Gvermi5967.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5967.t1
Unique NameGvermi5967.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Homology
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BLAST of Gvermi5967.t1 vs. uniprot
Match: A0A2V3IK42_9FLOR (SAM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK42_9FLOR)

HSP 1 Score: 192 bits (489), Expect = 1.630e-57
Identity = 117/229 (51.09%), Postives = 155/229 (67.69%), Query Frame = 0 
Query:   30 WRNASNNERFAIVVATLAALAFAGTVLNVVFSLSIFLAVTVVSLIAAPLLFLVMLSFTAFIAGILMTTGFAYAVFGAPIFTVALMTKMLLPVLAIGAGASYAVTRLLRIAAPRRRATPRPTADFERPPEADTPVDQFERFDDILSARV-SGSRARNAETWALNDVIDELDISGLGEYRQLFIQERIDGHALLNLSDDDIRAEFAPTMPLGDRMRLMRLVARLRKRSSRL 257
            W+ AS +ER   +  +L A+  AGTV+NV+F +S+ LA  VVSL+AAP++FLVMLSFTAFI G+LMT G  + +   P     L+ K +LPVLA+  GAS+   RLL     R+         F R  E D    +FE+FD+ L  RV  GSR+ +  +W+L++V+DELD++GLGEYRQLFI ERIDG  LL LS+ DI+ EF+ TMPLGDRMRL RLV  L++RS+RL
Sbjct:   30 WQGASPSERLLAIATSLGAVLLAGTVVNVLFHVSLMLAFGVVSLVAAPIVFLVMLSFTAFIFGVLMTAGVGFFLLNTPFLAFGLLAKTMLPVLAVVGGASFLAARLLGFKPGRKDIVD----SFPRIDEED----EFEQFDNALRNRVVEGSRSWDVASWSLSEVVDELDLTGLGEYRQLFIDERIDGRTLLLLSERDIKEEFSRTMPLGDRMRLTRLVEELKRRSTRL 250
The following BLAST results are available for this feature:
BLAST of Gvermi5967.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IK42_9FLOR1.630e-5751.09SAM domain-containing protein n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 185..253
e-value: 1.5E-5
score: 34.5
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 187..250
e-value: 8.3E-7
score: 29.4
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 188..253
score: 11.987938
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 174..256
e-value: 1.1E-13
score: 52.7
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 183..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..136
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 57..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..111
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 137..257
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 83..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..82
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 38..60
NoneNo IPR availableTMHMMTMhelixcoord: 117..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1539315..1540088 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5967.t1Gvermi5967.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1539315..1540088 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5967.t1 ID=Gvermi5967.t1|Name=Gvermi5967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MRHYRRNSSAARRTAPKSLANLSHTIRDAWRNASNNERFAIVVATLAALA
FAGTVLNVVFSLSIFLAVTVVSLIAAPLLFLVMLSFTAFIAGILMTTGFA
YAVFGAPIFTVALMTKMLLPVLAIGAGASYAVTRLLRIAAPRRRATPRPT
ADFERPPEADTPVDQFERFDDILSARVSGSRARNAETWALNDVIDELDIS
GLGEYRQLFIQERIDGHALLNLSDDDIRAEFAPTMPLGDRMRLMRLVARL
RKRSSRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed_sf