Gvermi6367.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6367.t1
Unique NameGvermi6367.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length661
Homology
BLAST of Gvermi6367.t1 vs. uniprot
Match: A0A2V3IS04_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS04_9FLOR)

HSP 1 Score: 257 bits (656), Expect = 7.950e-74
Identity = 343/481 (71.31%), Postives = 384/481 (79.83%), Query Frame = 0
Query:  174 ILHAIQEGTPSEKHEVMQLIREGSKVLTVHEFNDIIMSLARQKRYNEALDLATLAERRPLKDLITKSKSAKTYTILIDLYGRAQELDRAMSVFRSMARKGIQPNIVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEARHWGFQKLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRRYRQCSRVKELWDTIVRYNLKPSRLYYPGLIGMAVSAGELQIACAIVLHAYARGSLWRVSLNSDVPGLQAMACALIYLRHELKVSGGNNA-QEYRRMAERLHVVFESVAMTSEEMDNMPPSEARDFCVSWGDPGAENDGHPTHRQRPLTRGRI 653
            I   +  GT ++++E+MQL+REG  +L++HEFN+++  L RQKR +EAL +  L E +PL DLIT SKS KTYTILIDLYG+ Q L+RA S+F  M RKG+QPN++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E RHWG+ +  XXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXX CRR+RQCSRV+ LWD IV+YN+KPSR+YYPGLI MAVS GELQIACAIVLHAYARG L RV+LNS+ P L AMACAL+YLRHEL+V+    A QE R+  ERL VVF SVAMT E+MD+M    A ++ +SWGD     D  P HRQR   R +I
Sbjct:   40 ISAVLINGTQAQRNEIMQLLREGQTLLSIHEFNEVVSCLIRQKRLSEALSVVELTEHKPLSDLITISKSVKTYTILIDLYGKTQNLERAFSIFYGMFRKGVQPNVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRHWGYTRXXXXXXXXXXXXXXXXXXXXKAELVLKNMVRNRVKXXXXXXXXXXXXXXXXXXXXXXFEVLNRMESKHXXXXXXXXXXXXXXACRRHRQCSRVRALWDVIVKYNIKPSRMYYPGLIAMAVSQGELQIACAIVLHAYARGHLRRVALNSENPALHAMACALVYLRHELRVANSEKATQETRKREERLRVVFGSVAMTVEQMDSMTSLAACEYALSWGDIELGEDDFPAHRQRVSNRNKI 520          
BLAST of Gvermi6367.t1 vs. uniprot
Match: R7Q1B3_CHOCR (PPR_long domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1B3_CHOCR)

HSP 1 Score: 137 bits (345), Expect = 3.330e-30
Identity = 242/453 (53.42%), Postives = 294/453 (64.90%), Query Frame = 0
Query:  178 IQEGTPSEKHEVMQLIREGSKVLTVHEFNDIIMSLARQKRYNEALDLATLAERRPLKDLITKSKSAKTYTILIDLYGRAQELDRAMSVFRSMARKGIQPNIVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEARHWGFQKLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRRYRQCSRVKELWDTIVRYNLKPSRLYYPGLIGMAVSAGELQIACAIVLHAYARGSLWRVSLNSDVPGLQAMACALIYLRHELKVSGGNNAQEYRRMAERLHVVFESVAMTSEEMDNMPPSEARDFCVSW 630
            +  G   E+   M  +  G+  L++ +FN+I+ ++ R +R  +A     L +R P   ++ K K+ K+YTI+ID YG+  +L RA ++F +M R G +PN+VT   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +HWGF + NXXXXXXXXXXXXXXXXXXXX                                                              RR  +  R K +W  +++YN++PSR YYP LI MA  +G+L +A AI LHAYARGSL RV+LNS+ P L AMACA+ YL H ++    ++ +  ++   RL VVF S AM  +++  + P  A   C SW
Sbjct:  181 LLRGNDRERRRFMTELHAGNAKLSIEQFNEILSAMLRMRRVRDAAAFTQLWDREPWLSILRKDKATKSYTIMIDAYGKCNQLARAFTLFYTMTRVGPKPNVVTFNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHWGFPRANXXXXXXXXXXXXXXXXXXXXERVMANMVANGIRPNEISFGALMDGWTKGGQINRAFEIIERMVNVHDVLPNAVLVGGLIDASRRLNEPGRAKPIWSVVMKYNIRPSRTYYPPLIAMAARSGDLDVASAITLHAYARGSLRRVALNSENPTLYAMACAIAYLLHSIRTDTKSSQEVKKQHLNRLRVVFNSTAMRPDQLTRLSPEAAYQCCTSW 633          
The following BLAST results are available for this feature:
BLAST of Gvermi6367.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IS04_9FLOR7.950e-7471.31Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7Q1B3_CHOCR3.330e-3053.42PPR_long domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 245..274
e-value: 9.7E-6
score: 25.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 245..278
e-value: 1.8E-8
score: 32.0
coord: 455..489
e-value: 2.9E-6
score: 25.1
coord: 420..453
e-value: 1.3E-8
score: 32.5
coord: 350..379
e-value: 3.0E-6
score: 25.0
coord: 314..346
e-value: 1.1E-4
score: 20.1
coord: 279..312
e-value: 3.9E-10
score: 37.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 276..321
e-value: 8.0E-15
score: 54.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 453..488
score: 10.117337
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 312..346
score: 10.775016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 347..381
score: 12.134216
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 382..416
score: 8.648523
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 277..311
score: 13.307076
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 242..276
score: 12.189023
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 418..452
score: 12.123256
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 465..564
e-value: 2.8E-9
score: 38.5
coord: 173..325
e-value: 4.5E-32
score: 112.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 326..448
e-value: 6.7E-33
score: 116.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 241..479
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 355..516
e-value: 5.6E-15
score: 55.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 646..660
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 630..660
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..183
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 188..410
coord: 351..547
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 526..549
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 550..660
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..525

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:347704..349686 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6367.t1Gvermi6367.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 347704..349686 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6367.t1 ID=Gvermi6367.t1|Name=Gvermi6367.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=661bp
MPSRLHLQQGVQPYITHGQQSWAWLGSSTSSFQSYISVCDLQPKSVSLRR
GTPAYVKYIRNDSTTSPLVTGRKDLKQPIKAIDRQKTSLESGETPDIRSS
DGVTDGTKNTLKRNGNAPSSNSFRERFRSTQAKQHTNGSPSADRNSRRRQ
IAEPNSSQTGSGSVENGVSGEQNILHAIQEGTPSEKHEVMQLIREGSKVL
TVHEFNDIIMSLARQKRYNEALDLATLAERRPLKDLITKSKSAKTYTILI
DLYGRAQELDRAMSVFRSMARKGIQPNIVTYNAMIAACSRNREPGLAHEV
YEEMQENGLRPDKFTYGTLIDLSAKSGDIERAFELSQQMLENGVRKDQTI
YSALMEACGRGGQPNRAFEVFENMKKDGVWPNLVVFSVLIDICATARDPE
RAFNIFAEARHWGFQKLNVVVYTALIDACAKGGCPDRAELVLKSMIEDGV
KPNHITFGTLIDGWARKGEFDKAFEVFTRMEVEHEVKPTPILIGGLIDAC
RRYRQCSRVKELWDTIVRYNLKPSRLYYPGLIGMAVSAGELQIACAIVLH
AYARGSLWRVSLNSDVPGLQAMACALIYLRHELKVSGGNNAQEYRRMAER
LHVVFESVAMTSEEMDNMPPSEARDFCVSWGDPGAENDGHPTHRQRPLTR
GRINTRRSGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long