Gvermi6636.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6636.t1
Unique NameGvermi6636.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length152
Homology
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A2V3IND1_9FLOR (E3 ubiquitin-protein ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IND1_9FLOR)

HSP 1 Score: 270 bits (691), Expect = 2.480e-91
Identity = 134/151 (88.74%), Postives = 145/151 (96.03%), Query Frame = 0
Query:    1 MGVSWSSVSDCLGDISGSSSTRYNRVPPSRRVEQSSTNSRSERAALRQRCINEEKHLSISVASPGAAIAPPPPPLIPDSNAVYNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEA-DKLQS 150
            MGVSWSSVSDCLGDISGSS+TRYNRVPPSRRVEQSST SR++R ALRQR +++EK L+ISVASPGAAIAPPPPPLIPDSNAVYNLL+DEDEDVCPTCLE YEKDNPKI+SRCGHAFHLQCIVAWETRSGTRFCPICAK+MEYVEA DK+QS
Sbjct:    1 MGVSWSSVSDCLGDISGSSNTRYNRVPPSRRVEQSSTTSRTDRTALRQRYLSDEKQLAISVASPGAAIAPPPPPLIPDSNAVYNLLEDEDEDVCPTCLETYEKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEAQDKIQS 151          
BLAST of Gvermi6636.t1 vs. uniprot
Match: R7Q462_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q462_CHOCR)

HSP 1 Score: 198 bits (504), Expect = 9.040e-63
Identity = 108/156 (69.23%), Postives = 123/156 (78.85%), Query Frame = 0
Query:    1 MGVSWSSVSDCLGDIS-GSSSTRYNRVPPSRRVEQSSTNSRS-ER-AALRQRCI---NEEKHLSISVASPGAAIAPPPPPLIPDSNAVYNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEADKLQS 150
            MGVSWSSVSDCLG  S GS+  RY+RVPPS RV  SS +SR  ER +ALRQR     +EEK    +V S GAAIAP   PL+PDSNAVYNLLDDE EDVCPTCLE Y +DNPKI S CGH+FHLQCIVAWETRSG+RFCPICAK+MEY EA++ ++
Sbjct:    1 MGVSWSSVSDCLGSFSDGSAHPRYSRVPPSHRVGPSSVSSRQPERLSALRQRSTPPASEEKLAHCAVPSQGAAIAPXXXPLVPDSNAVYNLLDDEQEDVCPTCLECYAEDNPKISSTCGHSFHLQCIVAWETRSGSRFCPICAKVMEYAEAEQFRT 156          
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A7S1ETP9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETP9_9RHOD)

HSP 1 Score: 96.7 bits (239), Expect = 1.020e-22
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 0
Query:   54 EKHLSISVASPGAAIAPPPPPLIPDSNAVYNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEADKL 148
            ++H+     +P     P PPPL+PDS AVY+LL+ E E+VCPTCLE Y  +NP++ S C H FHL CI  W  RS   +CPICAK M + +  ++
Sbjct:   40 KQHIGFEEGTPSP---PLPPPLVPDSKAVYDLLEGEHEEVCPTCLEEYTNENPRMTSMCQHTFHLACIYEWLERSP--YCPICAKKMMFADGSEM 129          
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A7S1TND2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TND2_9RHOD)

HSP 1 Score: 91.7 bits (226), Expect = 1.680e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 0
Query:   54 EKHLSISVASPGAAIAPP-PPPLIPDSNAVYNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLM 140
            EK++     +P    APP PPPL+PD+ AVY+L++ E EDVCPTCLE Y  DNPK+ S C H+FHL C+  W  RS   +CPICA+ M
Sbjct:   64 EKNIGFEEGTP----APPVPPPLVPDAKAVYDLIEGE-EDVCPTCLEEYTIDNPKMTSECQHSFHLACVYEWLERSP--YCPICAQRM 144          
BLAST of Gvermi6636.t1 vs. uniprot
Match: M2WVX4_GALSU (Zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WVX4_GALSU)

HSP 1 Score: 94.0 bits (232), Expect = 1.890e-20
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   75 LIPDSNAVYNLL-DDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVE 144
            L+P+S AVY L+ +DE ED+CPTCLE Y ++NPKI ++CGH FHL CI  W  RS  R+CP+CA +ME+ E
Sbjct:  204 LVPESTAVYELVSEDEKEDICPTCLEPYTEENPKITAKCGHTFHLSCIYEWLERS--RYCPVCANIMEFEE 272          
BLAST of Gvermi6636.t1 vs. uniprot
Match: M2XWK4_GALSU (Zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XWK4_GALSU)

HSP 1 Score: 88.2 bits (217), Expect = 9.090e-19
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0
Query:   65 GAAIAPPPPPLIPDSNAVYNLLDDED-EDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVE 144
            G    P PPPL+ D  AV +L+++   ED CPTCLE Y+ +NPKI+++CGH++HL C+  W  RS   +CPICA  ME+ E
Sbjct:  122 GGPSPPKPPPLVADRTAVDDLIEESSKEDFCPTCLEPYDAENPKIVAKCGHSYHLACLYEWLERSP--YCPICAARMEFAE 200          
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A0V0H326_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H326_SOLCH)

HSP 1 Score: 83.6 bits (205), Expect = 6.430e-18
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 0
Query:   83 YNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEAD 146
            +++   EDEDVCPTCLE Y  DNPKI ++C H +HL CI  W+ RS T  CP+C KLME+ E +
Sbjct:   59 HDVCSSEDEDVCPTCLEEYTPDNPKIFTKCSHHYHLSCIYEWQERSET--CPVCGKLMEFEETN 120          
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A0A9D226_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D226_ARUDO)

HSP 1 Score: 82.4 bits (202), Expect = 1.070e-17
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   83 YNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEA 145
            Y ++  EDEDVCPTCLE Y  DNPKI+++C H FHL CI  W  RS T  CPIC K ME+ E+
Sbjct:   39 YTVVTSEDEDVCPTCLEEYTPDNPKIITKCCHHFHLGCIYEWMERSDT--CPICGKEMEFCES 99          
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A804PZR7_MAIZE (RING-type domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804PZR7_MAIZE)

HSP 1 Score: 81.3 bits (199), Expect = 3.350e-17
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   83 YNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEA 145
            Y ++  EDEDVCPTCLE Y  DNPKI+++C H FHL CI  W  RS T  CPIC K ME+ E+
Sbjct:   43 YAVVASEDEDVCPTCLEEYTPDNPKIITKCCHHFHLGCIYEWMERSDT--CPICGKEMEFCES 103          
BLAST of Gvermi6636.t1 vs. uniprot
Match: A0A0E0JT12_ORYPU (RING-type domain-containing protein n=12 Tax=Oryzeae TaxID=147380 RepID=A0A0E0JT12_ORYPU)

HSP 1 Score: 82.0 bits (201), Expect = 1.420e-16
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   80 NAVYNLLDDEDEDVCPTCLEIYEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVE 144
            N  + ++  EDEDVCPTCLE Y  DNPKI+++C H +HL CI  W  RS T  CPIC K ME+ E
Sbjct:  128 NGSFAVVTSEDEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDT--CPICGKEMEFCE 190          
The following BLAST results are available for this feature:
BLAST of Gvermi6636.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IND1_9FLOR2.480e-9188.74E3 ubiquitin-protein ligase n=1 Tax=Gracilariopsis... [more]
R7Q462_CHOCR9.040e-6369.23RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A7S1ETP9_9RHOD1.020e-2247.37Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1TND2_9RHOD1.680e-2053.41Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
M2WVX4_GALSU1.890e-2057.75Zinc finger (C3HC4-type RING finger) family protei... [more]
M2XWK4_GALSU9.090e-1949.38Zinc finger (C3HC4-type RING finger) family protei... [more]
A0A0V0H326_SOLCH6.430e-1854.69Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A0A9D226_ARUDO1.070e-1758.73RING-type domain-containing protein n=1 Tax=Arundo... [more]
A0A804PZR7_MAIZE3.350e-1758.73RING-type domain-containing protein n=1 Tax=Zea ma... [more]
A0A0E0JT12_ORYPU1.420e-1655.38RING-type domain-containing protein n=12 Tax=Oryze... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 94..136
e-value: 1.1E-7
score: 41.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 94..136
score: 12.267982
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 79..151
e-value: 1.6E-13
score: 51.7
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 91..136
e-value: 1.5E-9
score: 38.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..45
NoneNo IPR availablePANTHERPTHR46463:SF39ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 28..142
NoneNo IPR availablePANTHERPTHR46463ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 28..142
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 86..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1791078..1791533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6636.t1Gvermi6636.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1791078..1791533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6636.t1 ID=Gvermi6636.t1|Name=Gvermi6636.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=152bp
MGVSWSSVSDCLGDISGSSSTRYNRVPPSRRVEQSSTNSRSERAALRQRC
INEEKHLSISVASPGAAIAPPPPPLIPDSNAVYNLLDDEDEDVCPTCLEI
YEKDNPKILSRCGHAFHLQCIVAWETRSGTRFCPICAKLMEYVEADKLQS
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2