Gvermi6578.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6578.t1
Unique NameGvermi6578.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length247
Homology
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A2V3IXJ8_9FLOR (DNA replication complex GINS protein SLD5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXJ8_9FLOR)

HSP 1 Score: 318 bits (815), Expect = 3.900e-107
Identity = 160/247 (64.78%), Postives = 202/247 (81.78%), Query Frame = 0
Query:    1 MSSYSDHGDEIPRFSFGSMALSEEQA--GHAQSRLPNIVADDEIQQSSLNEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAGPNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVEL 245
            MSS S H ++ PRFSFG+MALSEE +    AQSRL N+ + D+   +SLNEA+D+M MLARNEQ+SPE+LP++TQT+ VI+ LV QQ D+VD+ED+ E++ S+ESQLKRLE+DRINY LRHY+RVRI KIE NI  + KN +    LS+AE++YA+DYK L++DHF KSFLSMLPQ+IQV+E DG+V+H AGPNLDRFVFCRVR++VGR+A+GED  SD +NL   DILCVRYK IAELL+ EDVEL
Sbjct:    1 MSSDSQHDNDTPRFSFGAMALSEEPSRLARAQSRLQNVASIDDAPNTSLNEAVDIMRMLARNEQYSPELLPFQTQTVSVIRSLVSQQLDIVDQEDELEENTSIESQLKRLELDRINYLLRHYYRVRIAKIENNIFFISKNAEASELLSDAEEKYAADYKRLIDDHFSKSFLSMLPQKIQVLEVDGSVDHAAGPNLDRFVFCRVRNDVGRIALGEDEGSDALNLGHGDILCVRYKGIAELLKGEDVEL 247          
BLAST of Gvermi6578.t1 vs. uniprot
Match: R7Q402_CHOCR (DNA replication complex GINS protein SLD5 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q402_CHOCR)

HSP 1 Score: 250 bits (638), Expect = 2.770e-80
Identity = 131/246 (53.25%), Postives = 183/246 (74.39%), Query Frame = 0
Query:    5 SDHGDEIPRFSFGSMALSEEQAGHA---QSRLPNIVADDEIQQSSLNEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAE-DSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAGPNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV 246
            S + D+ PRFSFGSMAL+EE         S L ++  D +     LNE +D +  +A NE F PEILP+ET+TIQ +   VKQQ++LV+EE+D   D++S ESQLKR+EIDRINY LRHY+R+RIKKIE ++L +FK+ +T   LS+ E+ +A+ Y  L+E+HFKKSFLSMLP+++QV++KDG V+H  GPNL +FVFC+V+++VG  AVGE++  + ++LNQ DILC+RYKSI +LL   DV+L+
Sbjct:    3 STNNDDQPRFSFGSMALTEEPGRGPLAIDSHLSHL--DPDQLGGQLNETLDKLRTVAVNEYFCPEILPFETETIQAMSSEVKQQTELVEEEEDESVDALSFESQLKRMEIDRINYLLRHYYRMRIKKIEGSVLFIFKDLNTFELLSKHEQNFATGYMDLVEEHFKKSFLSMLPKKVQVLDKDGNVDHATGPNLHKFVFCKVKNSVGSYAVGEEAGDETLDLNQGDILCIRYKSIQQLLMKGDVDLI 246          
BLAST of Gvermi6578.t1 vs. uniprot
Match: F0WP87_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WP87_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.590e-26
Identity = 67/206 (32.52%), Postives = 114/206 (55.34%), Query Frame = 0
Query:   45 SSLNEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLE----SQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAGPNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV 246
            + +NE I+ M  L RNE  +P+IL Y    +  +   +K Q   +D   D   +++ E    ++L ++EIDR+ Y L  Y R R++KIE    H+ K T  L+ LSE E  YA  + SL+  H   + LS +P+  +V++ DG       PNLD+FVFC+ +  +G+V   +D  ++ + + + D   +RY+SI+  + ++ V L+
Sbjct:    8 NDINEDIEKMMTLWRNELNAPDILNYNNDLVVALLEQIKNQQGYIDSIGDDRGNLTEERSFTNKLYQMEIDRLRYVLASYLRTRLQKIERYSKHIVKTTVYLDRLSEKECIYAQQHASLIATHLNNTALSRIPEEHRVLDSDGMALE---PNLDKFVFCQSQEELGQVRC-DDRGAEFVQVREKDRHVIRYRSISNFVETDQVFLI 209          
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A6H5KSS9_9PHAE (DNA replication complex GINS protein SLD5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSS9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.970e-26
Identity = 68/207 (32.85%), Postives = 112/207 (54.11%), Query Frame = 0
Query:   45 SSLNEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTD--TLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAG-PNLDRFVFCRVRSNVGRVAVGEDSVSD--GINLNQNDILCVRYKSIAELLRSEDVELV 246
            S LNE +  +  L RNE  +PE+L  +   +  +   V+ Q ++VD+   A    +  + L ++E+DR+ Y+L  Y R R++K+E + LH+    D      LS+ E+ +A  Y  +LEDHF ++ LS +P   + +      E+    PNLD FV CR R +VG V +GE +  +   ++L Q D+  VRY+ I  L+    V+L+
Sbjct:   31 SDLNEDVAKLRTLWRNEVCAPELLKVDEHLVSDLIQQVENQQEIVDDAR-ASPEEAFSASLYQMELDRLRYSLSKYLRTRLRKVERDALHVLATADGEMQGRLSDREREHAKGYVDMLEDHFTRTCLSQMPSNFRSLTNTSQEENMVQEPNLDTFVVCRARDDVGLVQIGEAAGREESSMDLRQGDMFIVRYRPIRTLVLEGRVDLI 236          
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A0L0D2U3_THETB (DNA replication complex GINS protein SLD5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2U3_THETB)

HSP 1 Score: 108 bits (270), Expect = 2.360e-25
Identity = 63/200 (31.50%), Postives = 112/200 (56.00%), Query Frame = 0
Query:   48 NEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQ-VIEKDGTVEHDAGPNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV 246
            N  I+ +     NE+FSP +L +E   +  +   VK+Q D+V  E D  D  +  ++LK+LE++R+ Y LR Y+R R++KIE+  +++ KN      LS AE  Y   Y  L+ +H  +SFL+ LP++++ +  +D   +    PN D  VFC+V   +G   + +DS    ++L + ++  + +K I +LL  + + L+
Sbjct:   22 NNDIEALKQAWLNEKFSPHVLIFEDALVARVSEDVKEQEDVVAGELD--DGATFMTRLKQLELERVKYLLRSYYRTRLRKIEKFCMYILKNPVVRTRLSPAELEYTQRYVDLMAEHLNESFLNGLPEKLRDLTTQDAEDDMIPAPNFDTHVFCKVVDTIGTFQLDQDS---SVDLEEGELYLLPFKPIRDLLLDQSIILI 216          
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A024GPQ5_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPQ5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.510e-25
Identity = 63/206 (30.58%), Postives = 112/206 (54.37%), Query Frame = 0
Query:   45 SSLNEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLE----SQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAGPNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV 246
            + +NE ++ M  L RNE  +P++L Y    +  +   +K Q + +D   D  + ++ E    ++L ++EIDR+ Y L  Y R R+KKIE+   ++ K    L+ LSE E+ YA  + +L+  H   + LS +P   Q ++ +G       PNLD FVFC+ +  VG+V   +D  ++ + + + D   +RY+SI   ++S  + L+
Sbjct:    8 NDVNEDVEKMITLWRNELNAPDMLEYNNDLVAALLEQIKNQQEYIDSISDNRECLTEERSFTNKLYQMEIDRLRYMLASYLRTRLKKIEKYSQYIIKTPAYLDRLSEKERIYAQQHAALVATHLNNAALSKIPDEHQSLDSEGMASE---PNLDEFVFCQSQGEVGQVRC-DDRGAEFVQVREKDRHVIRYRSIDNFVKSNQIFLI 209          
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A250XBE6_9CHLO (DNA replication complex GINS protein SLD5 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XBE6_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 3.200e-24
Identity = 68/212 (32.08%), Postives = 110/212 (51.89%), Query Frame = 0
Query:   40 DEIQQSSLNEAIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAG-----PNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV 246
            D+   S+ +  ++ +     NE+ +PEILPY+   ++ +Q  V++Q DL+ E+ D E +  L   +  LE+ RI Y LR YFR R++K+E    H+  + + +  LS  E+ Y  D+  L   H K + L  LP   Q + K      D       P LD  VFC VR +VG + + ED+V D   +  N++  +RY  +++L+ S    LV
Sbjct:   18 DDSSPSTSSNIVEKLIRAVFNEKNAPEILPYQADMVKDLQEKVEKQEDLLAEDLDREPAQELRKIVFSLELKRIRYLLRLYFRTRLRKLEATAAHVLGDEEMMERLSPLEQLYTQDFFVLAGTHLKGACLDRLPLDFQSVVKTHEGLADGNDMVLVPPLDAHVFCSVREDVGSIPLEEDNVLD---MKANELFIIRYSLVSKLVMSGQAVLV 226          
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A2P6NQT8_9EUKA (DNA replication complex GINS protein SLD5 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NQT8_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 8.060e-24
Identity = 70/211 (33.18%), Postives = 116/211 (54.98%), Query Frame = 0
Query:   36 IVADDEIQQSSLNEAIDMMGMLARNEQFSPEILPYETQTI-QVIQVLVKQQSDLVDEEDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAGPNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVEL 245
            I A+DE  + SL + I    +   NE+ +PE+L Y+ + + Q+ Q L  Q+  +     + +    L +  +++EIDRI+Y LR Y R RI KIE++      +      LS +E+++A  Y  L++ H+++SFL  LP R+   E+D      A  NLD +V CRV   +G++ + +D   +   LN+ND++ +RY+ I  LL    VEL
Sbjct:   33 IDAEDEGGKGSLVQKIKTAAL---NERSAPELLEYKEELVDQIKQSLRSQKQRINGPFTEFQFEEKLFTSFQQMEIDRISYLLRSYLRSRIVKIEKHHSKFVSDETYHQRLSPSEQKFAQSYTDLIKSHYRESFLQSLPDRVNSGEEDAMT---ARINLDEYVICRVLERIGQIEL-DDQTDEFAELNENDVVLIRYRPIQHLLVEGKVEL 236          
BLAST of Gvermi6578.t1 vs. uniprot
Match: D8LTQ1_ECTSI (DNA replication complex GINS protein SLD5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ1_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.100e-23
Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 0
Query:   50 AIDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTD--TLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAG-PNLDRFVFCRVRSNVGRVAVGEDSVSD--GINLNQNDILCVRYKSIAELLRSEDVELV 246
            A  +   L RNE  +PE+L  +   +  +   V+ Q ++VD+   A    +  + L ++E+DR+ Y+L  Y R R++K+E + LH+    D      LS+ E+ +A  Y  +LEDHF ++ LS +P   + +      E+    PNLD FV CR R +VG V +GE +  +   ++L Q D+  VRY+ I  L+    V+L+
Sbjct:   36 AFGLSRTLWRNEVSAPELLKVDEHLVSDLIQQVENQQEIVDDAR-ASPEEAFSASLYQMELDRLRYSLSKYLRTRLRKVERDALHVLATVDGEMQGRLSDREREHAKGYVDMLEDHFTRTCLSQMPSNFRSLTNTSQEENMVQEPNLDTFVVCRARDDVGLVQIGEAAGREESSMDLRQGDMFIVRYRPIRTLVLGGRVDLI 236          
BLAST of Gvermi6578.t1 vs. uniprot
Match: A0A1U8ABZ2_NELNU (DNA replication complex GINS protein SLD5 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8ABZ2_NELNU)

HSP 1 Score: 102 bits (255), Expect = 4.350e-23
Identity = 64/201 (31.84%), Postives = 114/201 (56.72%), Query Frame = 0
Query:   51 IDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDE-EDDAEDSISLESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEKRYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAG----PNLDRFVFCRVRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV 246
            ++++    RNE+ +PEIL ++   IQ  +  ++   D V+E  ++  D +++   L ++++DR  + LR Y R+R++KIE+ ++H+ +  +  N LSE E+R+A      +E H K+S LS LP   Q I K      +      P LD FVFC+ + +VG   + +DS  + ++L  +D+  +RYKSI  L+    ++LV
Sbjct:   25 VELLKQAWRNEKAAPEILQFQASLIQRSREQIQLMEDTVEEFTENGTDPLTV--SLYQMDLDRTQFLLRSYLRIRLQKIEKYMIHISRTNELWNRLSEQEQRFAKRCTDDMEKHLKQSVLSRLPYGYQSILKQSISSEEDDMVPEPQLDTFVFCKSKGSVGAFQL-DDSGDEIVDLVGDDLYVLRYKSIKALVERGQIDLV 222          
The following BLAST results are available for this feature:
BLAST of Gvermi6578.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXJ8_9FLOR3.900e-10764.78DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
R7Q402_CHOCR2.770e-8053.25DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
F0WP87_9STRA2.590e-2632.52DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A6H5KSS9_9PHAE6.970e-2632.85DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A0L0D2U3_THETB2.360e-2531.50DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A024GPQ5_9STRA5.510e-2530.58DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A250XBE6_9CHLO3.200e-2432.08DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A2P6NQT8_9EUKA8.060e-2433.18DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
D8LTQ1_ECTSI1.100e-2332.18DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A1U8ABZ2_NELNU4.350e-2331.84DNA replication complex GINS protein SLD5 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.58.1030coord: 37..235
e-value: 2.1E-47
score: 163.4
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 192..246
IPR031633DNA replication complex GINS protein SLD5, C-terminalPFAMPF16922SLD5_Ccoord: 191..246
e-value: 6.4E-15
score: 55.1
IPR008591GINS complex subunit Sld5PIRSFPIRSF007764GINS_Sld5coord: 18..246
e-value: 1.3E-37
score: 127.3
IPR008591GINS complex subunit Sld5PANTHERPTHR21206SLD5 PROTEINcoord: 31..246
IPR038749GINS complex protein Sld5, alpha-helical domainCDDcd11711GINS_A_Sld5coord: 50..169
e-value: 3.22789E-28
score: 101.918
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILY158573GINS helical bundle-likecoord: 48..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1389831..1390571 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6578.t1Gvermi6578.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1389831..1390571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6578.t1 ID=Gvermi6578.t1|Name=Gvermi6578.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=247bp
MSSYSDHGDEIPRFSFGSMALSEEQAGHAQSRLPNIVADDEIQQSSLNEA
IDMMGMLARNEQFSPEILPYETQTIQVIQVLVKQQSDLVDEEDDAEDSIS
LESQLKRLEIDRINYTLRHYFRVRIKKIEENILHMFKNTDTLNNLSEAEK
RYASDYKSLLEDHFKKSFLSMLPQRIQVIEKDGTVEHDAGPNLDRFVFCR
VRSNVGRVAVGEDSVSDGINLNQNDILCVRYKSIAELLRSEDVELV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031633SLD5_C
IPR008591GINS_Sld5
IPR038749Sld5_GINS_A
IPR036224GINS_bundle-like_dom_sf