Gvermi8803.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8803.t1
Unique NameGvermi8803.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Homology
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A2V3IM87_9FLOR (Putative cysteine desulfurase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM87_9FLOR)

HSP 1 Score: 271 bits (692), Expect = 9.870e-86
Identity = 140/306 (45.75%), Postives = 188/306 (61.44%), Query Frame = 0
Query:    1 MRALAQSYSQLLKPHDQVVLADVSEGCVRTWNALSERRRFRVVQVSDISFSAIASRVSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVDKCGADFVLADCSSVGVPMAFLYGKKTRWVALPPSFGGEHSLSACCFTQEYDLGGNNWGPIPERFEVGTSCLPRIASLKAVVDEYNETSLKKSRSPSITESHGMYLYEQLQSCKKVQVYGSPERRALFACFNVEGVDSFRVAAELGESRVYVNAGLHGAPKAHAMLGINSSIRVHIDAAKHTAEHIDHFIQCLNNAVNK 306
            MR LA SY QLLK  ++V+L D+ +   + W   S    FRVV  +D+S +A+A  +S+KT+L VL+S S FGN HDL   LEFLQA  IPV+L VSD+L  G L+ +K G DF+++DC+ +G P AFLYGK  R   LPP+FGGE SL  C  T E  L   NWGPIPERF+VG  CLP IAS+  VV+ YN   + +  + ++ E+   YL+EQL+    + VYG  E RA FACFNV G DS  V  +L E  + V  G H + + H    +++S+R  +    HT + ID F++ L   V K
Sbjct:   58 MRTLASSYCQLLKREEEVILGDLGDRHSQLWKTASRNGLFRVVHATDMSLAAMAHLISSKTRLFVLRSASAFGNVHDLGDTLEFLQALEIPVILEVSDTLQYGHLQAEKRGVDFLVSDCTGIGAPAAFLYGKMHRLERLPPAFGGEQSLLQCTCTDESGLDIANWGPIPERFDVGMPCLPTIASIGTVVERYNAI-ISRPMTRTLFENQAKYLHEQLRLSDGLCVYGDAENRAPFACFNVSGADSVIVVEKLKEHGILVRVGCHDSRQVHENNDVSASLRADVSFENHTNDDIDLFVESLRAVVGK 362          
BLAST of Gvermi8803.t1 vs. uniprot
Match: E8LEA9_9FIRM (Cysteine desulfurase n=5 Tax=Phascolarctobacterium TaxID=33024 RepID=E8LEA9_9FIRM)

HSP 1 Score: 77.8 bits (190), Expect = 1.960e-12
Identity = 78/315 (24.76%), Postives = 132/315 (41.90%), Query Frame = 0
Query:    1 MRALAQSYSQL-LKPHDQVVLADVSEGC-VRTWNALSERRRFRVVQVS-----DISFSAIASRVSAKTKLIVLQSTS-FFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVDKCGADFVLADCSSVGVPMAF--LYGKKTRWVALPPSFGGEHSLSACCFTQEYDLGGNNWGPIPERFEVGTSCLPRIASLKAVVDEYNETSLK--KSRSPSITESHGMYLYEQLQSCKKVQVYG--SPERRALFACFNVEGVDSFRVAAELGESRVYVNAGLHGAPKAHAMLGINSSIRVHIDAAKHTAEHIDHFIQCLN 301
            +  +A SY    LKP D++V   +     +  W  ++++    V  +       IS  AI + V+ KTK++ +   S   G  + +   +      G   V++ + S     + V K  ADF+      +  PM    LYGKK    A+PP   G   +S   F       G  + P+P +FE GT      A L A ++  N    +  ++R  ++T+      ++ +Q+   V + G  + E       F VEGV    +AA L    V + AG H A      L   ++ R  + A  ++A  ++ FI  L+
Sbjct:   98 LNLVAYSYGLANLKPGDEIVTTIMEHHSNMLPWRMVAQQTGAVVKYIECAVDGSISDEAIDAAVTEKTKIVAMAEVSNVLGRLNPIAKAISAAHKVGAVAVIDAAQSAPHMAIDVQKMDADFLAFSGHKMLGPMGIGVLYGKKALLEAMPPFLSGGEMIS---FVSR---DGQEYAPLPHKFEAGTVNAAGAAGLHAAIEYINSIGFEVIEAREAALTK----LAFDAMQNIPGVHIIGGKTAEEHKGILTFTVEGVHPHDIAAILDADGVNIRAGNHCAQPLLDHLCTGATARASL-AFYNSAADVERFINSLS 401          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A2V8S2J7_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8S2J7_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.260e-6
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   54 ASRVSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD-KCGADFVLADCSSVGVPMAF------LYGKKTRWVALPP 141
            A+++  KT  IV+QS +FFG   DLQ++ E     G  +V+ V++S+S G+LR    CGAD V+A+  S GVP++F      L+  + R+    P
Sbjct:  197 AAQLDDKTAAIVVQSPNFFGCVEDLQALAERAHKVGALLVVVVTESMSLGLLRSPGACGADIVVAEGQSFGVPLSFGGPYVGLFATRERFARQMP 291          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A1Q7NEH3_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7NEH3_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.690e-6
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   57 VSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD-KCGADFVLADCSSVGVPMAF 128
            + A+T  +V+QS +FFG   DLQ++ E + A G  +++ +S+++S G+LR    CGAD V+A+  S GVP++F
Sbjct:  200 MDAQTAAVVVQSPNFFGCIEDLQALSEKVHANGALLIVAISEAMSLGLLRSPGSCGADIVVAEGQSFGVPVSF 272          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A2V8Q496_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8Q496_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.690e-6
Identity = 30/79 (37.97%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   51 SAIASRVSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD-KCGADFVLADCSSVGVPMAF 128
            SA+A+ +  +T  +V+QS +FFG   DL ++ E   A G  +V+ +++++S G+L+   +CGAD V+A+  S GVP++F
Sbjct:  194 SALAAAIDDQTAAVVVQSPNFFGCIEDLTALAEAAHAKGALLVVAITEAISLGLLKSPGECGADIVVAEGQSFGVPLSF 272          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A2V8PPK6_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8PPK6_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.040e-6
Identity = 31/84 (36.90%), Postives = 53/84 (63.10%), Query Frame = 0
Query:   46 SDISFSAIASRVSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD-KCGADFVLADCSSVGVPMAF 128
            S I+ +   + +  +T  +V+QS +FFG   DLQ++ E   A G  +++ ++++LS G+LR    CGAD V+A+  S GVP++F
Sbjct:  189 SGITLTESLAALDDQTAAVVVQSPNFFGCIEDLQALSEKAHANGALLIVAITEALSLGLLRSPGSCGADIVVAEGQSFGVPLSF 272          
BLAST of Gvermi8803.t1 vs. uniprot
Match: UPI0004E11DC2 (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Agathobaculum desmolans TaxID=39484 RepID=UPI0004E11DC2)

HSP 1 Score: 58.5 bits (140), Expect = 4.650e-6
Identity = 64/242 (26.45%), Postives = 103/242 (42.56%), Query Frame = 0
Query:   62 KLIVLQSTS-FFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD----KCGADFVLADCSSVGVPMA--FLYGKKTRWVALPPSFGGEHSLSACCFTQEYDLGGNNWGPIPERFEVGTSCLPRIASLKAVVDEYNETSLKKSRSPSITESHGMYLYEQ----LQSCKKVQVYGSPERRALFACFNVEGVDSFRVAAELGESRVYVNAGLHGAPKAHAMLGINSSIRVHIDAAKHTAEH 292
            +L++L   S  FG    L +I   L A G+P++L+ S S  +G++ +D     C A   +    ++  P     L     R  A P   GG  SLS      E+         +P+  E GT  +P IA L A +      +  ++  P+   +H   L  +    L+   +++ +  P +  + + F V GV S  VA  L    V V AGLH AP AH   G   +  V +  + ++  H
Sbjct:  136 ELMILNHVSNVFGYAAPLDAIAGLLDAAGVPLLLDASQS--AGMIDLDVRRYPCLAAVCMPGHKALYGPQGTGLLLALDDRIAAHPLLAGGTGSLSEQMAQPEF---------LPDALESGTPNVPGIAGLAAGL------AFVRAVGPAHMLAHERRLAAETARALERETRIECFAHPAQTGVLS-FRVPGVPSETVAEALARQGVAVRAGLHCAPLAHRTAGTEQTGTVRLSFSFYSTVH 359          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A3E0PE85_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0PE85_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 5.390e-6
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 0
Query:   43 VQVSDISFSAIASRVSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD-KCGADFVLADCSSVGVPMAFLYGKKTRWVALPPSFGGEH-SLSAC 152
            +Q SD+       ++  KT  +V+QS +FFG   DL+++ E     G  +V+ V++++S G+L+    CGAD V+A+  S GVPM               SFGG H  L AC
Sbjct:  192 IQESDLE------KIDEKTAALVVQSPNFFGCIEDLEALAEKAHEKGALLVVVVTEAISFGLLKTPGNCGADIVVAEGQSFGVPM---------------SFGGPHVGLFAC 282          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A2V8REL0_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8REL0_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 5.390e-6
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:   57 VSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLR-VDKCGADFVLADCSSVGVPMAF------LYGKKTRWVA-LPPSFGGEHS 148
            +  +T  IV+QS +FFG+  DL+++ E   A G  +++ V++++S G+LR    CGAD V+A+  S GVP++F      L+  + ++   +P    GE S
Sbjct:  200 IDDQTGAIVVQSPNFFGSIEDLEALSEKAHANGALLIVAVTEAMSFGLLRSAGACGADIVVAEGQSFGVPLSFGGPYVGLFATRDKYARQIPGRLVGEAS 299          
BLAST of Gvermi8803.t1 vs. uniprot
Match: A0A2V8SPZ6_9BACT (Probable glycine dehydrogenase (decarboxylating) subunit 1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8SPZ6_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 7.190e-6
Identity = 40/154 (25.97%), Postives = 78/154 (50.65%), Query Frame = 0
Query:    3 ALAQSY--SQLLKPHDQVVLADVSEGCVRTWNALSERRRFRVVQVSDISFSAIASRVSA------KTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSLSSGVLRVD-KCGADFVLADCSSVGVPMAF------LYGKKTRWVALPP 141
            A A++Y  +Q +   D++++AD      R         +    ++  + F     ++++      KT  +V+QS +FFG   D+ +I E   A G  +++ V++++S G+L+   +CGAD V+ +  S GVPM+F      L+  + ++V   P
Sbjct:  138 AAAEAYVMAQRVTRRDKIIVADTVHPEYR--EVARTYTQHGAAEIVSVGFDEATGQIASLDGLDDKTAAVVIQSPNFFGCVEDIAAIAEKAHAVGALLIVVVTEAISFGLLKSPGECGADIVVGEGQSFGVPMSFGGPHVGLFATQEKFVRQMP 289          
The following BLAST results are available for this feature:
BLAST of Gvermi8803.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2V3IM87_9FLOR9.870e-8645.75Putative cysteine desulfurase n=1 Tax=Gracilariops... [more]
E8LEA9_9FIRM1.960e-1224.76Cysteine desulfurase n=5 Tax=Phascolarctobacterium... [more]
A0A2V8S2J7_9BACT1.260e-637.89Probable glycine dehydrogenase (decarboxylating) s... [more]
A0A1Q7NEH3_9BACT1.690e-641.10Probable glycine dehydrogenase (decarboxylating) s... [more]
A0A2V8Q496_9BACT1.690e-637.97Probable glycine dehydrogenase (decarboxylating) s... [more]
A0A2V8PPK6_9BACT3.040e-636.90Probable glycine dehydrogenase (decarboxylating) s... [more]
UPI0004E11DC24.650e-626.45aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A3E0PE85_9BACT5.390e-634.82Probable glycine dehydrogenase (decarboxylating) s... [more]
A0A2V8REL0_9BACT5.390e-634.00Probable glycine dehydrogenase (decarboxylating) s... [more]
A0A2V8SPZ6_9BACT7.190e-625.97Probable glycine dehydrogenase (decarboxylating) s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000192Aminotransferase class V domainPFAMPF00266Aminotran_5coord: 3..295
e-value: 1.7E-24
score: 86.5
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3D3.40.640.10coord: 1..194
e-value: 7.9E-19
score: 69.7
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 202..308
e-value: 7.3E-15
score: 56.9
NoneNo IPR availablePANTHERPTHR43586CYSTEINE DESULFURASEcoord: 14..303
NoneNo IPR availablePANTHERPTHR43586:SF4ISOPENICILLIN N EPIMERASEcoord: 14..303
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 5..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:84244..85173 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8803.t1Gvermi8803.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 84244..85173 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8803.t1 ID=Gvermi8803.t1|Name=Gvermi8803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MRALAQSYSQLLKPHDQVVLADVSEGCVRTWNALSERRRFRVVQVSDISF
SAIASRVSAKTKLIVLQSTSFFGNNHDLQSILEFLQATGIPVVLNVSDSL
SSGVLRVDKCGADFVLADCSSVGVPMAFLYGKKTRWVALPPSFGGEHSLS
ACCFTQEYDLGGNNWGPIPERFEVGTSCLPRIASLKAVVDEYNETSLKKS
RSPSITESHGMYLYEQLQSCKKVQVYGSPERRALFACFNVEGVDSFRVAA
ELGESRVYVNAGLHGAPKAHAMLGINSSIRVHIDAAKHTAEHIDHFIQCL
NNAVNKLAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000192Aminotrans_V_dom
IPR015421PyrdxlP-dep_Trfase_major
IPR015422PyrdxlP-dep_Trfase_small
IPR015424PyrdxlP-dep_Trfase