Gvermi8816.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8816.t1
Unique NameGvermi8816.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length260
Homology
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A2V3ITP2_9FLOR (Vacuolar protein sorting-associated protein 28-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITP2_9FLOR)

HSP 1 Score: 387 bits (994), Expect = 1.040e-133
Identity = 203/277 (73.29%), Postives = 228/277 (82.31%), Query Frame = 0
Query:    1 MAAR-PSNSYWQSQAPPAANHHPPAAHKP-----------------PSFDMEIPRPPPLAVPQAPLFSTKPPSGIPVKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLKAGVPATVAVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEFERAYND 259
            MA R P ++ W++Q PPA +   P+   P                 P   + IP PPPL  P   LFS +PPSG PVKLF DK+DKEMYEDMSAVFSLLTATERLENIWARRGAI+Q++YEQQCEKLIQQFRVLRTSTEKSIPN+D+FIAE++CKASKARPRLKAGVPATVA+V++TPKDLGKFVMRCT+LFHYC SCI+MNQRAVNVLLPDLTSLMKTLARVPALGSNFEF  KIR WVEKLNAM AN++L+EQ+AAQLKLDLD GYAEFE AYND
Sbjct:    1 MATRVPPSNVWEAQVPPAVSLPQPSHPHPXXXXXXXXHAQPLQPLYPQQVLHIPGPPPLQTPHMSLFSARPPSGTPVKLFADKSDKEMYEDMSAVFSLLTATERLENIWARRGAIAQHDYEQQCEKLIQQFRVLRTSTEKSIPNLDKFIAEYDCKASKARPRLKAGVPATVAIVTSTPKDLGKFVMRCTSLFHYCISCIEMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFAAKIRTWVEKLNAMPANDDLTEQDAAQLKLDLDTGYAEFESAYND 277          
BLAST of Gvermi8816.t1 vs. uniprot
Match: R7QHR5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHR5_CHOCR)

HSP 1 Score: 240 bits (613), Expect = 2.250e-76
Identity = 129/216 (59.72%), Postives = 159/216 (73.61%), Query Frame = 0
Query:   48 LFSTKPPSGIPVKLFNDKTDKEM----YEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLKAGVPATVAVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEFERAYND 259
            +FS+ PP G PV+L+ DK D+E     YEDMSAVFS++TATERLENIWAR GAISQ++YE+QCE LIQQ++VL  ST + IP ID+FI E++ KASKARPRL  G P TV      PK   KFV RCT+LFH+  +CID NQ AV  LLPDL SLMKTL  + +L  +F F  ++  WVEKLNAM A+ EL+  +A+QLKLDLDNGYAE E A ++
Sbjct:   26 VFSSAPPRGEPVRLYRDKRDEERNTDKYEDMSAVFSVITATERLENIWARWGAISQDDYERQCELLIQQYKVLTASTAEFIPKIDKFIHEYDIKASKARPRLACGYPVTVKGPKE-PKHQNKFVFRCTSLFHHLGTCIDTNQVAVGFLLPDLISLMKTLKSISSLPQDFVFNARVEFWVEKLNAMPASFELTFDDASQLKLDLDNGYAELEAAISN 240          
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A0D6QW48_ARACU (Vacuolar protein sorting-associated protein 28 homolog n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QW48_ARACU)

HSP 1 Score: 127 bits (318), Expect = 2.390e-32
Identity = 73/198 (36.87%), Postives = 122/198 (61.62%), Query Frame = 0
Query:   59 VKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLK-AGVPATVAVVSNTPKDLGKFVMRCTTLFHYCSSC--IDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            VKL+NDK ++EMY++ + +F+++   E+LE  + R   IS  +YE +C KLI QF+ L TS + ++P++DRF+  ++     A  RL  +G+PATV   + +  D+G  V     + H+ ++   + +N  AV+ + P L+ L+  L +VP L S+FE   K+R W+ +LN M+A +EL++Q+A QL  DL+  Y  F
Sbjct:    9 VKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVR-DVISPKDYEPECTKLIAQFKTLTTSLKDTVPSVDRFMETYKMDCPAAVNRLLVSGIPATVEHKAQS-SDMGTAVAVAECVQHFITAMDSLKLNMMAVDQVHPPLSDLLSALNKVPQLSSDFEGKVKMREWISRLNKMSAADELTDQQARQLLFDLETSYNAF 204          
BLAST of Gvermi8816.t1 vs. uniprot
Match: D5A9P7_PICSI (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A9P7_PICSI)

HSP 1 Score: 125 bits (314), Expect = 9.390e-32
Identity = 75/197 (38.07%), Postives = 115/197 (58.38%), Query Frame = 0
Query:   59 VKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLK-AGVPATVAV-VSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            VKL+NDK ++EMY++ + +F+++   E+LE  + R   IS  +YE +C KLI QF+ L TS + ++P+++RF+  ++     A  RL  +G+PATV    S++       V  C   F      + +N  AV+ L P L+ L+  L RVP L  +FE   K R W+ +L  M A+EEL+EQ+A QL  DLD+ Y  F
Sbjct:    9 VKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVR-DVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAVNRLLVSGIPATVEHRASSSDVGTAAAVAECVQHFITSMDSLKLNMLAVDQLYPALSDLLSALNRVPQLPPDFEGKVKGREWISRLRNMGASEELTEQQARQLLFDLDSSYNAF 204          
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A7N2LV99_QUELO (Vacuolar protein sorting-associated protein 28 homolog n=4 Tax=Fagaceae TaxID=3503 RepID=A0A7N2LV99_QUELO)

HSP 1 Score: 122 bits (307), Expect = 9.000e-31
Identity = 74/198 (37.37%), Postives = 121/198 (61.11%), Query Frame = 0
Query:   59 VKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLK-AGVPATVA--VVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            VKL+NDK ++EMY++ + +++++ ATE+LE  + R   IS +EYE +C+KLI  F+ L ++ + ++P+I+RF   ++     A  RL  +GVPATV     ++T  D  K V  CTT F      + +N  AV+ + P L+ L  +L +   L  +FE   K+R W+ +L+ M+A +EL+EQ+A QL  DLD+ +  F
Sbjct:    3 VKLWNDKREREMYDNFAELYAIIKATEKLEKAYVR-DIISPSEYETECQKLIAHFKTLASTLKDTVPSIERFADTYKMDCPAAINRLVISGVPATVEHRAAASTMAD-PKIVAECTTNFITAMDVLKLNMVAVDQVHPVLSELSASLTKFAVLPPDFEGKTKMREWLSRLSRMSAADELTEQQARQLLFDLDSSFNSF 198          
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A2G5EGZ5_AQUCA (Vacuolar protein sorting-associated protein 28 homolog n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5EGZ5_AQUCA)

HSP 1 Score: 122 bits (305), Expect = 2.030e-30
Identity = 73/196 (37.24%), Postives = 118/196 (60.20%), Query Frame = 0
Query:   59 VKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRL-KAGVPATV---AVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGY 250
            VKL+NDK ++EMY++ + +++++ ATE+LE  + R   IS  EYE +C KLI QF+ L +S + +IP+++RF+  ++     A  RL  +GVPATV   + VS +       V  C   F      + +N  AV+ + P L+ L+ +L ++  L  +FE   K+R W+ KL+ M A +EL++Q+A QL  DLD+ Y
Sbjct:    3 VKLWNDKREREMYDNFADLYAIVKATEKLEKAYVR-DIISSAEYEPECLKLIAQFKTLTSSLKDTIPSVERFVDTYKMDCPAAINRLITSGVPATVEHRSAVSASTNTSAAIVAECVQHFITAMDTLKLNMIAVDQVHPVLSDLLASLHKLSILPPDFEGTTKMREWIGKLSKMGAADELTDQQARQLHFDLDSSY 197          
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A4P1QRZ2_LUPAN (Vacuolar protein sorting-associated protein 28 homolog n=4 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A4P1QRZ2_LUPAN)

HSP 1 Score: 122 bits (305), Expect = 2.090e-30
Identity = 72/203 (35.47%), Postives = 121/203 (59.61%), Query Frame = 0
Query:   55 SGIPVKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLK-AGVPATV---AVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            +G+ VKL+NDK ++EMY++ + +++++ ATERLE  + R   IS  EYE +C+KLI  F+ L ++ + ++P+I+RF   ++ +   A  RL  +GVPATV   A  + T       V  C   F      + +N  AV+ + P L+ L  +L ++  L  +FE   K++ W+ +L+ M+A +EL+EQ+A QL  DL++ Y  F
Sbjct:    3 TGMEVKLWNDKREREMYDNFAELYAIIKATERLEKAYVR-DIISPQEYELECQKLIAHFKTLASTLKDTVPSIERFADTYKMECPSAINRLVISGVPATVEHRAAAAATTSTSAAIVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLHGSLNKLSILPPDFEGKTKLKEWIARLSKMSAADELTEQQARQLHFDLESSYNSF 204          
BLAST of Gvermi8816.t1 vs. uniprot
Match: VP281_ARATH (Vacuolar protein sorting-associated protein 28 homolog 1 n=27 Tax=Brassicaceae TaxID=3700 RepID=VP281_ARATH)

HSP 1 Score: 121 bits (304), Expect = 2.640e-30
Identity = 74/199 (37.19%), Postives = 117/199 (58.79%), Query Frame = 0
Query:   59 VKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRL-KAGVPATV---AVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            VKL+NDK ++EMYE+ + +++++ ATE+LE  + R   IS +EYE +C+KLI  F+ L  S +  +PNI+RF   ++   S A  RL  +GVPATV   A  S +       V  C   F      + +N  AV+ + P L+ L  +L ++  L  +FE   K++ W+ +L+ M A++EL+EQ+A QL  DL++ Y  F
Sbjct:    3 VKLWNDKREREMYENFAELYAIIKATEKLEKAYIR-DLISPSEYETECQKLIVHFKTLSASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDLESSYNSF 200          
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A3Q7F5L5_SOLLC (Uncharacterized protein n=5 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7F5L5_SOLLC)

HSP 1 Score: 122 bits (307), Expect = 5.360e-30
Identity = 78/216 (36.11%), Postives = 125/216 (57.87%), Query Frame = 0
Query:   46 APLFSTKP----PSGIPVKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRL-KAGVPATV---AVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            +P F TK     P+ + VKL+NDK ++EMYE+ + +F+++ ATE+LE  + R   IS  EYE +C+KLI  F+ L ++ + ++P+I+RF   ++     A  RL  +GVPATV   A  + +       V  C   F      + +N  AV+ + P L+ L  +L ++  L S+FE   K+R W+ +L+ M A +EL+EQ+A QL  DL++ Y  F
Sbjct:   57 SPTFLTKVKILLPTPMEVKLWNDKREREMYENFAELFAIIKATEKLEKAYVR-DIISPAEYEAECQKLIAHFKTLSSTLKDTVPSIERFHDTYKMDCPAALNRLVTSGVPATVEHRAAAATSSASSASVVAECVQNFITAMDSLKLNMIAVDQVHPLLSDLSSSLNKLLILPSDFEGKTKMREWLSRLSKMGAADELTEQQARQLHFDLESSYNSF 271          
BLAST of Gvermi8816.t1 vs. uniprot
Match: A0A0U9HKA5_KLENI (Vacuolar protein sorting-associated protein 28 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKA5_KLENI)

HSP 1 Score: 120 bits (300), Expect = 1.090e-29
Identity = 74/204 (36.27%), Postives = 126/204 (61.76%), Query Frame = 0
Query:   55 SGIPVKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQNEYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEF--ECKASKARPRLKAGVPATVAVVSNTPKDLGKFVMRCT-TLFHYCSSC--IDMNQRAVNVLLPDLTSLMKTLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGYAEF 253
            +G  +KL+NDK ++EMYE+ + +++++  TE+LE  + R   IS  EYE  C KLI QFR LRT+ + S+P+++RF++ +  EC A+  R  L++G+PATV      P +     M    T+ H+ ++   + ++  AV+ + P L+ L+ ++ RVP L  +FE   K + W+ +L  M+A++EL+E +A QL  DL++ Y  F
Sbjct:    2 TGTELKLWNDKAEREMYENFADLYAIIKTTEKLEKAYVR-DVISAKEYEPACLKLIAQFRTLRTTLKDSVPDVERFMSAYKLECPAAVNR-LLQSGLPATVEHGRPVPGEGPSSAMAVAETVQHFITAMDSLKLSMVAVDQVYPLLSDLVSSMNRVPQLPPDFEGKVKGKDWISRLAKMSASDELNEGQARQLLFDLESSYTAF 203          
The following BLAST results are available for this feature:
BLAST of Gvermi8816.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITP2_9FLOR1.040e-13373.29Vacuolar protein sorting-associated protein 28-lik... [more]
R7QHR5_CHOCR2.250e-7659.72Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0D6QW48_ARACU2.390e-3236.87Vacuolar protein sorting-associated protein 28 hom... [more]
D5A9P7_PICSI9.390e-3238.07Vacuolar protein sorting-associated protein 28 hom... [more]
A0A7N2LV99_QUELO9.000e-3137.37Vacuolar protein sorting-associated protein 28 hom... [more]
A0A2G5EGZ5_AQUCA2.030e-3037.24Vacuolar protein sorting-associated protein 28 hom... [more]
A0A4P1QRZ2_LUPAN2.090e-3035.47Vacuolar protein sorting-associated protein 28 hom... [more]
VP281_ARATH2.640e-3037.19Vacuolar protein sorting-associated protein 28 hom... [more]
A0A3Q7F5L5_SOLLC5.360e-3036.11Uncharacterized protein n=5 Tax=Solanum subgen. Ly... [more]
A0A0U9HKA5_KLENI1.090e-2936.27Vacuolar protein sorting-associated protein 28 hom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038358VPS28, N-terminal domain superfamilyGENE3D1.20.1440.200coord: 59..153
e-value: 1.4E-21
score: 78.7
IPR037206VPS28, C-terminal domain superfamilyGENE3D1.20.120.1130coord: 160..257
e-value: 3.9E-22
score: 80.1
IPR037206VPS28, C-terminal domain superfamilySUPERFAMILY140427VPS28 C-terminal domain-likecoord: 164..255
IPR007143Vacuolar protein sorting-associated Vps28PFAMPF03997VPS28coord: 74..255
e-value: 3.2E-39
score: 134.6
IPR007143Vacuolar protein sorting-associated Vps28PANTHERPTHR12937VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28coord: 59..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
IPR017898Vacuolar protein sorting-associated, VPS28, N-terminalPROSITEPS51313VPS28_Ncoord: 48..155
score: 8.56016
IPR017899Vacuolar protein sorting-associated, VPS28, C-terminalPROSITEPS51310VPS28_Ccoord: 162..258
score: 20.120386
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 59..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:175957..176736 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8816.t1Gvermi8816.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 175957..176736 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8816.t1 ID=Gvermi8816.t1|Name=Gvermi8816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=260bp
MAARPSNSYWQSQAPPAANHHPPAAHKPPSFDMEIPRPPPLAVPQAPLFS
TKPPSGIPVKLFNDKTDKEMYEDMSAVFSLLTATERLENIWARRGAISQN
EYEQQCEKLIQQFRVLRTSTEKSIPNIDRFIAEFECKASKARPRLKAGVP
ATVAVVSNTPKDLGKFVMRCTTLFHYCSSCIDMNQRAVNVLLPDLTSLMK
TLARVPALGSNFEFGDKIRGWVEKLNAMAANEELSEQEAAQLKLDLDNGY
AEFERAYND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038358VPS28_N_sf
IPR037206VPS28_C_sf
IPR007143Vps28
IPR017898VPS28_N
IPR017899VPS28_C
IPR037202ESCRT_assembly_dom