Gvermi6618.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6618.t1
Unique NameGvermi6618.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length249
Homology
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BLAST of Gvermi6618.t1 vs. uniprot
Match: A0A2V3IRQ7_9FLOR (Ikaros family zinc finger protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ7_9FLOR)

HSP 1 Score: 65.5 bits (158), Expect = 8.650e-9
Identity = 44/135 (32.59%), Postives = 61/135 (45.19%), Query Frame = 0 
Query:   62 SSPFSTFDSVSTPVLSIRKGSQQPNSSAAAWQLSRMQQ------GKSQAPMGHTSQPTAKTPESQIPQSAATAASLLSLTCPTCGTSFPDRDSYKKHLAVLNHGHSXXXXXXXXXXXXXXXXXIKTVHEKEKPYI 190
            S  F+  ++ S+P+L++RKG+Q   S       +R+++      G +Q                   Q     +S  SLTCPTCGT  P RDSYKKH+  L HG+                  +KTVH  EKPYI
Sbjct:  136 SKDFTLLEAASSPLLTLRKGAQLDGSRTTTHSSTRLKKHLHRWTGNAQK-QXXXXXXXXXXXXXXXSQDETANSSDKSLTCPTCGTQLPSRDSYKKHVDTLGHGYECSSCGAKFADMGNLNRHVKTVHNNEKPYI 269
The following BLAST results are available for this feature:
BLAST of Gvermi6618.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRQ7_9FLOR8.650e-932.59Ikaros family zinc finger protein n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 218..243
e-value: 2.6
score: 17.0
coord: 189..212
e-value: 0.0063
score: 25.7
coord: 160..183
e-value: 0.0029
score: 26.8
coord: 134..158
e-value: 0.043
score: 23.0
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 135..155
e-value: 3.5E-4
score: 20.9
coord: 218..237
e-value: 5.7E-4
score: 20.2
coord: 160..183
e-value: 2.4E-4
score: 21.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 191..212
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 162..183
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 218..245
score: 10.117529
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 189..217
score: 12.507586
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 160..188
score: 14.128668
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 184..213
e-value: 5.0E-8
score: 34.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 98..183
e-value: 1.1E-11
score: 46.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 215..239
e-value: 1.2E-5
score: 27.1
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 189..212
e-value: 6.2E-4
score: 20.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..124
NoneNo IPR availablePANTHERPTHR24404ZINC FINGER PROTEINcoord: 10..238
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 183..236
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 160..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1680291..1681431 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6618.t1Gvermi6618.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1680291..1681431 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6618.t1 ID=Gvermi6618.t1|Name=Gvermi6618.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=249bp
MASSSSTSRIRRQPSNLFSRNRSTVHPPASSRRPHNESQNVSSDIQRNFP
PQAQTHHASGISSPFSTFDSVSTPVLSIRKGSQQPNSSAAAWQLSRMQQG
KSQAPMGHTSQPTAKTPESQIPQSAATAASLLSLTCPTCGTSFPDRDSYK
KHLAVLNHGHSCAKCGNKFADKGNLNRHIKTVHEKEKPYICDQCGMGFSF
RDSLRRHVDAVHWSIRPFRCANCEKSYKKKDHLRRHLLASPGHKAANQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf