Gvermi6549.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6549.t1
Unique NameGvermi6549.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Homology
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A2V3IH59_9FLOR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH59_9FLOR)

HSP 1 Score: 254 bits (649), Expect = 6.330e-80
Identity = 135/266 (50.75%), Postives = 174/266 (65.41%), Query Frame = 0
Query:   48 AMDSSSKPVSYPSGKAKDETRVFVDSLFRQGDVVELPHEEQKHLRARRFRSGDKLVLFNSVGQTAASEYQNQKVLILEVS-GSGQKDHNLSHLIAIPRKPSRADWLVEKLTELGADSITFMQTNRTVVADPSPNKLHRWRRIAVSASKQSMRDSTPEILVVDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAICQFFYGGTFQDERRKRRSR 312
            A+DSSS  ++YP+GK K +TRVF+D  FR G+V+ LP EE KHLRA RF++GD+ VLFN  G +A +  QN+  ++LE    +       S LIA+P+  SR+D +VEKLTELGAD ITFM+T RT+   PS NKL RW RIA++ASKQS+RD  PEI  +DF +A++ V  HPLP LL   G  LLSS       RE+  L +VGPEGGFE  E   L +AGA  +SLG  RLR ETAAI S A I Q  Y    +++    +S+
Sbjct:   50 AVDSSSDSLAYPTGKRKSDTRVFLDIGFRTGEVISLPQEEFKHLRALRFKNGDEFVLFNGAGDSATAALQNKTAVVLEARYKTTHLKAQFSALIAVPKTGSRSDSIVEKLTELGADCITFMRTKRTIATMPSANKLERWNRIAIAASKQSLRDVPPEIAAIDFSSALETVVLHPLPFLLCSMGDLLLSSSCQTRIRREKQALVIVGPEGGFEMSEARQLTEAGAIPVSLGSNRLRIETAAIVSVALISQILYTTMIREDEASNKSK 315          
BLAST of Gvermi6549.t1 vs. uniprot
Match: R7QLU6_CHOCR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLU6_CHOCR)

HSP 1 Score: 176 bits (447), Expect = 9.530e-50
Identity = 100/248 (40.32%), Postives = 141/248 (56.85%), Query Frame = 0
Query:   52 SSKPV--SYPSGKAKDETRVFVDSLFRQGDVVELPHEEQKHLRARRFRSGDKLVLFNSVGQTAASEYQNQK-VLILEVSGSGQKDHNLSHLIAIPRKPSRADWLVEKLTELGADSITFMQTNRTVVADPSPNKLHRWRRIAVSASKQSMRDSTPEILVV-DFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAICQ 295
            +++PV  SY  GKA   TRVF+   F  G    LP EE  HLRARR R G ++ LF+  G  A +   ++  V +L  + +  +  ++  +IA+P+ PSRAD +VEKL ELG   + + +T R + A P+  +L RW R+AV+ASKQSMR   P +    ++   ++  SQ  L LLLS  G P+L     +     R++  LVGPEGGF D E   L+  GA +I LG  RLR ETAA  + A + Q
Sbjct:   29 TTRPVIASYTRGKATSSTRVFLSGPFHPGAEYTLPPEEAAHLRARRIRHGSQITLFDGTGAFATATLDSESSVTVLTTTSAEARSKSICAIIALPKSPSRADGIVEKLVELGVHRLVWARTERVIAAAPNQARLARWARLAVAASKQSMRTDVPIVQTTSNWGELLELASQSDLVLLLSAAGTPILGQRCTDAVRAARNIAVLVGPEGGFTDTEEEKLEAVGALKIGLGSNRLRVETAAFTAVAVLMQ 276          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A378U1R7_NEIEL (Ribosomal RNA small subunit methyltransferase E n=13 Tax=Neisseria TaxID=482 RepID=A0A378U1R7_NEIEL)

HSP 1 Score: 117 bits (294), Expect = 6.240e-28
Identity = 79/235 (33.62%), Postives = 128/235 (54.47%), Query Frame = 0
Query:   68 RVFVDSLFRQGDVVELPHEEQKHLRARRFRSGDKLVLFNSVGQT--AASEYQNQKVLILEVSGSGQKDHNLS-HLIAIPRKPS--RADWLVEKLTELGADSITFMQTNRTVV---ADPSPNKLHRWRRIAVSASKQSMRDSTPEIL-VVDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAI 293
            R F+ +    G+ V LP +  +HL   R R G+++VLFN  G +  A     +++    E+S S   ++    H+  I    S  R D+ ++K  ELG + I  +++ R+VV    + +  ++ RW+ I +SA +QS R++ P +  ++ F  A+Q +      LL+  N      SC LN+    RSV+F+VGPEGG+ + E    Q+AG   +SLG   LRTETAA+A+ AA+
Sbjct:    3 RFFLSAALHVGETVALPGDVVRHLNVLRCRIGEEIVLFNGDGLSYHAVLNSLDKRTAEAEISSSRPSENESPLHITLIQAVSSGERMDFTLQKSVELGVNEIIPVESARSVVKLSGERAEKRVSRWQEIVISACEQSGRNTVPAVRPLLPFRRALQNLPDAEAKLLMGLNR-----SCRLNSLPPPRSVVFMVGPEGGWTEEEERLAQEAGFQAVSLGRRVLRTETAALAAIAAM 232          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A2D8PR62_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PR62_9PROT)

HSP 1 Score: 114 bits (286), Expect = 9.570e-27
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 0
Query:   82 ELPHEEQKHL-RARRFRSGDKLVLFNSVGQTAASEY----QNQKVL-ILEVSGSGQKDHNLSHLIAIPRKPSRADWLVEKLTELGADSITFMQTNRTVVAD-PSPNKLHRWRRIAVSASKQSMRDSTPEILVVDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAI 293
            +L  +E ++L +A R   G+K+ +F+  G  A +      + Q  L + E   + + DH L   +A P K  RADWLVEK+TE+GA  + ++QT R+VV   P   K  RW R+A SA++QS R   P+I       +++ +S+      L     P+ +   L     +   + ++GPEGGF DHE   L+++G N + L  + LRTETAAIA+AA +
Sbjct:   24 QLTKDESRYLLKALRLTEGEKIEVFDGQGFFALATLHRIDEGQPYLDVQEPQEAPKPDHELYLAVATP-KGDRADWLVEKITEIGASGLIWLQTERSVVTPKPGSKKFERWARLADSAARQSRRVRVPKI---QGPMSLEELSEQEFQNRLV--ASPIKTDNALPKGALQGRTVVVIGPEGGFTDHELEQLKNSGYNLLWLSPHILRTETAAIAAAAVL 236          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A2R4XIN6_9BURK (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Orrella marina TaxID=2163011 RepID=A0A2R4XIN6_9BURK)

HSP 1 Score: 115 bits (287), Expect = 9.910e-27
Identity = 76/236 (32.20%), Postives = 120/236 (50.85%), Query Frame = 0
Query:   68 RVFVDSLFRQGDVVELPHEEQKHLRARRFRSGDKLVLFNSVGQTAASEYQ--NQKVLILEVSGSGQKDHNLSHLIAIPR---KPSRADWLVEKLTELGADSITFMQTNRTVV---ADPSPNKLHRWRRIAVSASKQSMRDSTPEILVV-DFEAAIQRVSQHP-LPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAI 293
            R F D+     D +ELP +   H+R RR R G+ +VLF+  G+ A +     ++ +   ++  S      +S  I + +      + DW++EK TELG   +  +Q +R+VV   +D +  +    RR+  SAS+Q  R+   ++L+    + AI+     P L  +LS    PL S  +L    R +     +GPEGG+   E N L  AGA  ISLG   LRTETA +A+ +A+
Sbjct:    9 RFFCDTRLEHCDTIELPDDVAHHVRVRRLREGEPIVLFDGKGRQAEARISVISKSLCQAKIESSSLVSREISGKITLVQAMASQDKMDWIIEKATELGVTRMIAVQASRSVVKLNSDRASKRAAHGRRLIESASEQCGRNHLMQLLMPHSLKQAIEACKDQPMLACVLSEAALPLTSESLLETVRRHQGCSVFIGPEGGWAPDEQNELIKAGAVAISLGRRVLRTETAGLAAVSAL 244          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A7J7ILD3_9RHOD (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILD3_9RHOD)

HSP 1 Score: 115 bits (289), Expect = 1.760e-26
Identity = 88/258 (34.11%), Postives = 132/258 (51.16%), Query Frame = 0
Query:   81 VELPHEEQKHLRARRFRSGDKLVLFNSVGQTAASEY--QNQKVLIL----------EVSGSGQKDHNLSHLIAIPRKPSRADWLVEKLTELGADSITFMQTNRTVVADPSPNKLH--RWRRIAVSASKQSMRDSTPEILVVDFEAAIQRVSQ-HPLP---------------------LLLSPNGKPLLSSC------VLNNAER---ERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAI 293
            +ELP  EQ+H+R+RR + G  + LF+  G+ AA +   + + V  L          EV  S Q+  ++S ++A P+   RADW++EKL ELG      +   R  V  P   K    RW+ ++++A+KQS+R +  +  + D  A + R++   P P                     LL  P+ +  L+S       VL+ +ER    R V+ +VGPEGG    E +AL  AGA  +SLG  RLRTETAA+A AAA+
Sbjct:   58 LELPPNEQQHVRSRRLKDGTMVELFDGSGRLAAGQLACRGRAVEALRWLPTDTGATEVP-SMQQVLSVSCVVATPKSTQRADWMIEKLNELGVSGYRHLACRRVEVDAPQIEKRAAVRWQHVSIAAAKQSLRRTLLDCGLADANATVTRMAHWFPSPVVTLEDLVRQMSVTASEDVVFLLAKPDARRTLASWRRAHSPVLSPSERWTSPRQVVCVVGPEGGLSSDEEDALLQAGAIGVSLGAQRLRTETAAVALAAAL 314          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A098U8W8_9BURK (Ribosomal RNA small subunit methyltransferase E n=5 Tax=Massilia TaxID=149698 RepID=A0A098U8W8_9BURK)

HSP 1 Score: 111 bits (277), Expect = 1.940e-25
Identity = 84/231 (36.36%), Postives = 115/231 (49.78%), Query Frame = 0
Query:   78 GDVVELPHEEQKHLRARRFRSGDKLVLFNSVGQTAASEYQN--QKVLILEVSGSGQKDHNLSHLIAIPR---KPSRADWLVEKLTELGADSITFMQTNRTVV---ADPSPNKLHRWRRIAVSASKQSMRDSTPEILVVDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAICQFFYGG 300
            G VV+LP     HL   R +SGD+LVLFN  G  A +      ++    EV      D  L   + + +   + S+ DW+VEK  ELGA  +  +   R+VV    D +  +L  W+ + VSAS+Q  R+   ++  V         S     +LLSP     L+  V   A   R V  LVGPEGGF DHE +A + AGA  +S+G   LRTETA +A A AI    +GG
Sbjct:   13 GSVVDLPEAVAHHLHVVRQQSGDELVLFNGEGGQARARLVEIGKRRASAEVVALDAVDVELPFRVTLAQGLPEGSKMDWIVEKAVELGAAGVIPLAAQRSVVRLSGDRADKRLAHWQAVVVSASEQCGRNRLADVAPVQDVNRWLADSGTGTRILLSPRADASLAQWV--RATPPRDVTLLVGPEGGFTDHEEDAARAAGALALSMGPRVLRTETAGLA-ALAILAAGWGG 240          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A656D426_9BACT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Candidatus Kryptobacter tengchongensis TaxID=1643429 RepID=A0A656D426_9BACT)

HSP 1 Score: 110 bits (274), Expect = 6.900e-25
Identity = 81/242 (33.47%), Postives = 126/242 (52.07%), Query Frame = 0
Query:   70 FVDSLFRQGDVVELPHEEQKHL-RARRFRSGDKLVLFNSVGQTAASEYQN---QKV---LILEVSGSGQKDHNLSHLIAIPRKPSRADWLVEKLTELGADSITFMQTNRTVVA----DPSPNKLHRWRRIAVSASKQSMRDSTPEILV-VDFEAAIQRVSQHPLPLLL--SPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAICQFF 297
            ++D    +  VVE+  EE  HL R  R R G+ + LF+  G+   ++  N   +K    +I E    G+ D +++   AI + P R ++ +EKLTELG   I  + T R + A    D S NK+ RW++I +SA KQS R   P++   VDF++ +   +++   ++   S   K +L    L   +   S+L   GPEGGF   E     ++G + ISLG  RLR+ETA+I     + QFF
Sbjct:    5 YIDPKDIKNGVVEIKGEEFHHLARVSRKRVGELIYLFDGGGKIYTAKIVNITREKAKCEIIAEEFMKGEIDVDIAVAQAILKNPERFEFAIEKLTELGTKYIIPLITERVIPAKSLEDISRNKIERWKKIILSACKQSNRALIPKLCEPVDFKSFVTEFTEYDRKVIFHESDEFKRILLYNYLERMKGVNSILVATGPEGGFTSEEIKLAVNSGFDVISLGERRLRSETASIIGVGVLIQFF 246          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A6J1IBI6_CUCMA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1IBI6_CUCMA)

HSP 1 Score: 110 bits (275), Expect = 1.650e-24
Identity = 76/221 (34.39%), Postives = 116/221 (52.49%), Query Frame = 0
Query:   77 QGDVVELPHEEQKHL-RARRFRSGDKLVLFNSVGQTAASEYQNQKV-----LILEVSGSGQKDHNLSHLIAI--PRKPSRADWLVEKLTELGADSITFMQTNRTVVADPSPNKLHRWRRIAVSASKQSMRDSTPEI-LVVDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIA 288
            +GD++ L  +E  H+ +  R ++ D++ LFN  G       +N +V     L +E   S        H+ A     K  RADWLVEK TELGA S+T + T R   A  S N++HR+ RI ++A+KQ  R     +   +  +  +  +++  L  +      PL+S+  L + E E   L +VGPEG F + E N +++AGA  + LG YRLR ETA +A
Sbjct:   81 KGDIIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGIDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC--ATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSA--LASIETESGGLLVVGPEGDFTEKEVNMIKEAGAIAVGLGPYRLRVETATVA 297          
BLAST of Gvermi6549.t1 vs. uniprot
Match: A0A8B8MF99_ABRPR (16S rRNA (uracil(1498)-N(3))-methyltransferase n=3 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MF99_ABRPR)

HSP 1 Score: 108 bits (271), Expect = 3.630e-24
Identity = 78/235 (33.19%), Postives = 126/235 (53.62%), Query Frame = 0
Query:   77 QGDVVELPHEEQKHL-RARRFRSGDKLVLFNSVGQTAASEYQNQKVLILEVSGSGQKDHNLSHLIAIPR--------------KPSRADWLVEKLTELGADSITFMQTNRTVVADPSPNKLHRWRRIAVSASKQSMRDSTPEILV---VDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFLVGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAI 293
            +G+V+ +  +E  H+ +  R  + D++ LFN  G       QN       +  +G     L+ LI+IP               K  RADWL+EK TELGA+S+T + T R+     S +++ R  R+ ++ASKQ  R    E+++   V+ +  + R+SQ  L L+ + +  P+LS+  L   E+E   L ++GPEG F + E + + +AGA  +SLG +RLR ETA+IA  A +
Sbjct:   52 KGNVIRVKGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQN-------IDRTGLDFVALNDLISIPPQNTQLHVFAGFGTLKGGRADWLLEKCTELGANSVTPLLTERSPAI--SESRVDRLERVILAASKQCQR--LHEMVLKPPVEIDDLLHRISQSKLSLVATASATPVLSA--LMTLEKENCGLIIIGPEGDFTEKEVSMMIEAGATAVSLGPHRLRVETASIALLATV 273          
The following BLAST results are available for this feature:
BLAST of Gvermi6549.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH59_9FLOR6.330e-8050.7516S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
R7QLU6_CHOCR9.530e-5040.3216S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A378U1R7_NEIEL6.240e-2833.62Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2D8PR62_9PROT9.570e-2735.16Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2R4XIN6_9BURK9.910e-2732.20Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A7J7ILD3_9RHOD1.760e-2634.1116S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A098U8W8_9BURK1.940e-2536.36Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A656D426_9BACT6.900e-2533.47Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A6J1IBI6_CUCMA1.650e-2434.3916S rRNA (uracil(1498)-N(3))-methyltransferase n=7... [more]
A0A8B8MF99_ABRPR3.630e-2433.1916S rRNA (uracil(1498)-N(3))-methyltransferase n=3... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006700Ribosomal RNA small subunit methyltransferase EPFAMPF04452Methyltrans_RNAcoord: 81..293
e-value: 2.4E-44
score: 151.3
IPR006700Ribosomal RNA small subunit methyltransferase ETIGRFAMTIGR00046TIGR00046coord: 75..295
e-value: 1.9E-33
score: 113.7
IPR006700Ribosomal RNA small subunit methyltransferase EPANTHERPTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Ecoord: 68..293
NoneNo IPR availableGENE3D2.40.240.20coord: 66..127
e-value: 8.2E-7
score: 30.9
NoneNo IPR availableCDDcd18084RsmE-likecoord: 138..284
e-value: 8.86414E-45
score: 148.078
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 134..307
e-value: 2.4E-43
score: 149.7
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 68..114
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 138..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1305707..1306645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6549.t1Gvermi6549.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1305707..1306645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6549.t1 ID=Gvermi6549.t1|Name=Gvermi6549.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MKSEMLSYLRGKYAWNSLFTGPRWKCVEKSSISKCNLAHRHVMLMPFAMD
SSSKPVSYPSGKAKDETRVFVDSLFRQGDVVELPHEEQKHLRARRFRSGD
KLVLFNSVGQTAASEYQNQKVLILEVSGSGQKDHNLSHLIAIPRKPSRAD
WLVEKLTELGADSITFMQTNRTVVADPSPNKLHRWRRIAVSASKQSMRDS
TPEILVVDFEAAIQRVSQHPLPLLLSPNGKPLLSSCVLNNAERERSVLFL
VGPEGGFEDHETNALQDAGANRISLGGYRLRTETAAIASAAAICQFFYGG
TFQDERRKRRSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006700rRNA_ssu_MeTrfase-E
IPR029026tRNA_m1G_MTases_N
IPR015947PUA-like_sf
IPR029028Alpha/beta_knot_MTases