Gvermi6180.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6180.t2
Unique NameGvermi6180.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length438
Homology
BLAST of Gvermi6180.t2 vs. uniprot
Match: A0A2V3ISJ2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISJ2_9FLOR)

HSP 1 Score: 161 bits (407), Expect = 1.500e-39
Identity = 133/460 (28.91%), Postives = 216/460 (46.96%), Query Frame = 0
Query:    2 NVEPFSVKPTSYFNRIFVDDVVNDVVHGILALIIVVELGNICQTIVYATPTLRKEALDRFLTFNRTRTLSFLHAPITS-----LCFQKARRRRHVHRRRTTWKGGRSLLSQSAGFLVALALIGC---EFMVIIAGTAVYTPITAATTNFDAKLGI-------TQDARRQRDVRPGCDDFFVPARGIQKRGAVYKCVSARSSDLFRAPDVDSFELKTGINDNTHTFSVESRNSLNSTSITLSIIIGTAGQGEQQVAPFRADIDLDYTTTVFRAVVEGSLNRSISGFDKNLTISTVEIGSQTFQYENESFGVPHA-----------------QVAAALVSQLRRMDVVLNSTSAPWVFAKARTYETRPDIVVSISASNRVPQVAVIITAVVLIVMRVIVNAHLSSFDDVSYTAMKDIIRDDCLLGPLALNTRAAPIVVP----LLSDGCERSGSSEAENRMG 425
            N   F+V   S FN    DD+ N+ + GI +L+I+V + ++ + ++YA P +RK   + ++ F+R   + +L   +++     L   + R R+ V R            +  A F+  LA+I     E   IIAG+ V +  T+   NFD ++ +       T   R + DV P CDDFFVP RG+Q+RG V KCV   S+ +   P   + +L          F V          + LS ++      + +  PFR D+  +  T          LNR ++G  + L    +++ S  + +  ES G                     +   AL ++LR  D+VLNS+ APW F  A  +  + D+V++ S  + V   A++I  VV+ V  + +N+ L+ FD+V+Y AMK++I +DC+LGPL  N RA   V+     + SD  E S   E   + G
Sbjct:  296 NGNAFTVPSVSRFNSFTTDDLTNNFISGIASLLILVHITHLIRGLMYAFPGIRKSRYNTYIIFSRLSRMRYLFRLLSAREEGVLSQIRNRPRKPVER------------NYRALFIPILAVIVLYTGEIGAIIAGSEVRSKFTSEN-NFDPRISLETTRSTSTLRPRLEDDVNPNCDDFFVPQRGLQRRGKVLKCVEENSNPMCE-PYEHTIQLNVRFGSGRMAFQVHGAGE-ECAELELSTVVRGIHGIDGRTMPFRPDLMGEVET-------RDVLNRIMNGVRRRLEYDEIDVKSDVWSFR-ESNGANDQIVDIEMYHKHEIRKTVNETKTALKAELRSADLVLNSSGAPWTFYAAYDFRQQADMVMATSKRSYVSHGALVIAVVVIYVAHIFLNSLLTYFDEVAYIAMKELIGEDCVLGPLTSNGRAEASVMRYEELMASDDEEVSARREGAEKSG 732          
BLAST of Gvermi6180.t2 vs. uniprot
Match: A0A2V3IN15_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN15_9FLOR)

HSP 1 Score: 146 bits (369), Expect = 3.110e-37
Identity = 101/279 (36.20%), Postives = 150/279 (53.76%), Query Frame = 0
Query:    1 MNVEPFSVKPTSYFNRIFVDDVVNDVVHGILALIIVVELGNICQTIVYATPTLRKEALDRFLTFNRTRTLSFLHAPITSLCFQKARRRRHVHRRRTTWKGGRSLLSQSAGF-----------LVALALIGCEFMVIIAGTAVYTPITAATTNFDAKLGITQDARRQRDVRPGCDDFFVPARGIQKRGAVYKCVSARSSDLFRAPDVDSFE----LKTGINDNTHTFSVESRNSLNSTSITLSIIIGTAGQGEQQVAPFRADIDLDYTTTVFRAVVEGSL 264
            M+  PFSV+P S FNR   D+++N  + G + L+I+VEL NI + ++Y T  L K A++R+  F R   +  L   +T           H H  R       +++ Q+A             L A+ L+  EF  I AGT   +PITA  TNFD  L ++  ARR      GCDDFFVP+RG+++   V KC++  +S + R P +   E    LK+ IN NTHT  V++   ++ T + +SI I + GQG QQ+  FR DID ++T  VF  ++ G+L
Sbjct:    1 MSRAPFSVEPVSTFNRFSTDEMINAYIGGAIVLVILVELSNIFRAVLYGTRALDKRAINRYSIFERLADMRHLSTLLTG-----RESPAHYHTDRAP-----NIIQQNAPISRNFWVLCVPTLAAVLLLSAEFASIYAGTTTPSPITA-NTNFDPLLALSTTARRTSQGN-GCDDFFVPSRGVRQAAKVLKCIT--NSSVPRNPRITWEEARISLKSTINSNTHTMLVQTGEDMH-TIVRISIEIRSIGQGTQQMGVFRWDIDYNHTLEVFNGIINGTL 264          
BLAST of Gvermi6180.t2 vs. uniprot
Match: A0A2V3IC45_9FLOR (Uncharacterized protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC45_9FLOR)

HSP 1 Score: 150 bits (380), Expect = 4.710e-37
Identity = 126/410 (30.73%), Postives = 202/410 (49.27%), Query Frame = 0
Query:    2 NVEPFSVKPTSYFNRIFVDDVVNDVVHGILALIIVVELGNICQTIVYATPTLRKEALDRFLTFNRTRTLSFLHAPITSLCFQKARRRRHVHRRRTTWKGGRSLLSQSAGFLVALALIG-CEFMVIIAGTAVYTPITAATTNFDAKLGITQDARRQRDVR---PGCDDFFVPARGIQKRGAVYKCVSARSSDLFRAPDVDSFELKTGINDNTHTFSVESRNSLNSTSITLSIIIGTAGQGEQQVAPFRADIDLDYTTTVFRAVVEGSLN--RSISGFDKNLTISTV----------EIGSQTFQYENESFGVPHAQVAAALVSQLRRMDVVLNSTSAPWVFAKARTYETRPDIVVSISASNRVPQVAVIITAVVLIVMRVIVNAHLSSFDDVSYTAMKDIIRDDCLLGPLA 395
            N  PFS    S FN    +D+ ND   GIL+LI+V +L  I + ++Y  P +       ++ F+R  +  +L    T    ++    R  HR    +  G SL +     L ALAL+   E + IIAGT + +    A  NFD K+ + + A+R R V      CDDFFV  RG+ + G V KCVS     L   P   + +L          F + SRN    T I LS  + + G    +  PFR D+  +      + ++ G LN  R   G+ +  T  T+          E+  +   Y    +      +AAA +++LR MD+VLNST  PWVF +  T+E + +  +++    R+    ++I  V++I+++ +VN  ++ FD+V++ AMK+++ +DC+LGPLA
Sbjct:   65 NTPPFSASSLSLFNSFTTNDLANDFTGGILSLIVVAQLHRIFKGLIYFFPGVHNRGYSSYVVFSRLASFRYLFRLFTR---REPFGERSQHREEEEF--GYSLKTILFP-LTALALLYIAELVTIIAGTTMRSQ-HFAEQNFDPKISVVRGAQRPRRVDNLWSDCDDFFVSTRGLFESGKVLKCVSEVRDQL--TPYKANIKLSVRYYSGDTIFDIHSRNGSYKT-IDLSTFLLSKGGVRFRTMPFRPDLSSE---PELKHLLNGILNGVRRRLGYSELDTRHTLWAGKELEGASEVAEEIIFYHFHDWNDSAETIAAAFMAELRYMDLVLNSTGLPWVFTRPYTFE-QMNPAIAVVKQYRIAHGWLLIALVLVILIQFVVNTRVTHFDEVAFLAMKELMGEDCVLGPLA 460          
BLAST of Gvermi6180.t2 vs. uniprot
Match: A0A2V3IC97_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC97_9FLOR)

HSP 1 Score: 115 bits (288), Expect = 1.290e-25
Identity = 84/273 (30.77%), Postives = 138/273 (50.55%), Query Frame = 0
Query:  138 ATTNFDAKLGITQDARRQRDVR---PGCDDFFVPARGIQKRGAVYKCVSARSSDLFRAPDVDSFELKTGINDNTHTFSVESRNSLNSTSITLSIIIGTAGQGEQQVAPFRADIDLDYTTTVFRAVVEGSLN--RSISGFDKNLTISTV----------EIGSQTFQYENESFGVPHAQVAAALVSQLRRMDVVLNSTSAPWVFAKARTYETRPDIVVSISASNRVPQVAVIITAVVLIVMRVIVNAHLSSFDDVSYTAMKDIIRDDCLLGPLA 395
            A  NFD K+ + + A+R R V      CDDFFV  RG+ + G V KCVS     L   P   + +L          F + SRN    T I LS  + + G    +  PFR D+  +      + ++ G LN  R   G+ +  T  T+          E+  +   Y    +      +A A +++LR MD+VLNST  PWVF +  T+E + +  +++    R+    ++I  V++I+++ +VN  ++ FD+V++ AMK+++ +DC+LGPLA
Sbjct:    7 AEQNFDPKISVVRGAQRPRRVDNLWSDCDDFFVSTRGLFESGKVLKCVSEVRDQL--TPYKANIKLSVRYYSGDTIFDIHSRNGSYKT-IDLSTFLLSKGGVRFRTMPFRPDLSSE---PELKHLLNGILNGVRRRLGYSELDTRHTLWAGKELEGASEVAEEIIFYHFHDWNDSAETIATAFMAELRYMDLVLNSTGLPWVFTRPYTFE-QMNPAIAVVKQYRIAHGWLLIALVLVILIQFVVNTRVTHFDEVAFLAMKELMGEDCVLGPLA 272          
BLAST of Gvermi6180.t2 vs. uniprot
Match: A0A2V3IS94_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS94_9FLOR)

HSP 1 Score: 87.0 bits (214), Expect = 8.500e-15
Identity = 104/444 (23.42%), Postives = 188/444 (42.34%), Query Frame = 0
Query:    5 PFSVKPTSYFNRIFVDDVVNDVVHGILALIIVVELGNICQTIVYATPTLRKEALDRFLTFNRTRTLSFLHAPITSLCFQK------------ARRRRH--------VHR----RRTTWKGG-------RSLLSQSAGFLVALALIGCEFMVIIAGTAVYTPITAATTNFDAKLGI-TQDARRQRDVRPGCDDFFVPARGIQKRGAVYKCVSARSSDLFRAPDVDSFELKT--GINDNTHTFSVESRNSLNSTSITLSIIIGTAGQGEQQVAPFRADIDLDYTTT--VFRAVVEGSLNRSISGFDKNLTISTVEIGSQTFQYENESFGVPHAQVAAALVSQLRRMDVVLNSTSAP-WVFAKARTYETRPDIVVSISASNRVPQVAVIITAVVLIVMRVIVNAHLSSFDDVSYTAMKDIIRDDCLLGPLALNTRAAPIVVPLLSDG 411
            PF  +  S FN  F     N ++ G+LA ++++EL N+   +VY   ++ K +LD ++ ++R  ++  +   +  + +              +  RRH         HR    +  T +G        R LL      L+   L+  +   I + +   T     T NF+  L   T+     +   P C  +    RG+++ G V  C+ +  S  F      +  L      ++N   F V    ++ S     + I   +G+    VAP R D+  D  T   + + V+  +L R       +  I T    + T+ Y          +++ A++ +LR + + +N TS   W+F     Y       +++ +SNRV Q   +I  V L++ R+I N  LS F++++Y A+K +  +   +GPLA+    AP+ V   SDG
Sbjct:    2 PFQPRGVSVFNSAFETHFPNVLLSGVLAFLVLLELENVTDVLVYRHYSINKRSLDTYMLYSRISSIRSVFRTLGGVEWASNQVATVPKSSVPSHYRRHSGERPSSEAHRLPSTKDCTPRGVPCPQLRYRKLLFP---LLIRFTLLALQLFAIYSSSTT-TRDVPVTPNFNLVLSNNTKPLPSPKGNFPSCRSWIQSTRGVEQNGDVLLCIDSEESRRFEGQPSQNTTLHFLFSPDENRFEFIVRDHLAMESRVFVKAKISFLSGENVG-VAPLRPDLTSDNGTAEELVKKVMVNALRRQRVEIRMD-DIRTFTDSNVTYNYSCSLDLCDRVKLSNAVLDELRTLKLDVNKTSTGVWLF-NGTGYIFEDKKAIAVVSSNRVAQGWFLIIWVALLLTRLIANRWLSDFEELAYAALKKVHGERMSVGPLAVTEHRAPVFVRKFSDG 438          
The following BLAST results are available for this feature:
BLAST of Gvermi6180.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3ISJ2_9FLOR1.500e-3928.91Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN15_9FLOR3.110e-3736.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IC45_9FLOR4.710e-3730.73Uncharacterized protein n=3 Tax=Gracilariopsis cho... [more]
A0A2V3IC97_9FLOR1.290e-2530.77Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IS94_9FLOR8.500e-1523.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 347..366
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 133..346
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..132
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 367..437
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3020551..3021864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6180.t2Gvermi6180.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 3020551..3021864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6180.t2 ID=Gvermi6180.t2|Name=Gvermi6180.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=438bp
MNVEPFSVKPTSYFNRIFVDDVVNDVVHGILALIIVVELGNICQTIVYAT
PTLRKEALDRFLTFNRTRTLSFLHAPITSLCFQKARRRRHVHRRRTTWKG
GRSLLSQSAGFLVALALIGCEFMVIIAGTAVYTPITAATTNFDAKLGITQ
DARRQRDVRPGCDDFFVPARGIQKRGAVYKCVSARSSDLFRAPDVDSFEL
KTGINDNTHTFSVESRNSLNSTSITLSIIIGTAGQGEQQVAPFRADIDLD
YTTTVFRAVVEGSLNRSISGFDKNLTISTVEIGSQTFQYENESFGVPHAQ
VAAALVSQLRRMDVVLNSTSAPWVFAKARTYETRPDIVVSISASNRVPQV
AVIITAVVLIVMRVIVNAHLSSFDDVSYTAMKDIIRDDCLLGPLALNTRA
APIVVPLLSDGCERSGSSEAENRMGCDTNSRAEHDVW*
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