Gvermi6695.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6695.t1
Unique NameGvermi6695.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length170
Homology
BLAST of Gvermi6695.t1 vs. uniprot
Match: A0A2V3INA1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INA1_9FLOR)

HSP 1 Score: 185 bits (469), Expect = 5.080e-57
Identity = 102/171 (59.65%), Postives = 127/171 (74.27%), Query Frame = 0
Query:    1 MEFENATQAVSAAIRSIFERWTALKLIIEHQMAGIPDEAIKLMEMTVSMATSSSKRHDEDDFVDLFYDAFDQMQSDVEDGSPEEIASQVVRVRDAAAKGDFTLAVQLVSKAHLTNTGSQA--QSVNGGEAFVEHSEDDQYESELPHPSASVQEPSVDDNGFTEVSKSGRHR 169
            M+FE+A QAVS AIRSIF+RWTALKL+IEHQM G PD AI+LM + V+MAT+ S+RHDEDDF+DLFY+AF++MQ+D+EDGSPEEIA+ VVR+RDAAA+GD+T A +   K       SQA  +SV+GGEA V   E ++     P P    QE   DD+GFTEV   GRHR
Sbjct:    1 MQFESAQQAVSTAIRSIFDRWTALKLVIEHQMGGNPDPAIELMNIAVAMATNPSERHDEDDFIDLFYEAFNRMQADIEDGSPEEIAALVVRIRDAAARGDYTPASEASLKEQ---PSSQAFHRSVSGGEAVVHECEREKTPCRPPQPR---QESIADDDGFTEVKSGGRHR 165          
BLAST of Gvermi6695.t1 vs. uniprot
Match: A0A7S0ZFQ2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFQ2_9RHOD)

HSP 1 Score: 82.4 bits (202), Expect = 1.310e-16
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 0
Query:    5 NATQAVSAAIRSIFERWTALKLIIEHQMAGIPDEAI--KLMEMTVSMATSSSKRHDEDDFVDLFYDAFDQMQSDVEDGSPEEIASQVVRVRDAAAKGDFTLAVQLVSKAHLTNTGSQAQSVNGGEAFVEHSEDDQYESELPHPSASV-------QEPSVDDNGFTEVSKSGRHR 169
             A + +   + + F RWTA+++ I+ +  G   E I   LM   V  A +S +    +   D  YDAFD M  D+EDGSPEE+A+ ++ +R A   GDF+   +L  KA L +    +  V      + + +DD    +    S+SV       QEP VD++GFT V   GR R
Sbjct:    7 EALKELERGVYAAFARWTAVQIAIQERFGGRETEDIIRDLMSECV-FAAASERPASVEQIADKMYDAFDSMNCDLEDGSPEEMATMILDLRAACLAGDFSKIRELERKAALDSNAVMSLCVRD----IRNDDDDDETMDTSEASSSVRNTQNQYQEPIVDEDGFTVVQPKGRRR 175          
BLAST of Gvermi6695.t1 vs. uniprot
Match: A0A5J4Z174_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z174_PORPP)

HSP 1 Score: 82.4 bits (202), Expect = 1.490e-16
Identity = 58/184 (31.52%), Postives = 95/184 (51.63%), Query Frame = 0
Query:    5 NATQAVSAAIRSIFERWTALKLIIEHQMAGIPDEAIKLMEMTVSMATSSSKRHDEDDFVDLFYDAFDQMQSDVEDGSPEEIASQVVRVRDAAAKGDFTLAVQLVSKAHLTNTGSQAQSVNGGEAFVEHSEDD-------------------QYESELPHPSASVQEPSVDDNGFTEVSKSGRHR 169
             A + +   + ++F RWTAL++ ++ + AG   E+I    +  +   SS  R +++  V +FYDAFD+M  D+EDGS E++AS V ++RD    G F     LV+KA    +   +Q+V    + +E ++D+                     E++ P PS     P VD++GFT V KS R+R
Sbjct:    7 EAHRQLKRGLSALFARWTALQIALQERFAGSQTESIVQDMIETTYQLSSGSRLNQEKLVSMFYDAFDRMNCDLEDGSAEDMASAVAQLRDECHHGRFAYVDDLVAKAQRDRSAILSQNVR---SVLEDNDDEXXXXTVGGQNGDSASSVPSMMETDSPTPSRPAA-PEVDEDGFTLV-KSKRNR 185          
BLAST of Gvermi6695.t1 vs. uniprot
Match: A0A0L0HVG6_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HVG6_SPIPD)

HSP 1 Score: 62.8 bits (151), Expect = 4.490e-9
Identity = 52/175 (29.71%), Postives = 89/175 (50.86%), Query Frame = 0
Query:   13 AIRSIFERWTALKLIIEHQMAGIP--DEAIKLMEMTVSMATSSSKRHDEDDFVDLFYDAFDQM-QSDVEDGSPEEIASQVVRV-RDAAAKGDFTLAVQLVSKAHLTNTGSQAQSVNGGEAFVEHSEDDQYESELPHPSASVQ-------------EPSVDDNGFTEV-SKSGRHR 169
            A++ +FERWTAL+L ++HQMAGI   +   +L+E T +            +  +   D FD++  ++++DGSPE+I   +VR+ RD   +G     +++ +KA  +   +  +SV  G+   + S DD+ +      +  V              +P VD++GF  V SK GR R
Sbjct:   18 AVQCVFERWTALQLALDHQMAGISTAERPQELLEHTCAFFQQYRTDVMPHEIAENLKDFFDEVFNAELDDGSPEQIGKTLVRLYRDVVVEGKTEEVLEMKAKAQSSGRAA-GESVKAGDG--DDSSDDEVDGSTGSDAMEVDSGPTQSETSNRRPDPVVDEDGFELVQSKKGRRR 189          
The following BLAST results are available for this feature:
BLAST of Gvermi6695.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3INA1_9FLOR5.080e-5759.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0ZFQ2_9RHOD1.310e-1633.33Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z174_PORPP1.490e-1631.52Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A0L0HVG6_SPIPD4.490e-929.71Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 13..86
e-value: 1.2E-7
score: 32.1
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 5..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..169
NoneNo IPR availablePANTHERPTHR21250:SF0PRE-RRNA-PROCESSING PROTEIN TSR2 HOMOLOGcoord: 5..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1962972..1963481 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6695.t1Gvermi6695.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1962972..1963481 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6695.t1 ID=Gvermi6695.t1|Name=Gvermi6695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=170bp
MEFENATQAVSAAIRSIFERWTALKLIIEHQMAGIPDEAIKLMEMTVSMA
TSSSKRHDEDDFVDLFYDAFDQMQSDVEDGSPEEIASQVVRVRDAAAKGD
FTLAVQLVSKAHLTNTGSQAQSVNGGEAFVEHSEDDQYESELPHPSASVQ
EPSVDDNGFTEVSKSGRHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019398Pre-rRNA_process_TSR2