Gvermi6043.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6043.t2
Unique NameGvermi6043.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length156
Homology
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A2V3J0K9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0K9_9FLOR)

HSP 1 Score: 131 bits (329), Expect = 7.390e-37
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 0
Query:   77 RCTVAARPVTRRNTAPAKMTLGGPLATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE 155
            RCTV+ARPV RR TAPAKM++   LATLP+LP+AEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGER+GRG+E
Sbjct:   22 RCTVSARPVARRATAPAKMSIENTLATLPSLPVAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERIGRGEE 100          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A7S1XCP1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCP1_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 2.180e-13
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0
Query:  104 LPTLPLAEG--MAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGD 154
            L  + +AEG  MAVTFPAYLAVFLGTL P AFLI+L+IQ+E+RKAGE  GRG+
Sbjct:   67 LANVMIAEGGGMAVTFPAYLAVFLGTLFPVAFLIILFIQSEARKAGEEAGRGE 119          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A4D9CNG8_9STRA (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A4D9CNG8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.210e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0
Query:  113 MAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGD 154
            + VTF AYLAV LGT +P AFLI+LYIQ+ESRKAGE  GRG+
Sbjct:   82 LEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGRGE 123          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A835ZJC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJC8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.590e-9
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0
Query:  104 LPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGR 152
            LPT  +A  + V F AYLAV LGT +P AFLIVLYIQ+ESRKAGER GR
Sbjct:   68 LPTQLMA--LEVQFGAYLAVLLGTFVPVAFLIVLYIQSESRKAGERSGR 114          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A5J4YYD7_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYD7_PORPP)

HSP 1 Score: 58.5 bits (140), Expect = 2.220e-8
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0
Query:  109 LAEG--MAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAG 147
            LAEG  M+V+FPAYLAV LGT +P AFL++LYIQ+E+RKAG
Sbjct:   54 LAEGGGMSVSFPAYLAVLLGTFVPVAFLVILYIQSEARKAG 94          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A7J7IRK1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRK1_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 1.420e-7
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0
Query:  101 LATLPTLPLAE---GMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAG-ERVGRGDE 155
            L+ LP+L  A     M V F AYLAVFLGTLIP AFLI+LYIQ+E+RKA  E V  G E
Sbjct:   42 LSGLPSLANAGEDGAMTVQFGAYLAVFLGTLIPVAFLIILYIQSETRKAAMEAVSGGSE 100          
BLAST of Gvermi6043.t2 vs. uniprot
Match: M1V7K1_CYAM1 (Photosystem II protein M n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7K1_CYAM1)

HSP 1 Score: 57.4 bits (137), Expect = 1.710e-7
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   95 MTLGGPLATLPTLPLA---EGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERV--GRGDE 155
            ++L   +  LP++  A    GM V F AYLAVFLGTLIP AFLI+LYIQ+E+RKA      G G E
Sbjct:   77 VSLAAAMWALPSMGYAAEESGMTVQFGAYLAVFLGTLIPVAFLIILYIQSETRKAAMEAVSGSGSE 142          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A1Z5J666_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J666_FISSO)

HSP 1 Score: 55.8 bits (133), Expect = 2.440e-7
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
Query:   69 ARSTSQAARCTVAARPVTRRNTAPAKMTLGGPLATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVG 151
            A   SQ A+   AA PV   + APA   L   +A +PT  +A  + V F AY+AV LGTL+PC FLI L+IQ ESRKAG + G
Sbjct:   20 APQVSQVAKAATAAVPVAALS-APA-FALDSIVANMPTNTVA--LEVQFGAYMAVALGTLLPCLFLINLFIQTESRKAGRQGG 98          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A7S1UBI4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBI4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.670e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0
Query:  101 LATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE 155
            +A +PT  +A  + V F AYLA  LGT +P AFLI+LYIQ E+RKAG + G  D+
Sbjct:   63 IANMPTESVA--LEVQFAAYLATLLGTFVPVAFLIILYIQTETRKAGAQFGDSDD 115          
BLAST of Gvermi6043.t2 vs. uniprot
Match: A0A7S2LHI4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHI4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.570e-6
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0
Query:  104 LPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE 155
            LPT  +A  + + F AYLAV LGT +PC FLI LY+Q ESRKAG   G+  E
Sbjct:   77 LPTQTVA--LEIQFAAYLAVLLGTFLPCLFLINLYVQTESRKAGRAGGQDSE 126          
The following BLAST results are available for this feature:
BLAST of Gvermi6043.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2V3J0K9_9FLOR7.390e-3784.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1XCP1_9RHOD2.180e-1369.81Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A4D9CNG8_9STRA6.210e-1071.43Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A835ZJC8_9STRA5.590e-969.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4YYD7_PORPP2.220e-870.73Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7J7IRK1_9RHOD1.420e-761.02Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1V7K1_CYAM11.710e-753.03Photosystem II protein M n=1 Tax=Cyanidioschyzon m... [more]
A0A1Z5J666_FISSO2.440e-749.40Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1UBI4_9STRA4.670e-752.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2LHI4_9STRA1.570e-655.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007826Photosystem II PsbMTIGRFAMTIGR03038TIGR03038coord: 113..145
e-value: 4.0E-12
score: 43.6
IPR007826Photosystem II PsbMPFAMPF05151PsbMcoord: 113..143
e-value: 4.6E-6
score: 26.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..116
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
IPR037269Photosystem II PsbM superfamilySUPERFAMILY161033Photosystem II reaction center protein M, PsbMcoord: 113..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1857715..1858295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t2Gvermi6043.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1857715..1858295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6043.t2 ID=Gvermi6043.t2|Name=Gvermi6043.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=156bp
MYAFVSTTGLALARPGSFTRARTAAPEALWSGAKVKTYRLADRFTRSLTT
DANYLMSISAVQHHASPDARSTSQAARCTVAARPVTRRNTAPAKMTLGGP
LATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERV
GRGDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007826PSII_PsbM
IPR037269PSII_PsbM_sf