Gvermi6870.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6870.t1
Unique NameGvermi6870.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length595
Homology
BLAST of Gvermi6870.t1 vs. uniprot
Match: A0A2V3IX35_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX35_9FLOR)

HSP 1 Score: 607 bits (1565), Expect = 1.700e-201
Identity = 319/594 (53.70%), Postives = 403/594 (67.85%), Query Frame = 0
Query:    1 MNNAIKREVVCHSESGDSARGKTLRDPFREECHKANVEPIALENAAYPKRSSRASN----PGRHSSITPADPLHRHAVEHEHSFASRGRATDGRI------SEAELKRLRELCPHKDEWGRSAWWKLESDEDVKFLPELLVYFRLYELRDLLIDFRWIMRMFRCVNFSEGMFLAPARAYDVILRYAMSPSSQLPLPDVESFRLLRNAIMVILPVLYKDKARATEQGFHAHLATQLTGRLLSLKRKFPTVACLIQSIELYAPKPWLKPLTRCFRQPRTDIALAVPSEGIVVPHQIALSDDGKFLVTLNKSSRKQLHKKAAVKGGAAPAGLRDDADNKPAAASLQRTPSSSSISVWEVRTGKRVVEVCNVGERISHVAITKDNNCIIGGTNEDIFFWHLDKGNTWTASAARQGHPPARGLSSIRPTSNPRRVLTAHKIEGKSVILEWDTQTGSREKVYDAVESKPNCIDIHSLRGYFASGHDNGFIHLWNLSDDNNDTPILTFKDEGDRQGAQNGVSLVDANKEKDSGSVFGLGSGTISISFLEKEDDLSLASISSKRGDKQ------HWIRIWVLPPQKFLDGSSQAFVSCKRVA 578
            +NNAIKRE+VC SESG S RGKT RD FRE+CHKA V+   LE+ A PKR+           RH +    D  + +    + S  SR R            +E  L+RLRE CPHKDEWG +AWW L+ +  ++ LP LLV   LYELR+LLIDFRWIMR FR V+FS GM   P   YDVILRYA S +S+LPL D+ESFRL+RNA+MVILPVL +D+A   +Q FHAHLATQ+ GRLLSLKR+FPT+A LIQS+EL+AP PWLKPLTRCF+QPRTDIALAVPSEGI  PHQI LS DG+FLVT N S R+     ++ +     +G+  +   +P AA  Q      SI++W+V +GK+V EV  +   + H+AIT+DNNCIIG TN+ +FFWH + G TW      +  P  +GLSSI+PT+ P+ VLT HK+E + +I  WDTQTGSRE++Y +V SKPNCID+ S   +FASGHDNGFIHLWN  DD    PILTF+DEG  +G+Q  VSL +AN ++D      + +GTISISF E+++DL LAS+S    D+         IRIW+LPP++ L    Q+FVSCKR A
Sbjct:  345 INNAIKRELVCRSESG-STRGKTFRDLFREKCHKARVQLGPLEDKARPKRAPHLPPVYPLSTRHHTTAVTDATNPYPPPVDGSSFSRARPAQSDYHPNMAHTEPRLRRLRESCPHKDEWGHTAWWTLQDENHIRLLPTLLVDHNLYELRNLLIDFRWIMRTFRSVDFSHGMPQTPTEGYDVILRYAASQNSRLPLVDIESFRLVRNALMVILPVLSQDQAHPVDQSFHAHLATQIVGRLLSLKRRFPTIASLIQSVELHAPTPWLKPLTRCFQQPRTDIALAVPSEGIFRPHQIVLSHDGRFLVTANVSIRQDPVVSSSGED-LVMSGVFRNGSREPTAAKHQGVRKLVSITIWDVHSGKQVGEVGGIKSHVVHLAITRDNNCIIGETNDGLFFWHFETGETWRLKDVHKATPRLKGLSSIKPTTKPQLVLTTHKLEKEPLIALWDTQTGSRERMYSSVSSKPNCIDVSSKMEFFASGHDNGFIHLWNWKDDK---PILTFRDEGTGKGSQQVVSLSEANSQRDPDGKGQVNTGTISISFFERDNDLLLASVSWNPADRSKIRKTPELIRIWLLPPRRILADDVQSFVSCKRTA 933          
BLAST of Gvermi6870.t1 vs. uniprot
Match: R7QKS7_CHOCR (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKS7_CHOCR)

HSP 1 Score: 347 bits (889), Expect = 2.090e-104
Identity = 229/628 (36.46%), Postives = 327/628 (52.07%), Query Frame = 0
Query:    1 MNNAIKREVVCHSESGDSARGKTLRDPFREECHKANVEPIALEN------AAYPKRSSRASNP----------------GRHSSITPADPLHRHAV-EHEHSFASRGRATDGRIS-----------EAELKRLRELCPHKDEWGRSAWWKLESDEDVKFLPELLV--YFRLYELRDLLIDFRWIMRMFRCVNFSEGMFLAPARAYDVILRYAMSPSSQLPLPDVESFRLLRNAIMVILPVLYKDK-ARATEQGFHAHLATQLTGRLLSLKRKFPTVACLIQSIELYAPKPWLKPLTRCFRQPRTDIALAVPSEGIVVPHQIALSDDGKFLVTLNKS------SRKQLHKKAAVKGGAAPAGLRDDADNKPAAASLQRTPSSSSISVWEVRTGKRVVEVCNVGERISHVAITKDNNCIIGGTNEDIFFWHLDK-GNTWTASAARQGHPPARGLSSIRPTSNPRRVLTAHKIEGKS-----VILEWDTQTGSREKVYDAVESKPNCIDIHSLRGYFASGHDNGFIHLWNLSDDNNDTPILTFKDEGD-RQGAQNGVSLVDANKEKDSGSVFGLGSGTISISFLEKEDDLSLASISSKRGDKQHWIRIWVLPPQKFLDGSSQAFVSCKRVA 578
            +NNAIKRE+    ES  S++ KT RD FRE+C    V+   LE         YP  ++    P                G   S+  A P+   A  +  +    + R +D R             +  L R R+ C   DEWGR+AWW L  + D+  LP  L   Y  L+ELR+LL+DFRWI R F C + SE M      +YD++L    +   +LP  +VE+FRL+RNA+ +I P+L  D      +  F AHLATQL GRLLSLK +FP +ACLIQSIEL+APKPWL+PL  CF++P TDI +AVPS G + PH IALS DG  L            S K+  +K      +    L+   + +  A  +      SSI +W+V TG+ V  V  +   +  +AIT D++C+I  T + +FFW L+K  + + A  A +  P    ++S+ PT   R +LT  +  G        I  W+T TG R + +D V S+  C D+     YFASGH+NG+IHLW L     + P+L+FK+EG   +  Q  V+L   N+ + +G++      TIS+SF  KE+   LA++S+        IR+W LPP   +    ++FV+  R A
Sbjct:   74 VNNAIKRELDTPVESRSSSKSKTFRDLFREQCRAGRVQLPKLEQPPLPGPVPYPSSAASRQTPIAPSLHLPHIAPAAESGEPHSLYAASPVGPRAYPDMTYINLKKRRLSDQRTPLPTSNAVVLPLQDALLRYRDSC-RTDEWGRTAWWNLAIN-DINKLPLWLAHDYTYLFELRNLLLDFRWIRRTFECAD-SETMHQVSTSSYDLLLDIPKTDPGRLPAIEVEAFRLIRNALKLITPILASDSIVNPKDDTFIAHLATQLVGRLLSLKTRFPLIACLIQSIELHAPKPWLRPLNPCFQEPGTDIKMAVPSNGTLTPHLIALSPDGALLAVSGTRKVPSVISAKETERKPYTSLSSTVKKLKAITEGRSTARKV------SSICIWDVETGRLVCRVERIENLVRCLAITPDHSCVIAETVDGLFFWKLEKLSDGYRAGKAVEATPRPNPVTSMMPTVRTRELLTTSRSGGDESMHTGTIALWNTDTGERVRTFDCVTSQATCTDVSLDGEYFASGHNNGYIHLWTLHGSETE-PVLSFKNEGAVAENGQQHVALDKVNRTRSNGTL-----KTISLSFYGKEEQRWLAAVSANE-----IIRVWELPPGSIIRKGKESFVTTIRRA 681          
The following BLAST results are available for this feature:
BLAST of Gvermi6870.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX35_9FLOR1.700e-20153.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKS7_CHOCR2.090e-10436.46WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 439..478
e-value: 0.036
score: 23.2
coord: 348..386
e-value: 150.0
score: 3.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 284..573
e-value: 1.4E-16
score: 62.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..334
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..68
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 282..561

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:314909..320723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6870.t1Gvermi6870.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 314909..320723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6870.t1 ID=Gvermi6870.t1|Name=Gvermi6870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=595bp
MNNAIKREVVCHSESGDSARGKTLRDPFREECHKANVEPIALENAAYPKR
SSRASNPGRHSSITPADPLHRHAVEHEHSFASRGRATDGRISEAELKRLR
ELCPHKDEWGRSAWWKLESDEDVKFLPELLVYFRLYELRDLLIDFRWIMR
MFRCVNFSEGMFLAPARAYDVILRYAMSPSSQLPLPDVESFRLLRNAIMV
ILPVLYKDKARATEQGFHAHLATQLTGRLLSLKRKFPTVACLIQSIELYA
PKPWLKPLTRCFRQPRTDIALAVPSEGIVVPHQIALSDDGKFLVTLNKSS
RKQLHKKAAVKGGAAPAGLRDDADNKPAAASLQRTPSSSSISVWEVRTGK
RVVEVCNVGERISHVAITKDNNCIIGGTNEDIFFWHLDKGNTWTASAARQ
GHPPARGLSSIRPTSNPRRVLTAHKIEGKSVILEWDTQTGSREKVYDAVE
SKPNCIDIHSLRGYFASGHDNGFIHLWNLSDDNNDTPILTFKDEGDRQGA
QNGVSLVDANKEKDSGSVFGLGSGTISISFLEKEDDLSLASISSKRGDKQ
HWIRIWVLPPQKFLDGSSQAFVSCKRVAKKLQKLCYAGVNDAQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf