Gvermi8817.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8817.t1
Unique NameGvermi8817.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length104
Homology
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A2V3IJU4_9FLOR (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJU4_9FLOR)

HSP 1 Score: 195 bits (496), Expect = 1.720e-62
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 0
Query:    1 MHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC 103
            M EPTGPFTLL DMLLG+FVPHGACKTMIDKLPLE+VGE Q DIE   V PV RGDKCAICLGPYE GE+VRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC
Sbjct:   48 MREPTGPFTLLFDMLLGIFVPHGACKTMIDKLPLEIVGEEQDDIE-SVVIPVKRGDKCAICLGPYEQGESVRHLTCNHAFHAECVDIWLEKRSLCPICKTHAC 149          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A2V3IFI0_9FLOR (RING finger protein 44 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI0_9FLOR)

HSP 1 Score: 109 bits (272), Expect = 2.000e-28
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0
Query:    2 HEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICKTHA 102
            +EPT   ++LLDMLL  FV HG  +++I+ LP E V    +  +    + +S   KCAICL PY+  E VR L CNH FHA+CVD+WL KR+ CPICK HA
Sbjct:   48 NEPTDIPSILLDMLLSNFVQHGLSQSLINALPTETVCSPSNPHQSPSDSHLSSPHKCAICLAPYQPRETVRRLPCNHPFHAQCVDLWLNKRNSCPICKAHA 148          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A4S8K592_MUSBA (RING-type E3 ubiquitin transferase n=3 Tax=Musaceae TaxID=4637 RepID=A0A4S8K592_MUSBA)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-13
Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = 0
Query:   20 VPH--GACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLT-CNHAFHAECVDIWLEKRSLCPICKTHA 102
            +PH  G  +  ID LP        H ++C    P +    CA+CL P   GE VR L  C HAFH EC+D+WL   SLCP+C+  A
Sbjct:   61 LPHDAGLSQLAIDALPAFA-----HHVDCKDTCPTTH---CAVCLNPVMEGEMVRLLPGCRHAFHVECIDMWLHSHSLCPLCRAEA 138          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A0D2MUW8_9CHLO (E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUW8_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   51 PVS-RGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICK 99
            PVS   D+C ICLG YE GE ++ L C H++H+EC+D WLEK ++CP+CK
Sbjct:  197 PVSVDADECTICLGSYEDGEVLKQLPCGHSYHSECIDAWLEKSAVCPLCK 246          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A8B7C122_PHODC (uncharacterized protein LOC103706984 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7C122_PHODC)

HSP 1 Score: 72.0 bits (175), Expect = 1.570e-12
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 0
Query:   23 GACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICK 99
            GA ++ ID LP  V+   Q D         S  + CAICL     G+ +RHL C H FH EC+D WL++R+LCPICK
Sbjct:  771 GASESQIDSLPQSVI---QSD---------SIKEACAICLEVPSTGDVIRHLPCLHKFHKECIDTWLKRRTLCPICK 835          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A835PV35_VANPL (RING-type domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PV35_VANPL)

HSP 1 Score: 71.6 bits (174), Expect = 2.130e-12
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0
Query:   23 GACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICK 99
            GA  T I+ LPL V+  A  +            + CA+CL     G+ +RHL C H FH EC+D WL ++ +CPICK
Sbjct:  672 GATDTQINSLPLSVIQNAASE------------EACAVCLETPSLGDTIRHLPCLHKFHKECIDTWLRRKKMCPICK 736          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A5A7QVP6_STRAF (RING/U-box superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QVP6_STRAF)

HSP 1 Score: 68.9 bits (167), Expect = 2.260e-12
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 0
Query:   26 KTMIDKLPLEVVGEAQHDIECGRVTPVSRGD---KCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSL-CPICK 99
             T  +++ LE++G+  H+       P    D   +C++CL  +E G+ VR+L CNH FH +C+D WL++ S  CP+C+
Sbjct:   45 STPTEQIFLEIIGQKSHEYIYKTEPPFELHDHHEECSVCLSLFEQGDEVRNLKCNHTFHKDCIDTWLQRESATCPLCR 122          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A328E9A5_9ASTE (RING-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E9A5_9ASTE)

HSP 1 Score: 71.2 bits (173), Expect = 2.910e-12
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0
Query:   23 GACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICKT 100
            GA    I+ LPL VV    H+            + CAICL     G+ +RHL C H FH +C+D WL++R+LCP+CK+
Sbjct:  697 GASMNRINGLPLSVVQIENHE------------EACAICLETPTMGDTIRHLPCLHKFHKDCIDPWLQRRTLCPVCKS 762          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A0G4F7C9_9ALVE (RING-type domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F7C9_9ALVE)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-12
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 0
Query:   21 PHGACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICKTHA 102
            P G   + I++LP + + E   +    R+     G +C ICL  +E GE +R L C HAFH+ C+D WL++  +CP+CK  A
Sbjct:  661 PRGMEASDINRLPTQTLDEESVE----RLARSDAGPECRICLDKFEGGENIRRLPCAHAFHSRCIDRWLQRSLVCPVCKHDA 738          
BLAST of Gvermi8817.t1 vs. uniprot
Match: A0A6I9SAX1_ELAGV (uncharacterized protein LOC105059137 isoform X1 n=2 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9SAX1_ELAGV)

HSP 1 Score: 70.5 bits (171), Expect = 5.480e-12
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 0
Query:   23 GACKTMIDKLPLEVVGEAQHDIECGRVTPVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICK 99
            GA ++ ID LP   +   Q D         S  + CAICL     G+ +RHL C H FH EC+D WL +R+LCPICK
Sbjct:  845 GASESQIDSLPQSAI---QSD---------SIEEACAICLEAPSAGDVIRHLPCLHKFHKECIDTWLRRRTLCPICK 909          
The following BLAST results are available for this feature:
BLAST of Gvermi8817.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJU4_9FLOR1.720e-6287.38E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
A0A2V3IFI0_9FLOR2.000e-2850.50RING finger protein 44 n=1 Tax=Gracilariopsis chor... [more]
A0A4S8K592_MUSBA1.100e-1341.86RING-type E3 ubiquitin transferase n=3 Tax=Musacea... [more]
A0A0D2MUW8_9CHLO1.310e-1356.00E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium ... [more]
A0A8B7C122_PHODC1.570e-1245.45uncharacterized protein LOC103706984 n=1 Tax=Phoen... [more]
A0A835PV35_VANPL2.130e-1240.26RING-type domain-containing protein n=1 Tax=Vanill... [more]
A0A5A7QVP6_STRAF2.260e-1235.90RING/U-box superfamily protein n=1 Tax=Striga asia... [more]
A0A328E9A5_9ASTE2.910e-1241.03RING-type domain-containing protein n=3 Tax=Cuscut... [more]
A0A0G4F7C9_9ALVE3.960e-1237.80RING-type domain-containing protein (Fragment) n=1... [more]
A0A6I9SAX1_ELAGV5.480e-1244.16uncharacterized protein LOC105059137 isoform X1 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 58..98
e-value: 8.2E-7
score: 38.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 56..99
e-value: 5.3E-13
score: 49.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 58..99
score: 11.972923
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 20..102
e-value: 6.7E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 21..100
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 57..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:178662..179077 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8817.t1Gvermi8817.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 178662..179077 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8817.t1 ID=Gvermi8817.t1|Name=Gvermi8817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=104bp
MHEPTGPFTLLLDMLLGLFVPHGACKTMIDKLPLEVVGEAQHDIECGRVT
PVSRGDKCAICLGPYEHGEAVRHLTCNHAFHAECVDIWLEKRSLCPICKT
HAC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD