Gvermi5954.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5954.t1
Unique NameGvermi5954.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length144
Homology
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A2V3IMA4_9FLOR (Profilin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMA4_9FLOR)

HSP 1 Score: 233 bits (593), Expect = 1.230e-76
Identity = 108/142 (76.06%), Postives = 126/142 (88.73%), Query Frame = 0
Query:    2 SWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            SWQ+Y+DDQL+AAG MYAAIY HDG+ WA+SPGF +S EEC+VL +AL  ++LGKIS SGFTIATQ+YTFTRGEVD EEG PSY QGRCKEEGK++QGVIIY T QAFVIGVHDP Y+DGASFG VNT+AGR+ADY+M+LGF
Sbjct:    3 SWQTYVDDQLMAAGCMYAAIYGHDGSKWASSPGFDISNEECEVLVEALVNSNLGKISGSGFTIATQKYTFTRGEVDDEEGNPSYAQGRCKEEGKSAQGVIIYATTQAFVIGVHDPQYADGASFGSVNTDAGRVADYLMELGF 144          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A1X6NT81_PORUM (Profilin n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NT81_PORUM)

HSP 1 Score: 189 bits (480), Expect = 1.950e-59
Identity = 90/143 (62.94%), Postives = 109/143 (76.22%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQSYIDDQLLAAGF YA+I  HDGT WA SPG++V  EE + LA  L    L  I+  GF++A QRY FTRGEVD +EGG  + QGRCKEEGK+SQGVI+  T  A ++GVHDP Y++GASFGKVNT+ GR+ADY ++ GF
Sbjct:    1 MSWQSYIDDQLLAAGFSYASIVGHDGTTWACSPGYSVLPEEAKSLATLLSSTSLESIAGPGFSVAGQRYAFTRGEVDDDEGGVPFIQGRCKEEGKSSQGVIVMRTTSALLVGVHDPAYANGASFGKVNTDIGRLADYFVESGF 143          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A7S1TMC4_9RHOD (Profilin n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMC4_9RHOD)

HSP 1 Score: 181 bits (459), Expect = 3.270e-56
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKE--NDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQ+YID  LL AGF YA+I  HDG+ WA SPG+TV   E   L   L    +DL  I+S GF +A Q+Y FTRGEVD E+GG  Y QGRCKEEGK++QG+IIY T +A ++GVHDP YS+GASFGKVNTE G++ADY+ + GF
Sbjct:    1 MSWQTYIDSNLLGAGFCYASICGHDGSTWACSPGYTVLPAEASKLNSLLSGTMDDLNSIASGGFYVAGQKYAFTRGEVDDEDGGVPYLQGRCKEEGKSAQGIIIYRTAKALIVGVHDPAYSNGASFGKVNTEIGKVADYMFENGF 145          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A1X6P840_PORUM (Profilin n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P840_PORUM)

HSP 1 Score: 179 bits (454), Expect = 1.770e-55
Identity = 88/143 (61.54%), Postives = 106/143 (74.13%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQSYIDDQLLAAGF YA+I  HDG++WA S G+TV  EE   LA+ L    L  I+S+GF +A Q+Y +TRGEVD +EGG  + QGRCKEEGK++QG II  T QA +I VHDP YS GA+FGKVN E  RIADY ++ GF
Sbjct:    1 MSWQSYIDDQLLAAGFCYASINGHDGSLWACSKGYTVLPEEAIKLAELLGGTSLDSIASTGFLLAGQKYAYTRGEVDDDEGGVPFLQGRCKEEGKSAQGCIIMRTSQAVIIAVHDPAYSGGATFGKVNIEIARIADYFVESGF 143          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A7S0ZK44_9RHOD (Profilin n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK44_9RHOD)

HSP 1 Score: 175 bits (444), Expect = 6.260e-54
Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKEN--DLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQ+Y+D  LL AGF YAAI  HDG +WA SPG+TV   E   L   L     +L  I++ GF +A Q+Y FTRGEVD E+GG  + QGRCKEEGK++QG+I+Y TG+A +IGVHDP YS+GASFGKVNTE G++ADY+ + G+
Sbjct:    1 MSWQTYVDANLLGAGFCYAAICGHDGAMWANSPGYTVLPAEAVKLDGLLSGTMENLSSIANGGFYVAGQKYAFTRGEVDDEDGGVPFLQGRCKEEGKSAQGIIVYRTGKALIIGVHDPAYSNGASFGKVNTEIGKVADYMFENGY 145          
BLAST of Gvermi5954.t1 vs. uniprot
Match: R7QK25_CHOCR (Profilin n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK25_CHOCR)

HSP 1 Score: 172 bits (435), Expect = 1.420e-52
Identity = 80/143 (55.94%), Postives = 106/143 (74.13%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALK-ENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLG 142
            M+WQ+YIDD L+ AGFMYAAI  HD + WA +  F V   E ++L   L  E    +IS++GF +A Q+YT TR E+D ++GG ++ QGRCKEEGK++QGVII CT Q+ ++GVHDP YS+GASFGK NT+ GR+ADYIM+ G
Sbjct:    1 MTWQTYIDDHLVPAGFMYAAIVGHDASTWANTKDFQVLDAETKILVSLLTGEKSFDEISTTGFHVAGQKYTMTRYEIDDDDGGAAFLQGRCKEEGKSAQGVIIMCTAQSLIVGVHDPKYSNGASFGKANTDIGRVADYIMEAG 143          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A5J4YIH8_PORPP (Profilin n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIH8_PORPP)

HSP 1 Score: 167 bits (423), Expect = 1.010e-50
Identity = 82/146 (56.16%), Postives = 103/146 (70.55%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQAL---KENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQ+Y+D  LL AGF YAAI  HDG+ WAASPG+TV  +E   LAQ L    +    ++SS GF +A Q+Y FTR EVD ++GG    QGRCKEEGK++QG+IIY T QA +IG HDP YS+GASF K N E G++ADY+ +  F
Sbjct:    1 MSWQTYVDQNLLGAGFCYAAIVGHDGSTWAASPGYTVLPDEAARLAQLLGGDADTINTQLSSGGFKVAGQQYAFTRAEVDDDDGGVPTLQGRCKEEGKSAQGIIIYRTAQALIIGCHDPAYSNGASFNKANMEMGKVADYMFENSF 146          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A7S1TDT3_9RHOD (Profilin n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT3_9RHOD)

HSP 1 Score: 163 bits (412), Expect = 4.320e-49
Identity = 78/143 (54.55%), Postives = 99/143 (69.23%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQ YID QLL AGF YA+I   DG+ WA+S G+ +  +E +  A  L    L  +S++GFT A Q+Y FTRGEV+   G   + QGRCKE+GK+SQG+II  T QA ++GVHDP YS+GASFG  NT  GRIADY ++ GF
Sbjct:    1 MSWQDYIDGQLLRAGFCYASIVGFDGSCWASSQGYVILPDEAKRFASLLAGTSLDSLSAAGFTAAGQKYAFTRGEVNDPNGSVPFIQGRCKEDGKSSQGIIIMKTTQALIVGVHDPAYSNGASFGSANTAIGRIADYFVESGF 143          
BLAST of Gvermi5954.t1 vs. uniprot
Match: M2XQ49_GALSU (Profilin n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XQ49_GALSU)

HSP 1 Score: 151 bits (381), Expect = 2.090e-44
Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSWQSYIDD LLA+GF YAAI   DG+ WA SPGF +  EE  +L++ L E ++  I+S+GFT+A Q+Y FTR ++D EE  PS  QGRCKEEG + +G+I+  + QA ++GVHDP Y+  A+F +VN +   +A+Y+M+ GF
Sbjct:    1 MSWQSYIDDNLLASGFCYAAICGFDGSPWANSPGFQLLPEEATLLSKVLSEGNIDTIASNGFTVAGQKYAFTRADLDDEEAAPSI-QGRCKEEGLSGRGLIVMKSNQALIVGVHDPEYTS-ATFRQVNLDMTNLANYLMENGF 141          
BLAST of Gvermi5954.t1 vs. uniprot
Match: A0A2V3IVN0_9FLOR (Profilin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVN0_9FLOR)

HSP 1 Score: 95.1 bits (235), Expect = 2.740e-22
Identity = 52/145 (35.86%), Postives = 78/145 (53.79%), Query Frame = 0
Query:    1 MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALKEND--LGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGVIIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF 143
            MSW  Y+D  L+ AGF +A I  HDG +W ++P F V   E   L   L ++   +     SGFT+    Y   R  +D  E       GRCK+ GK ++G I+  T ++ +IG+HDP YSDG SFG+      ++A+ ++ + F
Sbjct:    1 MSWDPYVDT-LVEAGFHHACIAGHDGHVWGSTPDFKVQNAEIIRLVSVLLDDPEAIRAAYKSGFTLCVMPYALNR--LDEAEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSDGKSFGRAKVAVFQLAETLIAMNF 142          
The following BLAST results are available for this feature:
BLAST of Gvermi5954.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMA4_9FLOR1.230e-7676.06Profilin n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
A0A1X6NT81_PORUM1.950e-5962.94Profilin n=1 Tax=Porphyra umbilicalis TaxID=2786 R... [more]
A0A7S1TMC4_9RHOD3.270e-5660.00Profilin n=1 Tax=Erythrolobus australicus TaxID=10... [more]
A0A1X6P840_PORUM1.770e-5561.54Profilin n=1 Tax=Porphyra umbilicalis TaxID=2786 R... [more]
A0A7S0ZK44_9RHOD6.260e-5457.93Profilin n=1 Tax=Timspurckia oligopyrenoides TaxID... [more]
R7QK25_CHOCR1.420e-5255.94Profilin n=1 Tax=Chondrus crispus TaxID=2769 RepID... [more]
A0A5J4YIH8_PORPP1.010e-5056.16Profilin n=1 Tax=Porphyridium purpureum TaxID=3568... [more]
A0A7S1TDT3_9RHOD4.320e-4954.55Profilin n=1 Tax=Compsopogon caeruleus TaxID=31354... [more]
M2XQ49_GALSU2.090e-4451.75Profilin n=1 Tax=Galdieria sulphuraria TaxID=13008... [more]
A0A2V3IVN0_9FLOR2.740e-2235.86Profilin n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005455ProfilinPRINTSPR01640PROFILINPLNTcoord: 1..11
score: 54.42
coord: 23..36
score: 49.22
coord: 68..77
score: 30.0
IPR005455ProfilinSMARTSM00392prof_2coord: 1..143
e-value: 1.1E-22
score: 91.4
IPR005455ProfilinPFAMPF00235Profilincoord: 1..142
e-value: 1.7E-28
score: 99.3
IPR005455ProfilinPANTHERPTHR11604PROFILINcoord: 1..142
IPR005455ProfilinCDDcd00148PROFcoord: 2..143
e-value: 2.51029E-25
score: 91.618
NoneNo IPR availableGENE3D3.30.450.30Dynein light chain 2a, cytoplasmiccoord: 1..142
e-value: 6.1E-29
score: 102.7
NoneNo IPR availablePIRSRPIRSR022993-1PIRSR022993-1coord: 40..117
e-value: 0.27
score: 8.7
NoneNo IPR availablePANTHERPTHR11604:SF0PROFILINcoord: 1..142
IPR027310Profilin conserved sitePROSITEPS00414PROFILINcoord: 1..8
IPR036140Profilin superfamilySUPERFAMILY55770Profilin (actin-binding protein)coord: 1..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1422472..1423111 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5954.t1Gvermi5954.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1422472..1423111 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5954.t1 ID=Gvermi5954.t1|Name=Gvermi5954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=144bp
MSWQSYIDDQLLAAGFMYAAIYAHDGTIWAASPGFTVSAEECQVLAQALK
ENDLGKISSSGFTIATQRYTFTRGEVDSEEGGPSYCQGRCKEEGKTSQGV
IIYCTGQAFVIGVHDPNYSDGASFGKVNTEAGRIADYIMDLGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005455PFN
IPR027310Profilin_CS
IPR036140PFN_sf