Gvermi6477.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6477.t1
Unique Name	Gvermi6477.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	199

Homology

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BLAST of Gvermi6477.t1 vs. uniprot
Match: A0A0D2R5V3_GOSRA (MSP domain-containing protein n=11 Tax=Gossypium TaxID=3633 RepID=A0A0D2R5V3_GOSRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.270e-9
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 0

Query:   17 ELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRFLLMVAALNSISLGPCLDAYKIT 122
            EL+S+ P+ L F   L +Q    L L N   S +A+++K TN  +YCV P+  V+ PA    + +  QA K  P D+ QC D+FLL      S+   P   A  IT
Sbjct:    5 ELLSIDPQELQFPFELRKQISCSLNLSNKTHSYVAFKVKTTNPEKYCVRPNTGVVLPASTGNVIVTMQAQKEAPPDM-QCKDKFLLQ-----SVVASPGTAAKDIT 104

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BLAST of Gvermi6477.t1 vs. uniprot
Match: A0A5D2WY80_GOSMU (MSP domain-containing protein n=14 Tax=Gossypium TaxID=3633 RepID=A0A5D2WY80_GOSMU)

HSP 1 Score: 64.3 bits (155), Expect = 4.450e-9
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 0

Query:   17 ELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRFLLMVAALN 108
            EL+S  P  L F   L +Q    L L N   + +A+++K TN N+YCV P+  V+ P     + +  QA K  P D+ QC D+FLL    +N
Sbjct:    5 ELLSSEPSELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPNKYCVRPNTGVVLPRSTCDVIVTMQAQKEAPPDM-QCRDKFLLQSVKVN 95

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BLAST of Gvermi6477.t1 vs. uniprot
Match: VAP31_ARATH (Vesicle-associated protein 3-1 n=4 Tax=Arabidopsis thaliana TaxID=3702 RepID=VAP31_ARATH)

HSP 1 Score: 62.0 bits (149), Expect = 7.860e-9
Identity = 32/107 (29.91%), Postives = 57/107 (53.27%), Query Frame = 0

Query:   16 DELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRFLLMVAALNSISLGPCLDAYKIT 122
            +EL+ + P +L F   L +Q    L+L N   + +A+++K TN N YCV P+  ++ P     + +  QA K VP D+ Q  ++F++      S+   P + A ++T
Sbjct:    4 NELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKSTCKVLVTMQAQKEVPSDM-QSFEKFMIQ-----SVLASPGVTAKEVT 104

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BLAST of Gvermi6477.t1 vs. uniprot
Match: UPI001C267748 (vesicle-associated protein 1-1-like n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C267748)

HSP 1 Score: 63.5 bits (153), Expect = 8.460e-9
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 0

Query:   17 ELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRFLLMVAALNSISLGPCLDAYKIT 122
            EL+ + P  L F   L +Q    + + N   + +A+++K TN N+YCV P+  V+ P     + +  QA K  P D+ QC D+FLL      S+ + P   A  IT
Sbjct:    5 ELLQIEPLELQFPFELKKQISCSMRMSNKTDNFVAFKVKTTNPNKYCVRPNTGVVSPLSACDVIVTMQAQKEAPPDM-QCRDKFLLQ-----SVVVSPGSSAKDIT 104

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BLAST of Gvermi6477.t1 vs. uniprot
Match: A0A0D2PCY5_GOSRA (MSP domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A0D2PCY5_GOSRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.840e-9
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 0

Query:   17 ELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQR-IAIEIDQQAFKTVPEDIEQCSDRFLLMVAALNSISLGPCLDAYKIT 122
            EL+S+ P+ L F   L +Q    L L N   S +A+++K TN  +YCV P+  V+ PA     I +  QA K  P D+ QC D+FLL      S+   P   A  IT
Sbjct:    5 ELLSIDPQELQFPFELRKQISCSLNLSNKTHSYVAFKVKTTNPEKYCVRPNTGVVLPASTGNVIAVTMQAQKEAPPDM-QCKDKFLLQ-----SVVASPGTAAKDIT 105

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BLAST of Gvermi6477.t1 vs. uniprot
Match: A0A2R6R9A1_ACTCC (Vesicle-associated protein 1-2, N-terminally processed like n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6R9A1_ACTCC)

HSP 1 Score: 63.2 bits (152), Expect = 1.170e-8
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 0

Query:   17 ELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRFLLMVA 105
            +L+++ P+ L F   L +Q    L L N     +A+++K TN N+YCV P+  V+ P     + +  QA K  P D+ QC D+FLL  A
Sbjct:    5 DLLNLEPQELQFPFELKKQISCSLQLSNKTDKYVAFKVKTTNPNKYCVRPNTGVVLPLSTCDVIVTMQAQKEAPPDM-QCKDKFLLQSA 92

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BLAST of Gvermi6477.t1 vs. uniprot
Match: UPI0012F4C0CC (vesicle-associated protein 1-3-like n=1 Tax=Cucumis sativus TaxID=3659 RepID=UPI0012F4C0CC)

HSP 1 Score: 56.2 bits (134), Expect = 2.420e-6
Identity = 27/86 (31.40%), Postives = 46/86 (53.49%), Query Frame = 0

Query:   17 ELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPIAYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRFLL 102
            +L+ V P+ L F   + +Q+   + L N     +A+++K TN  +YCV P+  V+ P     +    QA K  P D++ C D+FL+
Sbjct:    4 QLLEVHPKELKFIFEVRKQSSCSIQLTNNELHYVAFKVKTTNAQKYCVRPNKGVINPLSNCEVTFTMQAQKMAPPDMK-CKDKFLI 88

The following BLAST results are available for this feature:

BLAST of Gvermi6477.t1 vs. uniprot

BLAST of Gvermi6477.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7


Match Name	E-value	Identity	Description
A0A0D2R5V3_GOSRA	1.270e-9	36.79	MSP domain-containing protein n=11 Tax=Gossypium T...	[more]
A0A5D2WY80_GOSMU	4.450e-9	36.96	MSP domain-containing protein n=14 Tax=Gossypium T...	[more]
VAP31_ARATH	7.860e-9	29.91	Vesicle-associated protein 3-1 n=4 Tax=Arabidopsis...	[more]
UPI001C267748	8.460e-9	33.02	vesicle-associated protein 1-1-like n=2 Tax=Salvia...	[more]
A0A0D2PCY5_GOSRA	8.840e-9	37.38	MSP domain-containing protein n=4 Tax=Gossypium Ta...	[more]
A0A2R6R9A1_ACTCC	1.170e-8	35.96	Vesicle-associated protein 1-2, N-terminally proce...	[more]
UPI0012F4C0CC	2.420e-6	31.40	vesicle-associated protein 1-3-like n=1 Tax=Cucumi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 12..153 e-value: 5.2E-18 score: 67.1
IPR000535	Major sperm protein (MSP) domain	PFAM	PF00635	Motile_Sperm	coord: 19..107 e-value: 1.8E-11 score: 43.8
IPR000535	Major sperm protein (MSP) domain	PROSITE	PS50202	MSP	coord: 18..152 score: 16.810589
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..183
None	No IPR available	PANTHER	PTHR10809:SF6	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN A	coord: 15..168
IPR016763	Vesicle-associated membrane-protein-associated protein	PANTHER	PTHR10809	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	coord: 15..168
IPR008962	PapD-like superfamily	SUPERFAMILY	49354	PapD-like	coord: 11..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:977522..978118 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6477.t1	Gvermi6477.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_88 977522..978118 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6477.t1 ID=Gvermi6477.t1|Name=Gvermi6477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MGALLARDIGSPSTMDELVSVSPRHLTFQIVLNRQTGAFLFLKNVFSSPI
AYEIKPTNLNRYCVSPHAFVLQPAQRIAIEIDQQAFKTVPEDIEQCSDRF
LLMVAALNSISLGPCLDAYKITNFHGYESFMDLWSVVPEDKIFKKEMTVS
LQMLHDAEPSGSNLVPISSGKLPATQSDSPAEMHQLVDETPTEITPLL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR000535	MSP_dom
IPR016763	VAP
IPR008962	PapD-like_sf