Gvermi6340.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6340.t1
Unique NameGvermi6340.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length625
Homology
BLAST of Gvermi6340.t1 vs. uniprot
Match: R7Q4I0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4I0_CHOCR)

HSP 1 Score: 212 bits (539), Expect = 1.980e-57
Identity = 129/349 (36.96%), Postives = 190/349 (54.44%), Query Frame = 0
Query:  168 ISLIDSFGRLRVYSASQGGPMFNAIRMSLGVFGVIYDVSFCLDKLRRYVKVRTSF-HLHRALFARGAAPLQRKLRDGVAVEVVWSPFNSYNLRKRWRAEDDLVWLRVLKRAHSMKSEQLD-VCYAVPTISQWLSRNAKSLAKGGYGGFHERHTPAYQRAAFVDTAWKLDGHRLTTSLRHAVHHMQMEHSA----MSEVSVCIPLNR-EGDWQALSRAWFQAVAIVESKAAESEYPLNGGLRVRFARGSSALLAPNRGK----CCAMLSASSTRGTRGWSAFAGEVVAKWMAIPGARWAFSRDSAWLIGKEVVRGGFGDQLRLFRALYESSAADDYGMFVDEVLGDVLQL 505
            +S++D+ GRLRVYS      +F A++++ G+FGV+YDV+  +D+  R VKV   F  +   L  R    ++  ++ GVAV+++W PFNS      W  E DLVW+R L+R    + E  + V Y   TI QW   +  +LA+GG   +  R   A+    F ++ WKL+      ++  AV   Q + SA    +  V V +P++   G+W+ +   W      V+S     EYPLN G+R+ F + S ALLA N GK      A++   S  GTRGW AFA EVVA+WM +PGAR   SRD A +   +VV    G+ L  F+ L  + A DD GMF++E L  +L +
Sbjct:    1 MSVVDAHGRLRVYSRRDPPGLFEAVKVAHGLFGVLYDVTLAVDRYPRVVKVENRFVPMGGVLAGRVLQVMKGLVQRGVAVQMMWVPFNSAG-EGAWGPEGDLVWMRTLERVVGGRVEDDEAVAYRFYTIPQWFRMHGAALAQGGVAEYEPRMAKAFLARGFRESMWKLEAKPFRQNVADAV---QFQDSAEGWPVMAVEVAVPVDEGNGNWEVVRELWRVVTEKVQSADRRGEYPLNVGVRMTFVKASDALLAANFGKGRNAYSAVVQICSALGTRGWEAFAREVVAEWMRLPGARCRLSRDMAKICDADVVAKSLGESLEEFKRLRRNEAVDDIGMFLNEPLAQLLGM 345          
BLAST of Gvermi6340.t1 vs. uniprot
Match: A0A1X7VHZ6_AMPQE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VHZ6_AMPQE)

HSP 1 Score: 73.2 bits (178), Expect = 7.530e-10
Identity = 93/408 (22.79%), Postives = 170/408 (41.67%), Query Frame = 0
Query:  144 GGAIATGLLGGCATDSLFADSCVQISLIDSFGRLRVY-----SASQGGPMFNAIRMSLGVFGVIYDVSFCLDKLRRYVKVRTSFHLHRALFARGAAPLQRKLRDGVAVEVVWSPFNSYNL----------RKRWRAEDDLVWLRVLKRAHSMKSEQLDVCYAVPTISQWLSRNAKSLAKGGYGGFHERHTPAY--QRAAFVDTAWKLDGHRLTT--SLRHAVH-HMQMEHSAMSEVSVCIPLNREG-DWQALSRAWFQAVAIVESKAAE-------SEYPLNGGLRVRFARGSSALLAPNRGKC---------CAMLSASSTRGTRGWSAFAGEVVAKWMAIPGAR-----WAFSRDSAWLIGKEVVRGGFGDQLRLFRALYE---SSAADD-YGMFVDEVLGDVLQL 505
            GG + TG  G     S+ +D   Q+ ++D  G ++ Y       S      N IRMS+GVFG + +++  ++KL+   KV T++    +L    +  L R ++D  ++E++W PF S  L             W+ + D VW+R + R  S   E   +      I   +                +  TPA      +F+    K++    TT   + +A+H H  +      ++    P+N +  D Q  S  +  A+  V  K+ E        ++PL+  + +R    S  L++P   +            +L  ++  GT+ +  F  EV  KWM + GA      W F  +    +  + V   +G  L  +R + +   SSA ++ + +F++  L  +L +
Sbjct:  195 GGIMPTGCHGVGKDQSILSDLVTQVKIVDCSGEVKTYPDDLPEGSNKEAAMNGIRMSMGVFGAVVEMTIKVEKLKT-AKVDTTYPTIGSLLYGDSPTLPRLIQDNWSLEILWFPFTSLGLDGGILQGLPLMDTWQPKLDEVWVRAINRDESF-CEVNKIDRTKQKIRDTMQHQINGSVANPIIDRFKTLTPAIISNAVSFI----KMENPPGTTYEPMTNAIHFHFGISLGPFYDMEFGFPINLDNLDDQYFSN-FMTAMRFVVDKSKEYSAKGEMDQFPLSTTMVLRVISKSDCLISPASRRLNDSTTHTAWVEILCFTAITGTQNYQTFFQEVGQKWMELGGAPHWCKLWTFLENGEKNV-YDHVHEFYGKNLSDYREILKEHCSSAKEELHEIFMNSTLKKILNV 594          
BLAST of Gvermi6340.t1 vs. uniprot
Match: A0A397JT63_9GLOM (D-arabinono-1,4-lactone oxidase n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JT63_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 1.360e-7
Identity = 84/401 (20.95%), Postives = 162/401 (40.40%), Query Frame = 0
Query:  113 MLTAQSGALLSHIFAAYEMPTQAPVGQVRSVG-------GAIATGLLGGCATDSLFADSCVQISLIDSFGRLRVYSASQGGPMFNAIRMSLGVFGVIYDVSFCLDKLRRYVKVRTSFHLHRALFARGAAPLQRKLRDGVAVEVVWSPFNSYNLRKRWRAED--DLVWLRVLKRAH---SMKSEQLDVCYAVPTISQWLSRNAKSLAKGGYGGFHERHTPAYQRAAFVDTAWKLDGHRLTTSLRHAVHHMQMEHSAMSEVSVCIPLNR-------EGDWQALSRAWFQAVAIVESKAAESEYPLNGGLRVRFARGSSALLAPN----RGKCCAMLSASSTRGTRGWSAFAGEVVAKWMAIPGARWAFSRDSAWLIG-KEVVRGGFGDQLRLFRALYESSAAD 489
            ++TA++GAL++ I  A  +    P+    S G       G +A G  G   T SL +D  V + ++ + G++  +  +       A R++LG+FG+IY V+F  + +     +R +  L  A        +++      ++++ + PFNS++       +   D +W++   R+    +M  E+     A   +S   ++    L           +TP    A + +    L           A+H++       S +S  IPLN        + D+      +   +  + + AA++ +P N     R  R S ALLAPN           +  +S   T G+  FA     KW+    A+  ++++  ++   K  +   +  Q+  F  + E    D
Sbjct:  132 VVTAEAGALINEIDYALRI-NNPPLTLSSSTGSDFFGAAGVVAVGAHGAKTTLSLMSDQVVSMKIVSADGKVHEFCETTNALEMEAARVNLGLFGIIYSVTFRTEPM---FNLRMTDTLPLAKDFLIPPVVKQMFESSDSLQIFYWPFNSFDSEASQPLDPTKDKMWIKQCVRSDEKPTMSPEEFAAVRAFQNLSSLQAKYQYQLILES-----PENTPVICSALWREGPG-LSPDSYVLQAPDAIHYL-------SSLSKNIPLNLFAFGFKVDPDFSNFVEEFQAIINAIYAAAAQNSFPFNSAAEARIIRSSHALLAPNFDSDPNAIYCFIDLTSYHFTPGFQTFASSFGQKWIQNYNAKPHWAKEWEYVPNIKSYLSKAYKKQIETFEKIREKYDPD 515          
BLAST of Gvermi6340.t1 vs. uniprot
Match: A0A397W9N7_9GLOM (D-arabinono-1,4-lactone oxidase n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397W9N7_9GLOM)

HSP 1 Score: 61.2 bits (147), Expect = 3.540e-6
Identity = 72/315 (22.86%), Postives = 134/315 (42.54%), Query Frame = 0
Query:  145 GAIATGLLGGCATDSLFADSCVQISLIDSFGRLRVYSASQGGPMFNAIRMSLGVFGVIYDVSFCLDKLRRYVKVRTSFHLHRALFARGAAPLQRKLRDGVAVEVVWSPFNSYNLRKRWRAEDDLVWLRVLKRAHSMKSE-QLDVCYAVPTISQWLSRNAKSLAKGGYGGFHERHTPAYQRAA-FVDTAWKLDG--HRLTTSLR--HAVHHMQ-MEHSAMSEVSVCIPLNREGDWQALSRAWFQAVAIVESKAAESEYPLNGGLRVRFARGSSALLA------PNRGKCCAMLSASSTRGTRGWSAFAGEVVAKWM 446
            G ++TG  G    +S   +  +   ++ + G LR +S        NA R+S G+ G+IY ++F ++ +  + K++ SF      +      L+  + +  +VE+ + PFN+  L ++    +D +W++  KR     +E Q++V       S  L           +G    +H   Y  +  F+       G  H     L+   A+H+   ++H    ++     +N   D+  +       V  +   AA+ +YPLN     R  + S  LLA      P+   C  +L   S  GT+G+  F+ E+  +WM
Sbjct:  138 GIVSTGSHGAKCANSCIPEKVISFQIVTADGELREFSDEIDPVEMNAARISFGLLGIIYKLTFIVEPMFNF-KMKDSFPNISDYWK--PENLKNDVLNNDSVEIFYWPFNTPGLNEK----NDKLWVKTCKRTEQNVTENQIEVHIGSAFQSFELE----------FGDHVYQHVVNYPESTPFITHLLFKAGVDHESEKILQAPDAIHYQSGIDHIPCMDLEFAFKVNH--DFSNVIDEVNYIVKRIYEFAADKKYPLNIAAEFRINKASKCLLASTYDENPDTYYC--LLEVLSINGTQGFLDFSSELAERWM 431          
BLAST of Gvermi6340.t1 vs. uniprot
Match: A0A397JM26_9GLOM (D-arabinono-1,4-lactone oxidase n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JM26_9GLOM)

HSP 1 Score: 60.1 bits (144), Expect = 8.800e-6
Identity = 81/359 (22.56%), Postives = 146/359 (40.67%), Query Frame = 0
Query:  113 MLTAQSGALLSHIFAAYEMPTQAPVGQVRSV--------GGAIATGLLGGCATDSLFADSCVQISLIDSFGRLRVYSASQGGPMFNAIRMSLGVFGVIYDVSFCLDKLRRYVKVRTSFHLHRALFARGAAPLQRKLRDGVAVEVVWSPFNSY--NLRKRWRAEDDLVWLRVLKRAHSMKSEQLDVCYAVPTISQWLSRNAKSLAKGGYGGFHERHTPAYQRAAFVDTAWKLDGHRLTTSL----RHAVHHMQMEHSAMSEVSVCIPLNR-------EGDWQALSRAWFQAVAIVESKAAESEYPLNGGLRVRFARGSSALLAPN----RGKCCAMLSASSTRGTRGWSAFAGEVVAKWM 446
            ++TA++G  +S I   Y + T  P   + S          G +ATG  G  AT S+ +D  V + ++ + G++  +  +       A R++LG+FG+IY V+F  + +     +R +  L  A      + +++      ++++ + PFNS+  N  +      D +W++   R    K       +A   +SQ  S    +         + + TP  + A      W+       TS       A+H +       S  +  IPLN        + D+  + R +   +    + AA++ +P N    VR  R S  LLAPN           +  +S   T G+  FA +   KW+
Sbjct:  132 VVTAEAGTPISEID--YALRTNNPPLTLSSAIIPDFVRATGVVATGSHGAKATLSIMSDQVVSMKIVAADGKMYEFCETTNALEMKAARVNLGLFGIIYSVTFRTEPM---FNLRMTDTLPLAKDFLVPSVVKQLFESSDSIQIFYCPFNSFDSNASQPLDPTKDQMWVKQWVRTDE-KPTLTPEEFAALRVSQNTSSFQTNYQYQEMAN-NPQSTPVVRSAI-----WREGPGSSPTSFVLQAPDAIHFL-------SSTTQNIPLNIFAFAFKVDPDFNNVVREFQAIINATYTAAAQNSFPFNSFSEVRIIRSSHTLLAPNFDPDPNAIYCFIELTSYHFTTGFQTFASQFGQKWI 471          
The following BLAST results are available for this feature:
BLAST of Gvermi6340.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
R7Q4I0_CHOCR1.980e-5736.96Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X7VHZ6_AMPQE7.530e-1022.79FAD-binding PCMH-type domain-containing protein n=... [more]
A0A397JT63_9GLOM1.360e-720.95D-arabinono-1,4-lactone oxidase n=1 Tax=Diversispo... [more]
A0A397W9N7_9GLOM3.540e-622.86D-arabinono-1,4-lactone oxidase n=1 Tax=Gigaspora ... [more]
A0A397JM26_9GLOM8.800e-622.56D-arabinono-1,4-lactone oxidase n=1 Tax=Diversispo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..590
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 591..616
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 617..624
NoneNo IPR availableTMHMMTMhelixcoord: 594..616
IPR006094FAD linked oxidase, N-terminalPFAMPF01565FAD_binding_4coord: 54..178
e-value: 2.4E-6
score: 27.3
IPR016169FAD-binding, type PCMH, subdomain 2GENE3D3.30.465.10coord: 107..226
e-value: 5.6E-11
score: 44.0
IPR016166FAD-binding domain, PCMH-typePROSITEPS51387FAD_PCMHcoord: 47..212
score: 9.081235
IPR036318FAD-binding, type PCMH-like superfamilySUPERFAMILY56176FAD-binding/transporter-associated domain-likecoord: 51..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:137190..139064 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6340.t1Gvermi6340.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 137190..139064 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6340.t1 ID=Gvermi6340.t1|Name=Gvermi6340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=625bp
MDSRIVLSTFSPTVTTFLTLLEDPSRESTPADIFNSLKSAFILPVYPQAS
THRLLQASDLQQLQRAILLARSQKRRLKTVTNPSAIRAQAALASGAYVLD
VSGLSRHSKSRNMLTAQSGALLSHIFAAYEMPTQAPVGQVRSVGGAIATG
LLGGCATDSLFADSCVQISLIDSFGRLRVYSASQGGPMFNAIRMSLGVFG
VIYDVSFCLDKLRRYVKVRTSFHLHRALFARGAAPLQRKLRDGVAVEVVW
SPFNSYNLRKRWRAEDDLVWLRVLKRAHSMKSEQLDVCYAVPTISQWLSR
NAKSLAKGGYGGFHERHTPAYQRAAFVDTAWKLDGHRLTTSLRHAVHHMQ
MEHSAMSEVSVCIPLNREGDWQALSRAWFQAVAIVESKAAESEYPLNGGL
RVRFARGSSALLAPNRGKCCAMLSASSTRGTRGWSAFAGEVVAKWMAIPG
ARWAFSRDSAWLIGKEVVRGGFGDQLRLFRALYESSAADDYGMFVDEVLG
DVLQLGRFDGRAVGHWAGRRNIGRALKRWQTLDEIGNGKDRGDGCGGDNE
IGGNGRTTAKEEALNTANRLVRRRSSRRELRQASAAKREGFFMLLYVAAY
ATLWLLLFGGDACAALRESVRKFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006094Oxid_FAD_bind_N
IPR016169FAD-bd_PCMH_sub2
IPR016166FAD-bd_PCMH
IPR036318FAD-bd_PCMH-like_sf