Gvermi8801.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8801.t1
Unique NameGvermi8801.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length360
Homology
BLAST of Gvermi8801.t1 vs. uniprot
Match: A0A2V3IZS0_9FLOR (Replication factor C subunit 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZS0_9FLOR)

HSP 1 Score: 608 bits (1568), Expect = 3.910e-218
Identity = 310/357 (86.83%), Postives = 336/357 (94.12%), Query Frame = 0
Query:    1 MSSEGLLWVDKYRPCTHSELSYHSSLTKNLQSLSNIDMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKLEKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDVKKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFLRQQATMMN 357
            MS+EGLLWVDK+RP T SELSYHS LTKNLQSLSN ++PHLLFYGPSGAGKRTRVHCVLR LFGQ VEKKKVVHRTLK+E KQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLD+KK LKVIV+HDVDQM++LAQQALRRTMERYSKTCRVIMVAES+T+VLEPLRSRC+GIRVALPSK DI  VLQ+VA +EG+TLP  L +R+A+TS RN+RRALLQFEATRVS+GAL LP +AQVMLGDWEY CQDLAVMLTRSQTA QLIAVRK+LQELLAHAVPGD+ILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAF+ARFMQIYAAFL+QQA MM+
Sbjct:    1 MSTEGLLWVDKHRPSTFSELSYHSVLTKNLQSLSNTEVPHLLFYGPSGAGKRTRVHCVLRALFGQVVEKKKVVHRTLKVETKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDMKKSLKVIVLHDVDQMSQLAQQALRRTMERYSKTCRVIMVAESITKVLEPLRSRCLGIRVALPSKSDIGVVLQSVAHKEGITLPDALVQRIAETSGRNLRRALLQFEATRVSVGALELPSDAQVMLGDWEYVCQDLAVMLTRSQTAHQLIAVRKKLQELLAHAVPGDVILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFAARFMQIYAAFLKQQAAMMD 357          
BLAST of Gvermi8801.t1 vs. uniprot
Match: R7Q9E5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9E5_CHOCR)

HSP 1 Score: 512 bits (1319), Expect = 4.530e-180
Identity = 259/367 (70.57%), Postives = 309/367 (84.20%), Query Frame = 0
Query:    1 MSSEGLLWVDKYRPCTHSELSYHSSLTKNLQSL-SNIDMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKL--EKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLD-------VKKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFLRQQATMMN 357
            M+S+ LLWVDKYRP +  ELS+H  LTK L++L S+ D+PHLLFYGPSGAGKRTR  CVL+ LFG   +KKKVVHR  K+    KQ+EVTTVAS+HH+E NPSESGNNDRLVVQELIKDMAS AP+D       +KK LKVIV+H+VDQM+RLAQQALRRTME+YS+TCR+IM+AESVTRVLEPLRSRC+GIRV LP++  I SVL  +A+REGV+LP  L++RLA  S RN+RRA+LQFEATRVS+G L LPP A +M GDWEYAC D A+++TRSQ+A QL+ VRKRLQELLAHA+P D+ILRRL+E IL IADDEICPEIC+++AKFDRNLT GTKPIFHLEAF+ARFMQ+YA FLR QA M++
Sbjct:    1 MASDSLLWVDKYRPSSFDELSFHEDLTKRLRNLCSSNDIPHLLFYGPSGAGKRTRAGCVLKALFGPRADKKKVVHRVFKVGESSKQVEVTTVASSHHVEFNPSESGNNDRLVVQELIKDMASFAPIDMTSSNVSIKKSLKVIVLHEVDQMSRLAQQALRRTMEKYSRTCRIIMIAESVTRVLEPLRSRCLGIRVGLPTEGHIQSVLSGIAKREGVSLPEPLSKRLAQQSSRNLRRAILQFEATRVSVGGLDLPPGAPIMRGDWEYACNDAAILMTRSQSAQQLVHVRKRLQELLAHAIPPDVILRRLVENILNIADDEICPEICQLSAKFDRNLTNGTKPIFHLEAFAARFMQVYAQFLRSQAVMLD 367          
BLAST of Gvermi8801.t1 vs. uniprot
Match: A0A7S2ZIE5_9RHOD (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZIE5_9RHOD)

HSP 1 Score: 347 bits (889), Expect = 1.960e-114
Identity = 184/387 (47.55%), Postives = 261/387 (67.44%), Query Frame = 0
Query:    2 SSEGLLWVDKYRPCTHSELSYHSSLTKNLQSLSN-IDMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKL--EKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDV---KKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVS--------MGALA--LP--------------PEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFLRQQATMMND 358
            ++ GLLWVDKYRP T  E+ +H  L + L+ ++   D+PHLLF+GP G+GKRTRV C+LR ++G A EK KV HR+ K+    K+IE+T ++S HHIE NPS++G +DRL+VQELIK++AS+APLDV   K   KVIV+H+VD ++R  QQALRRTME+YS+TCR+I++A+S+T+++EPLRSRC  +RV  PS+++I +VLQ V+++EG  LP Q A ++     +N+RR LLQ +++++         +GA    +P              P   V   DWE  C D+A +L R Q+  +L+ VR R  ELL HA+P D I  R+  E+LR AD EI P IC  AA+++  L +G K I HLEAF+ARFMQIY  ++  Q +M+ D
Sbjct:    4 NNRGLLWVDKYRPATLEEMDFHLELKERLEGMAQRADIPHLLFHGPPGSGKRTRVSCLLRLIYGPAAEKLKVEHRSFKVGDPPKEIEMTILSSVHHIEANPSDAGFSDRLIVQELIKEIASNAPLDVTAVKVPFKVIVLHEVDSLSRTGQQALRRTMEKYSRTCRLILMADSLTKIIEPLRSRCNLVRVPSPSEKEICAVLQKVSKKEGFELPDQFAVKVTRACSKNLRRGLLQLQSSKMDNYPFAEDQVGATPPNIPSCTSFLSSSVGFFNPTQPVSRADWELVCIDIASLLMREQSNKRLLLVRTRFYELLTHAIPADAIFERVTMELLRSADQEIAPAICECAAEYEHRLKQGQKAIIHLEAFAARFMQIYKEYIDNQYSMLID 390          
BLAST of Gvermi8801.t1 vs. uniprot
Match: M2XY78_GALSU (Replication factor C subunit 3/5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY78_GALSU)

HSP 1 Score: 337 bits (864), Expect = 1.580e-110
Identity = 176/373 (47.18%), Postives = 250/373 (67.02%), Query Frame = 0
Query:    5 GLLWVDKYRPCTHSELSYHSSLTKNLQSLSNID-MPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKLEK--KQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLD---VKKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLG----------------DWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFLRQQATM 355
            GLLWVDKYRP T   L  H   T+ L SL     +PHLLFYGPSG GKRTR++ +LR +FG A+EK++V HR LK+ +  K++E+TT+ SAHHIE+ P++ G NDRLV+QE++K++ASS P++   V +G KV+V+HD+D++++ AQQALRRTME+Y+  CR+IM AESVTRV+EP+RSRC+GIR+  P KE+I  VLQ +A++EG+ LP   A +L   S  N+R+A+L  +  R    A+A P   Q                    DWE  C D+A ++ R Q   QL  +R +L EL  HA+PGDMI R++   +LR+ D+E+ P++C  AA ++  + +G+K IFHLEAF A+ M IY + +  Q +M
Sbjct:   28 GLLWVDKYRPKTLETLDIHPEWTEKLASLCEQGTLPHLLFYGPSGVGKRTRIYALLRQVFGIAIEKRQVEHRFLKVGEPPKEVELTTITSAHHIELCPADVGYNDRLVIQEIVKEIASSKPIELGNVHRGYKVVVLHDIDEVSKQAQQALRRTMEKYTSCCRIIMSAESVTRVMEPIRSRCLGIRIPCPKKEEIEQVLQKIAKKEGLVLPDCYANQLVTQSKGNLRKAILLLQVGR----AIAYPFSQQXXXXXXXXXXSWISSQETGWDWERLCYDIANIVIREQNPKQLCNIRNKLYELFCHAIPGDMIFRKITLHLLRMMDEEVAPQVCHWAAHYEYGMKRGSKEIFHLEAFLAKVMYIYYSHIHTQYSM 396          
BLAST of Gvermi8801.t1 vs. uniprot
Match: A0A2P6NPP5_9EUKA (Replication factor C subunit 3 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NPP5_9EUKA)

HSP 1 Score: 325 bits (834), Expect = 1.300e-106
Identity = 164/351 (46.72%), Postives = 244/351 (69.52%), Query Frame = 0
Query:    3 SEGLLWVDKYRPCTHSELSYHSSLTKNLQSLSNID-MPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKLEKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDV---KKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFL 349
            ++G LWVD+YRP +  +L  H+ LT  L+ +   D +PHLLFYGPSGAGK+TRV  VLR LFG +VEK KV H+ +K+  K IE++ V+S+HH+EVNPS+    DR+VVQE+IK++A S PLD    +K  KV+V+H+VD++++ AQ ALRRTME+Y  TCR+I+V  S ++V++PLRSRC+ +RV LP+ ++I S LQ++A++EGV L   LA R+A+ S RN+R+A+L FEA +V     A  P   +   DWE   + +A  +++ Q+  +L  +R R  ELL H +P ++I++ L  E+L   D E+  ++ + AA +++ +  G+KPIFHLEAF A+FM +Y  FL
Sbjct:    4 NDGTLWVDRYRPTSLEKLDIHTDLTNQLKKMCTSDNLPHLLFYGPSGAGKKTRVKAVLRSLFGASVEKVKVEHKAIKINTKTIEISIVSSSHHVEVNPSDVEFQDRVVVQEIIKEIAQSVPLDAGTAQKSFKVVVLHEVDKLSKDAQHALRRTMEKYVATCRLILVCNSTSKVIDPLRSRCLPVRVPLPTIKEITSTLQSIAKKEGVNLSTDLANRIAEQSGRNLRKAILSFEAAKVKQYPFA--PNQVIERADWEDFIKQMADEISQEQSPQRLQLIRSRFYELLVHCIPPEIIMKNLTMELLGRVDTELKYDVVKWAAHYEQRMQTGSKPIFHLEAFVAKFMSLYKQFL 352          
BLAST of Gvermi8801.t1 vs. uniprot
Match: A0A5J4YYK4_PORPP (Replication factor C subunit 3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYK4_PORPP)

HSP 1 Score: 320 bits (820), Expect = 6.760e-104
Identity = 174/381 (45.67%), Postives = 240/381 (62.99%), Query Frame = 0
Query:    5 GLLWVDKYRPCTHSELSYHSSLTKNLQSLSNI-DMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKL--EKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDV---------------------------------KKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFL 349
            GL+WVDK+R    ++L  H +L   L +L    D+PHL FYGP GAGKRTRV  VL  LFG + EK +V HR  KL    K++E+T V S HH+E+NPS+ G  DRLVVQE+IK++ASS PLD                                  K   KV+V+HDVD+M+RLAQQALRRTME+Y++TCR+IM+A S ++V+EPLRSRC+G+RV LPS  ++V VL++VA +EG  +      ++  +S RNMRRALLQ EA++      +   E QV   DWE AC  ++ ++   Q    L+ VR++L +LL HA+P D+I   ++  +LR  D E+ P++   AA ++  + KG+KPI HLEAF ARFMQ+Y A+L
Sbjct:   15 GLMWVDKHRSTNLAKLEVHKALNVRLLNLVRQGDVPHLFFYGPPGAGKRTRVMGVLHELFGASAEKLRVQHRVFKLGDPPKEVEMTLVMSNHHVEMNPSDVGIKDRLVVQEMIKEIASSVPLDAFQTTKKKEQNAAGPEPQGAAAAGANTSNNSAAHKPAFKVLVLHDVDRMSRLAQQALRRTMEKYARTCRIIMLATSASKVIEPLRSRCLGVRVPLPSDTELVQVLRHVANKEGFIVTDSFGAKVVASSGRNMRRALLQLEASKSQNYPFSA--EQQVTKADWELACASISDLMLVQQAPRTLLTVRQKLYDLLTHAIPADIIFHAIVANLLRQVDQELAPQLVAHAAMYEHRMQKGSKPILHLEAFCARFMQLYKAYL 393          
BLAST of Gvermi8801.t1 vs. uniprot
Match: A0A8J2WW47_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WW47_9STRA)

HSP 1 Score: 317 bits (813), Expect = 1.880e-103
Identity = 167/353 (47.31%), Postives = 242/353 (68.56%), Query Frame = 0
Query:    6 LLWVDKYRPCTHSELSYHSSLTKNLQSLSNI-DMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKLE-KKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDVKKG-------LKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFL 349
            +LWVDK+RP    +LSYH+ L + L S++   D+PHLLFYGPSGAGK+TRV C+L+ L+G   EK+++ HR  K    K IEVTTVAS +HIE+NPS++GNNDR VVQE+IK++A S  +  K G        KVI+M +VD+++R AQ  LRRTME+ S  CR++M+  + ++V++P+RSRC+GIR+A PS+E+IV VL  V ++E +TLP +LA R+A +S RN+RRA+L  E  +V+       P   V   DWE   + +A  + R Q+ ++L+A R +L ELLA  +P D+IL+ L  E++   DDE+ P++   AA ++  + +G+K IFHLEAF A+FM IY  F+
Sbjct:    1 MLWVDKHRPTALEKLSYHAELGERLGSMAEDGDIPHLLFYGPSGAGKKTRVQCLLKALYGAGAEKQRLEHREFKTPTNKTIEVTTVASNYHIEMNPSDAGNNDRFVVQEVIKEIAQSGSVLAKTGAQKKGPAFKVILMVEVDRLSRQAQAGLRRTMEKSSSACRLVMICTNPSKVIDPIRSRCLGIRIAAPSEEEIVGVLHEVCEKERLTLPDELAARIAKSSGRNLRRAILALEECKVAQ--YPFNPSMPVPQPDWEVYIKAIAQDICREQSPARLVATRDKLYELLAKCIPADVILKELCAELVSKLDDELKPQVMACAAFYEHRVQQGSKEIFHLEAFVAKFMVIYKKFM 351          
BLAST of Gvermi8801.t1 vs. uniprot
Match: UPI000C6DEFD7 (replication factor C subunit 3-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DEFD7)

HSP 1 Score: 317 bits (812), Expect = 2.580e-103
Identity = 162/347 (46.69%), Postives = 243/347 (70.03%), Query Frame = 0
Query:    7 LWVDKYRPCTHSELSYHSSLTKNLQSLSNI-DMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKL-EKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLD--VKKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFL 349
            LWVDK+RP   S+L YH     NL+ L    D PHLL YGPSG+GK+TR+ C+LR L+G  +EK K+ H+T     KK+IE+ T++S +HIE+NPS+ G  DR+V+QE++K++A +  L+  V+K  KV+V+ +VD++T+ AQ ALRRTME+Y  TCR+I+   S ++V+  +RSRC+G+RVA PS E+IV++L+N  +REG+TLP +LA+++A+ S+RN+RRALL  EA RV     +  P+  V+L DWE   Q+ A M+ + Q+  +L  VR RL E+LAH +P D+I + LL+ ++   D ++  E+ ++AA ++  +  G+K I+HLEAF A+FM IY  FL
Sbjct:    3 LWVDKHRPTHLSKLDYHKEQANNLKKLVQAGDFPHLLIYGPSGSGKKTRIMCLLRELYGTGIEKLKIEHQTFTTASKKKIEIATISSNYHIEINPSDIGIYDRVVIQEMLKNVAQTQQLETNVQKDFKVVVLMEVDKLTKDAQHALRRTMEKYMTTCRLILCCNSSSKVIPAVRSRCLGVRVAAPSIEEIVNILKNTCRREGLTLPTELAQKIAEKSNRNLRRALLMCEACRVQQYPFS--PDQNVILPDWEIYLQETANMIVQEQSPKRLFEVRGRLYEVLAHLIPPDIIFKNLLKALISNCDGQLKAEVIKLAAYYEHRMELGSKAIYHLEAFVAKFMAIYKKFL 347          
BLAST of Gvermi8801.t1 vs. uniprot
Match: V4AAH2_LOTGI (AAA domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AAH2_LOTGI)

HSP 1 Score: 316 bits (809), Expect = 7.340e-103
Identity = 167/348 (47.99%), Postives = 238/348 (68.39%), Query Frame = 0
Query:    7 LWVDKYRPCTHSELSYHSSLTKNLQSL-SNIDMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVV--HRTLKLEKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLDV--KKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFL 349
            LWVDK+RP    +L YH     NL+ L ++ D+PHLL YGPSGAGK+TR+ C+LR L+G   EK ++   H T    KK IE++T+AS +HIEVNPS+ GNNDR+V+QELIK++A    LD   +K  KV+V+ +VD++T+ AQ  LRRTME+Y  TCR+I+   S ++V+  +RSRC+G+RVA PS+E+I  +LQNV ++EG TLP +LA+R+A+ S+RN+RRALL  EA +V     +   +  +   DWE   +D A M+ + Q+  +L+ VR RL ELL H +P D+I++ LL+E+L   D ++  E+ + AA +D  L  G K I+HLEAF A+FM IY  FL
Sbjct:    3 LWVDKHRPSQLHKLDYHKQQAANLKKLIASGDLPHLLVYGPSGAGKKTRITCILRELYGAGAEKLRIEQSHFTTPSNKK-IEISTIASNYHIEVNPSDVGNNDRIVIQELIKNLAQVNQLDSSSQKEFKVVVLTEVDRLTKDAQHGLRRTMEKYMATCRLILCCNSTSKVIPAIRSRCLGVRVAAPSEEEIAQILQNVCKKEGCTLPAELAKRIANKSNRNLRRALLMCEACKVQQYPFSA--DQTISEPDWEIYLRDTATMIVQQQSPKRLLEVRARLYELLTHCIPADVIIKGLLQELLANCDGQLKTEVVQAAAYYDHRLQIGQKAIYHLEAFVAKFMAIYKQFL 347          
BLAST of Gvermi8801.t1 vs. uniprot
Match: UPI001CF44FE1 (replication factor C subunit 3-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF44FE1)

HSP 1 Score: 316 bits (809), Expect = 7.340e-103
Identity = 160/349 (45.85%), Postives = 238/349 (68.19%), Query Frame = 0
Query:    7 LWVDKYRPCTHSELSYHSSLTKNLQSLSNI-DMPHLLFYGPSGAGKRTRVHCVLRGLFGQAVEKKKVVHRTLKL-EKKQIEVTTVASAHHIEVNPSESGNNDRLVVQELIKDMASSAPLD--VKKGLKVIVMHDVDQMTRLAQQALRRTMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVAQREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVMLGDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEEILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFLRQ 351
            LWVDKYRP + S+L YH  L  +L+ L +  D PHLL YGPSGAGK+TR+ C+LR L+G  VEK K+ H+T      K+IE+TT  S +HIEVNPS++G  DR+VVQELIK +A S  L+   ++  KV+V+ +VD++T+ AQ +LRRTME+Y+ TCR+I+   S ++V+  +RSRC+G+RVA P+ E+I  +L NV ++EG+++P +L++R+A+ S+RN+RRALL  EA RV        P+  V   DWE   ++ A  +   QT  +L+ +R RL ELL H +P D+IL+ L+ E++   D  +  E+  +AA ++  + +G+K ++HLEAF A+FM IY  FL +
Sbjct:    3 LWVDKYRPTSLSKLDYHKDLATHLKKLVHCGDFPHLLVYGPSGAGKKTRIMCILRELYGAGVEKLKIEHQTFTTPSNKKIEMTTTGSTYHIEVNPSDAGIYDRIVVQELIKTVAQSHQLESSTQREFKVVVLTEVDRLTKDAQHSLRRTMEKYTTTCRLILCCNSTSKVIPAIRSRCLGVRVAAPTAEEICQILHNVCKKEGLSIPAELSKRIAEKSNRNLRRALLMCEACRVQQ--YPFTPDQHVQEADWEIYLRETAQQIVEQQTPKRLLEIRSRLYELLTHCIPPDIILKGLVSELVTNCDGSLKTEVTNMAAYYEHRIHQGSKAVYHLEAFVAKFMSIYKRFLEE 349          
The following BLAST results are available for this feature:
BLAST of Gvermi8801.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZS0_9FLOR3.910e-21886.83Replication factor C subunit 3 n=1 Tax=Gracilariop... [more]
R7Q9E5_CHOCR4.530e-18070.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZIE5_9RHOD1.960e-11447.55Hypothetical protein n=5 Tax=Rhodosorus marinus Ta... [more]
M2XY78_GALSU1.580e-11047.18Replication factor C subunit 3/5 n=1 Tax=Galdieria... [more]
A0A2P6NPP5_9EUKA1.300e-10646.72Replication factor C subunit 3 n=1 Tax=Planoprotos... [more]
A0A5J4YYK4_PORPP6.760e-10445.67Replication factor C subunit 3 n=1 Tax=Porphyridiu... [more]
A0A8J2WW47_9STRA1.880e-10347.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI000C6DEFD72.580e-10346.69replication factor C subunit 3-like n=1 Tax=Centru... [more]
V4AAH2_LOTGI7.340e-10347.99AAA domain-containing protein n=1 Tax=Lottia gigan... [more]
UPI001CF44FE17.340e-10345.85replication factor C subunit 3-like n=3 Tax=Acropo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.272.10coord: 252..345
e-value: 1.7E-25
score: 91.1
NoneNo IPR availableGENE3D1.10.8.60coord: 188..242
e-value: 7.0E-14
score: 53.1
NoneNo IPR availablePFAMPF13177DNA_pol3_delta2coord: 40..183
e-value: 3.3E-10
score: 40.3
NoneNo IPR availablePANTHERPTHR11669:SF1REPLICATION FACTOR C SUBUNIT 3coord: 7..346
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 7..346
NoneNo IPR availableCDDcd00009AAAcoord: 39..188
e-value: 3.16059E-6
score: 44.4443
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 6..187
e-value: 1.5E-45
score: 157.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..235
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 271..340
e-value: 6.6E-6
score: 26.5
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 252..345

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:80855..81934 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8801.t1Gvermi8801.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 80855..81934 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8801.t1 ID=Gvermi8801.t1|Name=Gvermi8801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=360bp
MSSEGLLWVDKYRPCTHSELSYHSSLTKNLQSLSNIDMPHLLFYGPSGAG
KRTRVHCVLRGLFGQAVEKKKVVHRTLKLEKKQIEVTTVASAHHIEVNPS
ESGNNDRLVVQELIKDMASSAPLDVKKGLKVIVMHDVDQMTRLAQQALRR
TMERYSKTCRVIMVAESVTRVLEPLRSRCVGIRVALPSKEDIVSVLQNVA
QREGVTLPGQLAERLADTSDRNMRRALLQFEATRVSMGALALPPEAQVML
GDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDMILRRLLEE
ILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYAAFLR
QQATMMNDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR013748Rep_factorC_C
IPR008921DNA_pol3_clamp-load_cplx_C