVTPFLGLISVWSVLGALP 239          
BLAST of Gvermi8904.t1 vs. uniprot
Match: A0A7S1XAV6_9RHOD (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAV6_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 1.120e-16
Identity = 70/226 (30.97%), Postives = 107/226 (47.35%), Query Frame = 0
Query:   75 LDDQQRPAAPTQVFLRFENKNNDK---------DNFYL--LTKKGRDFKVDVKLAKQIKADLQFWQKDSSYRVQLIMGDVNLHPCET--WTIIDHMTFSEQASDLFKEPERGVFDFDVSVKKTLLPEFDSPVPAPQKRAHPVVVICGLIGVILPFIVLLYAWAQMGVFPLSFKGKHNLGVLIGFEACVFAYIVALVMFWVKWNIIVTWKVMAVLMVPTYILGRQLL 287
            L D + P  P Q+F+RF    NDK         +  YL  L   G   +V  +L    K DL FW     Y+++L++GD  +       WT+ + + F        K  +  VFDFDVS+KK+L PEF       ++RA  +  +      + P + L+  W+++G FPL           +GF+ C+    + LV FW+ W II T K + +L +PT + G Q L
Sbjct:   52 LTDVESPP-PRQMFVRFTK--NDKLIRYPQGKREVVYLGNLKGSGPSSRVSFELTVHPK-DLDFWDSKGKYQMELVVGDPRMKSPRVMVWTLCNEVIFDYINVPASKR-KPPVFDFDVSIKKSLQPEFIFEPSPVERRAPRLFSLLWAALTLAPLLALIRMWSRLGAFPLDLPTSSL--PFLGFQFCLVLNALLLVSFWLGWTIIATTKYLLILAIPTILFGHQAL 270          
BLAST of Gvermi8904.t1 vs. uniprot
Match: A0A5J4YHR6_PORPP (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHR6_PORPP)

HSP 1 Score: 81.6 bits (200), Expect = 3.850e-14
Identity = 69/220 (31.36%), Postives = 101/220 (45.91%), Query Frame = 0
Query:   83 APTQVFLRFENKNNDKDNFYLLTKKGRDFKVD--VKLAKQIK-----ADLQFWQKDSSYRVQLIMGDVNLHPCETWTIIDHMTFSEQASDLFKEPER----GVFDFDVSVKKTLLPEFDSPVPAPQKRAHPVVVICGLIGVILPFIVLLYAWAQ-MGVFPLSF-KGKHNLGVLIGFEACVFAYIVALVMFWVKWNIIVTWKVMAVLMVPTYILGRQLLLE 289
            AP Q FLR  + N       L  +  +  K+   V   KQ       A   +W+    Y  +L++GD +     T   I +   S    D  K P       VFD  +SVKK   PEF   +PAP+      ++    +  +LP +  + A A  +G FPL+  K    L     F AC+      L MFW++WNI+ TWKV+AV ++PT I G+++L E
Sbjct:   93 APQQAFLRVSDLNQSDHLVVLPARSEKKTKLSFAVSPGKQPTTSSGGAAAPYWKHQHVYSFELLLGDTS-----TENAIVYQVISALRVDFRKPPPXLXXXXVFDXXMSVKKEPQPEFRWELPAPRSSPPMAIIAVFTVLAVLPMLGFVGASASVLGCFPLAIPKSGPALAAFAVFFACLTVIAGILFMFWLRWNILTTWKVLAVALIPTVISGQKVLYE 307          
The following BLAST results are available for this feature:
BLAST of Gvermi8904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J2E9_9FLOR1.180e-10756.64Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S1ERM2_9RHOD7.550e-2330.74Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S2ZKG0_9RHOD5.250e-1728.25Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S1XAV6_9RHOD1.120e-1630.97Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A5J4YHR6_PORPP3.850e-1431.36Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008814Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1PFAMPF05817Ribophorin_IIcoord: 66..288
e-value: 1.8E-25
score: 89.6
IPR008814Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1PANTHERPTHR12640RIBOPHORIN IIcoord: 66..290
NoneNo IPR availablePANTHERPTHR12640:SF0DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2coord: 66..290
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 203..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 266..283
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 224..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 284..293
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 261..265
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..202
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..260
NoneNo IPR availableTMHMMTMhelixcoord: 266..288
NoneNo IPR availableTMHMMTMhelixcoord: 202..224
NoneNo IPR availableTMHMMTMhelixcoord: 239..261
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:476107..476988 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8904.t1Gvermi8904.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 476107..476988 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8904.t1 ID=Gvermi8904.t1|Name=Gvermi8904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=294bp
MLFSPLIALLAAAFALASAHSMYFEKATFKVSFLRGGEKVQRVRLSADRD
ALTRVASPHLQIAPDDSLACQVSFLDDQQRPAAPTQVFLRFENKNNDKDN
FYLLTKKGRDFKVDVKLAKQIKADLQFWQKDSSYRVQLIMGDVNLHPCET
WTIIDHMTFSEQASDLFKEPERGVFDFDVSVKKTLLPEFDSPVPAPQKRA
HPVVVICGLIGVILPFIVLLYAWAQMGVFPLSFKGKHNLGVLIGFEACVF
AYIVALVMFWVKWNIIVTWKVMAVLMVPTYILGRQLLLENTNK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008814Swp1