Gvermi6660.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6660.t1
Unique NameGvermi6660.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length452
Homology
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BLAST of Gvermi6660.t1 vs. uniprot
Match: A0A2V3INA8_9FLOR (RNase NYN domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INA8_9FLOR)

HSP 1 Score: 429 bits (1103), Expect = 1.530e-144
Identity = 223/444 (50.23%), Postives = 310/444 (69.82%), Query Frame = 0 
Query:    7 PTAAPAAPSPPPSVWLRFTGYSAPHFDHSNVVLEFCRAARREFSPLVRAVAPFQFSAPIDCRLPCHGPHSFVLYTLQPRQVTITNGATALFRFSIDTHAVCQRLLSGAPQPLALSVSSPAGLQLSYEASLDPPLYTSTEEATVLSALDDDASPLAT--APPAPRSLRPLDLSFSSVSEDGDSAEDSPRASDSFPSKRAKRHSKVRFSDTLQIIPSTQQLKEDVDLATAERARLSRDFGDLAAQLSQLQNELRDVKQSVKTINHPAAQSDALRAAGDLLRPHAAPTKRRRVVLDGHSVACSYGKGKFRPQGISAALQYYHTRGFNAVAVVSKRALEHGNSSRERSQDALLAQLVDSGLVAVTTSRSRREEFMLRYALDHNAYVVSNECLQSRPNPTRSA-REQRRLQSFLDSHRIPFMFIANEFVPTSPSLRHSRSSDCLRTHCR 447
            P++  +   P P +W+ FTGY+AP+F   NVV++F RA+RREFS +V A  P  FS+PIDC+LP +  ++FVLY L P   T+T  AT L RFS+DT A+ +RL +   QP+ LS +SP G+Q+ YEAS  PPL+ + +E++VLS++ DD   + T  A     S   LD SFSSVSE+ D+ + SP       S  +KR  KVRF+D L +IP+TQQLK D+D A  ERA+LS    DL+ Q+S+LQ ELR VK+S+   NH +  +  ++    L    ++  KR+RVVLD HSVAC+YG G+FRPQGI+ ALQYYH R  +AVA+ SKRA++   SS + S+D+ L QL+ +GL+AVT S SRR++F++RY+LDHNAY+VSNE ++ +P+  +S+ R+QR +QSFLDSHRI FMF+AN+FVP SPS+R S+S+DC+ T  R
Sbjct:    5 PSSTASVSDPAPQLWISFTGYTAPNFTPRNVVIQFMRASRREFSHVVTASTPCHFSSPIDCKLPLNAQNAFVLYALNPDATTLTEAATVLLRFSLDTTAIHKRLEAAVQQPICLSKTSPTGVQIKYEASTAPPLHLALDESSVLSSIQDDTPSIPTTLAKALTSSSSALDSSFSSVSEEEDAIDHSP-------STHSKRKPKVRFTDKLHLIPTTQQLKSDLDNAAIERAQLSNSLTDLSVQVSRLQRELRHVKKSLNLANHSSPCTSFVQPVNHLSMSSSSCAKRQRVVLDAHSVACAYGNGQFRPQGIAVALQYYHNRDIHAVAIASKRAIDTALSSGKSSRDSALQQLIHTGLLAVTNSHSRRQDFIIRYSLDHNAYIVSNESMRYKPSSKQSSKRDQRFIQSFLDSHRIQFMFVANDFVPISPSIRQSKSTDCITTVSR 441
The following BLAST results are available for this feature:
BLAST of Gvermi6660.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INA8_9FLOR1.530e-14450.23RNase NYN domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 220..261
NoneNo IPR availableGENE3D3.40.50.11980coord: 291..444
e-value: 2.2E-26
score: 94.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..201
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 291..437
e-value: 3.1E-15
score: 56.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1857926..1859281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6660.t1Gvermi6660.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1857926..1859281 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6660.t1 ID=Gvermi6660.t1|Name=Gvermi6660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=452bp
MADRRTPTAAPAAPSPPPSVWLRFTGYSAPHFDHSNVVLEFCRAARREFS
PLVRAVAPFQFSAPIDCRLPCHGPHSFVLYTLQPRQVTITNGATALFRFS
IDTHAVCQRLLSGAPQPLALSVSSPAGLQLSYEASLDPPLYTSTEEATVL
SALDDDASPLATAPPAPRSLRPLDLSFSSVSEDGDSAEDSPRASDSFPSK
RAKRHSKVRFSDTLQIIPSTQQLKEDVDLATAERARLSRDFGDLAAQLSQ
LQNELRDVKQSVKTINHPAAQSDALRAAGDLLRPHAAPTKRRRVVLDGHS
VACSYGKGKFRPQGISAALQYYHTRGFNAVAVVSKRALEHGNSSRERSQD
ALLAQLVDSGLVAVTTSRSRREEFMLRYALDHNAYVVSNECLQSRPNPTR
SAREQRRLQSFLDSHRIPFMFIANEFVPTSPSLRHSRSSDCLRTHCRRDS
F*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12_NYN