Gvermi5925.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5925.t1
Unique NameGvermi5925.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length212
Homology
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BLAST of Gvermi5925.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 71.2 bits (173), Expect = 1.890e-11
Identity = 66/217 (30.41%), Postives = 95/217 (43.78%), Query Frame = 0 
Query:    1 MALQDHRKLR----ICFAIDGSGSIDGREFNLQKRLMLDVTYALRNSFEVNAAATQYGIVIDEISPLNDFIGADGEERSADDSSDDPSFTELVRGEEQIGSHETFIAPGLQYCLAELTKDGINEEQNVSNVAVIMGDGRSTFGDMEEVTGPVGIAETFTQVGDVFVIMLGRG---GDNILPRLVGENEAHITVVEDVGIDGAFGELRNEIVRKICNL 210
            +ALQ   K R    ICFA+DGSGS+D  EF L+K     V   +    +   AA QYG+    IS L +               D  +F E V   E + +  TFIAPGL  C+ +       E +++    V++GDGRS F        PV IA+ F    +  +  +G G    D +L  + G  E    V + + +     EL    V ++C L
Sbjct:   47 LALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTE---------------DADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLK-GEPKHI----VLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAEL----VGEVCGL 239
The following BLAST results are available for this feature:
BLAST of Gvermi5925.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQR5_9FLOR1.890e-1130.41Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 8..208
e-value: 1.2E-4
score: 31.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 11..189
e-value: 1.0E-9
score: 38.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 10..207
score: 12.489398
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 3..210
e-value: 1.6E-15
score: 59.3
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 10..210
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 13..183
e-value: 3.37908E-9
score: 51.9086

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1119024..1119659 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5925.t1Gvermi5925.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1119024..1119659 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5925.t1 ID=Gvermi5925.t1|Name=Gvermi5925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=212bp
MALQDHRKLRICFAIDGSGSIDGREFNLQKRLMLDVTYALRNSFEVNAAA
TQYGIVIDEISPLNDFIGADGEERSADDSSDDPSFTELVRGEEQIGSHET
FIAPGLQYCLAELTKDGINEEQNVSNVAVIMGDGRSTFGDMEEVTGPVGI
AETFTQVGDVFVIMLGRGGDNILPRLVGENEAHITVVEDVGIDGAFGELR
NEIVRKICNLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf