Gvermi6374.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6374.t1
Unique NameGvermi6374.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length388
Homology
BLAST of Gvermi6374.t1 vs. uniprot
Match: A0A2V3IT25_9FLOR (THUMP domain-containing protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT25_9FLOR)

HSP 1 Score: 232 bits (592), Expect = 8.500e-69
Identity = 114/165 (69.09%), Postives = 136/165 (82.42%), Query Frame = 0
Query:    1 MADVKGAVFLRVNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACPSKPTEGKQEV 165
            +ADVKG VFLRVND+S DLEH+VE AL EARE+G+AGSRHC+RV+P++GTCYA+ E A + A+ VVK  FP +     VSYAIV+R+RLNNS KR+ FI  IA AI++YEPRYKVNLT PDVVLIVEVLK SCCIG FRKYY+LAK+NLRE ACPSKP E ++ V
Sbjct:  152 IADVKGTVFLRVNDKSVDLEHIVESALIEARESGSAGSRHCVRVIPVFGTCYARAEVAAATAVKVVKQRFPHISPGVDVSYAIVYRSRLNNSVKRDDFIKLIADAIYKYEPRYKVNLTKPDVVLIVEVLKGSCCIGVFRKYYQLAKLNLREVACPSKPKEERKGV 316          
BLAST of Gvermi6374.t1 vs. uniprot
Match: R7Q191_CHOCR (THUMP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q191_CHOCR)

HSP 1 Score: 208 bits (530), Expect = 1.560e-59
Identity = 105/161 (65.22%), Postives = 125/161 (77.64%), Query Frame = 0
Query:    4 VKGAVFLRVNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGA-VSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACPSKPTEGKQ 163
            V G +F+++N    DLE+VVE AL++AR +G+  SRHCIR++PI+ TCYAK E A  AA+ +VK HFP +   G  VSYAI FR+RLN SA RE FI  IA AI E EPRYKVNLT+PDV LIVEV+KTSCCIGTFR YY+LAKMNLREAACPSKP E K+
Sbjct:  163 VNGCIFIQINRPHVDLENVVECALKDARASGSPNSRHCIRIMPIHSTCYAKPEDAAKAAVEIVKKHFPPMVAEGKPVSYAISFRSRLNTSAHREEFIKVIAKAIEECEPRYKVNLTSPDVTLIVEVMKTSCCIGTFRHYYQLAKMNLREAACPSKPKEEKE 323          
BLAST of Gvermi6374.t1 vs. uniprot
Match: UPI000C1D03AD (THUMP domain-containing protein 1 homolog isoform X1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D03AD)

HSP 1 Score: 94.4 bits (233), Expect = 9.260e-18
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 0
Query:    6 GAVFLRVNDQSADL--EHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLRE 151
            G VF+++  +  D   + +V+H +     T    SR  +RVLPI  TCYA  E    A   V++  FP VE    + +A+++ AR N    R   IDA+A ++      +KV+L+ PDV ++V+++KT C IG   KY ELAK N+RE
Sbjct:  231 GVVFVQMRKRDGDPSPKDIVQHMMTSLASTRKHVSRFLLRVLPIEITCYASDEEIRRAIKPVIEQFFP-VETQNPLKFAVLYDARANTGVDRTKIIDAVAKSVPS---AHKVDLSNPDVSIVVQIVKTMCLIGIVEKYKELAKYNIRE 374          
BLAST of Gvermi6374.t1 vs. uniprot
Match: D7SNG3_VITVI (THUMP domain-containing protein n=3 Tax=Vitis TaxID=3603 RepID=D7SNG3_VITVI)

HSP 1 Score: 94.4 bits (233), Expect = 1.050e-17
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 0
Query:    6 GAVFLRVNDQSADL--EHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACP 155
            G VF+++  +  D   + +V+H +  A  T    SR  +RVLP+  TCYA  E  + A   +V+ +FP VE      +A+++ AR N    R   I+++A ++      +KV+L+ PD+ ++V+++KT C IG   KY ELAK NLR+   P
Sbjct:  244 GVVFVQMRKKDGDPSPKEIVQHMMTSAASTRKHMSRFILRVLPVEATCYASEEEISIAIKPLVEQYFP-VETQNPKKFAVLYEARSNTGIDRMKIINSVAKSV---PGPHKVDLSNPDMTIVVQIVKTVCLIGFLEKYKELAKYNLRQLTSP 391          
BLAST of Gvermi6374.t1 vs. uniprot
Match: A0A6P5ZI01_DURZI (THUMP domain-containing protein 1 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZI01_DURZI)

HSP 1 Score: 94.0 bits (232), Expect = 1.260e-17
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 0
Query:    6 GAVFLRVNDQSADL--EHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACP 155
            G VF+++  +  D   + +V+H +  A  T    SR  +RVLP+   CYA  E  T A   ++  +FP VE      +A+++ AR N+   R   I+++A +I      +KV+L+ PD+ ++VE++KT C IG   KY ELAK NLR+   P
Sbjct:  230 GVVFVQMRKRDGDPGPKDIVQHMMTSAASTRKHMSRFILRVLPVEVACYASEEEITIAMKPLIVQYFP-VETQNPKKFAVLYEARANSGIDRMKIINSVAKSI---PAPHKVDLSNPDMTIVVEIVKTVCLIGVVEKYKELAKYNLRQLTSP 377          
BLAST of Gvermi6374.t1 vs. uniprot
Match: A0A4W4H0H1_ELEEL (THUMP domain-containing protein n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4H0H1_ELEEL)

HSP 1 Score: 92.4 bits (228), Expect = 2.030e-17
Identity = 55/155 (35.48%), Postives = 86/155 (55.48%), Query Frame = 0
Query:   12 VNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACPSKPTE-GKQEV 165
            ++  + D E +V H L++ RET    SR  +R+LP+ GTC A  +       + ++  F S   P   SY I F++R N+ + R+  I A+A  + +  P+ KV+LT P++ +IVE++KT CC+   R Y    K NL+E    S   E G+QEV
Sbjct:  116 IHTHNIDPEKLVHHILQDLRETKKKKSRVIMRMLPVCGTCRAFPDDMEKFMSSFLEPWFKS---PQQASYQISFKSRNNSHSNRDDVIKALAGLVGKMNPKNKVDLTNPELTIIVEIIKTVCCVSVVRDYMLFRKYNLQEVTKGSPNQEQGQQEV 267          
BLAST of Gvermi6374.t1 vs. uniprot
Match: UPI000C1CE09F (THUMP domain-containing protein 1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE09F)

HSP 1 Score: 93.2 bits (230), Expect = 2.300e-17
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = 0
Query:    6 GAVFLRVNDQSADL--EHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLRE 151
            G VF+++  +  D   + +V+H +     T    SR  +RVLPI  TCYA  E    A   V++  FP +E    + +A+++ AR N    R   IDA+A ++      +KV+L+ PDV ++V+++KT C IG   KY ELAK N+RE
Sbjct:  230 GVVFVQMRKRDGDPCPKDIVQHMMTSLASTRKHVSRFLLRVLPIEITCYASDEEIRRAIKPVIEQFFP-IETQNPLKFAVLYDARANTGVDRTKIIDAVAKSVPS---AHKVDLSNPDVSIVVQIVKTICLIGIVEKYKELAKYNVRE 373          
BLAST of Gvermi6374.t1 vs. uniprot
Match: A0A7J7QB30_9CHLO (THUMP domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QB30_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 3.830e-17
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 0
Query:    4 VKGAVFLR--VNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAA 153
            V+G +F+     D     E VV    R+ + T +  SRH +R+LP+  TC    E  T+ A  V + +FP+ E   +  +A+ F  R ++   R   ID +A A+ +  P +KVNL TP   ++V++++T CCI     Y ELA+ N+R+ A
Sbjct:  122 VRGTLFVEFPAEDDCPSPEEVVLDICRQVQATQSLPSRHLMRLLPVSHTCGINKEEITALAAKVAEKYFPTGEGAASTEFAVEFEHRASDKLDRREVIDIVAKAVQQ--PPHKVNLKTPQKTILVQLVRTVCCISVLDSYKELARFNVRKLA 271          
BLAST of Gvermi6374.t1 vs. uniprot
Match: A0A1R3KVY3_COCAP (THUMP domain-containing protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3KVY3_COCAP)

HSP 1 Score: 92.4 bits (228), Expect = 4.240e-17
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 0
Query:    8 VFLRVNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACP 155
            V +R  D     + +V+H +  A  T    SR  +RVLP+   CYA  E  T A   +++ +FP VE      +A+++ AR N+   R   I+++A +I      +KV+L+ PD+ ++VE++KT C IG   KY EL+K NLR+   P
Sbjct:  234 VQMRKRDGDPGPKEIVQHMMTSAASTRKHMSRFILRVLPVELACYASEEEITRAMKPLIEQYFP-VETENPRKFAVLYEARANSGIDRMKIINSVAKSI---PAPHKVDLSNPDMTIVVEIVKTVCLIGVVEKYKELSKYNLRQLTSP 377          
BLAST of Gvermi6374.t1 vs. uniprot
Match: A0A0D2NRD3_GOSRA (THUMP domain-containing protein n=24 Tax=Gossypium TaxID=3633 RepID=A0A0D2NRD3_GOSRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.290e-17
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 0
Query:    6 GAVF--LRVNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGTCYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFIDAIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLREAACP 155
            G VF  +R  D     + +V+H +  A  T    SR  +RVLP+   CY+  E  T A   +++ +FP VE      +A+++ AR N+   R   I+++A ++      +KV+L+ PD+ ++VE++KT C IG   KY ELAK NLR+   P
Sbjct:  230 GVVFVQMRKRDGVPSPKDIVQHMMTSAASTRKHMSRFILRVLPVEVACYSSEEEITRAMKPLIEQYFP-VETQNPRKFAVLYEARANSGIDRMKIINSVAKSV---PAPHKVDLSNPDMTIVVEIVKTICLIGVVEKYKELAKYNLRQLTSP 377          
The following BLAST results are available for this feature:
BLAST of Gvermi6374.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IT25_9FLOR8.500e-6969.09THUMP domain-containing protein 1 n=1 Tax=Gracilar... [more]
R7Q191_CHOCR1.560e-5965.22THUMP domain-containing protein n=1 Tax=Chondrus c... [more]
UPI000C1D03AD9.260e-1837.16THUMP domain-containing protein 1 homolog isoform ... [more]
D7SNG3_VITVI1.050e-1734.87THUMP domain-containing protein n=3 Tax=Vitis TaxI... [more]
A0A6P5ZI01_DURZI1.260e-1735.53THUMP domain-containing protein 1 n=1 Tax=Durio zi... [more]
A0A4W4H0H1_ELEEL2.030e-1735.48THUMP domain-containing protein n=2 Tax=Electropho... [more]
UPI000C1CE09F2.300e-1736.49THUMP domain-containing protein 1-like n=1 Tax=Ole... [more]
A0A7J7QB30_9CHLO3.830e-1733.55THUMP domain-containing protein n=1 Tax=Scenedesmu... [more]
A0A1R3KVY3_COCAP4.240e-1735.14THUMP domain-containing protein n=2 Tax=Corchorus ... [more]
A0A0D2NRD3_GOSRA4.290e-1734.87THUMP domain-containing protein n=24 Tax=Gossypium... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 253..298
NoneNo IPR availableGENE3D3.30.2300.10THUMP superfamilycoord: 52..139
e-value: 5.7E-20
score: 73.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 360..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..185
NoneNo IPR availableSUPERFAMILY143437THUMP domain-likecoord: 55..136
IPR004114THUMP domainSMARTSM00981THUMP_a_2coord: 43..139
e-value: 6.7E-7
score: 38.9
IPR004114THUMP domainPFAMPF02926THUMPcoord: 31..137
e-value: 2.8E-10
score: 40.5
IPR004114THUMP domainPROSITEPS51165THUMPcoord: 21..139
score: 12.614238
IPR040183THUMP domain-containing protein 1-likePANTHERPTHR13452THUMP DOMAIN CONTAINING PROTEIN 1-RELATEDcoord: 4..162
IPR040183THUMP domain-containing protein 1-likeCDDcd11717THUMP_THUMPD1_likecoord: 3..136
e-value: 7.09256E-24
score: 94.5726

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:368622..369785 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6374.t1Gvermi6374.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 368622..369785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6374.t1 ID=Gvermi6374.t1|Name=Gvermi6374.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=388bp
MADVKGAVFLRVNDQSADLEHVVEHALREARETGNAGSRHCIRVLPIYGT
CYAKVETATSAALTVVKAHFPSVERPGAVSYAIVFRARLNNSAKREAFID
AIAAAIHEYEPRYKVNLTTPDVVLIVEVLKTSCCIGTFRKYYELAKMNLR
EAACPSKPTEGKQEVANRAQGGEEESGATKAVGGESCDKIADNVGDDGAG
AMSDKVAEQVSQGVEDADLATGRRDVKGSVNEETVDGDEAKAVEAKAVEA
KAVEAKAVEAKAAEAKAAEAKAAEAKAAEAKTAEAKTAEAKAANAAHRDQ
AKAAEALGGDEAKTTRAKGARGDALEAVGRDGAKAAEAKTVALKAAEAKT
VALKAAEAKGAEAVDGDQTKCAEARDGDHVNGAQAKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP_dom
IPR040183THUMPD1-like