Gvermi5924.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5924.t1
Unique NameGvermi5924.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length245
Homology
BLAST of Gvermi5924.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 3.110e-36
Identity = 95/248 (38.31%), Postives = 133/248 (53.63%), Query Frame = 0
Query:    1 MVARCLIFSLGIALLASCHASFVSRPHQNLASVPNALNT-PENQAKIDEAIQYAQENYPDCRPNVCFALDGSGSISGGEYDQQKGFVLTTSALLAGLYS---SSDFAAVQYAVLIEQISPLTNDMLPPRGFLGKVADSEKMGSGYTFIAPGLQYCMVEFERSPQAVNQIIILGDGRSNFGD-NYPFGAPSQAARFLENPNNRIAAGLVGEGNFEFFKQLVGGDESLVMRAPNWNSIVNILRDFVDAVC 243
            M+AR   F L  A  A C   F   P   + ++ + L T   N+A+ID A++  +E    C PN+CFA+DGS SI+  E+  Q  FV    AL+ GL S    S ++A+QY +  + +S  T D      FL KV  + ++ S  TFIAPG+  CM +F R     N+II+LGDGRS F   + P   PS AA+FL  PNN I A  V     E  +++ G D   V    +W S+V++L D V+ VC
Sbjct:    1 MIART--FFLCCAFFAVC---FAVVPEARIEALNSPLTTGAANRAQIDRALEIVEET--GCEPNLCFAIDGSSSITDDEFQLQLDFV----ALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAA---AFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITG-DPDRVFSVADWMSVVDVLADLVEQVC 233          
BLAST of Gvermi5924.t1 vs. uniprot
Match: R7Q5C2_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 90.1 bits (222), Expect = 5.440e-18
Identity = 63/202 (31.19%), Postives = 106/202 (52.48%), Query Frame = 0
Query:   44 AKIDEAIQYAQENYPDCRPNVCFALDGSGSISGGEYDQQKGFVLTTSALLAGLYSSSDFAAVQYAVLIEQISPLTNDMLPPRGFLGKVADSEKMGSGYTFIAPGLQYCMVEFERSPQAVNQ-IIILGDGRSNFGDNYPFGAPSQAARFLENPNNRIAAGLVGEGNFEFFKQLVGGDESLVMRAPNWNSIVNILRDFVDAVCQ 244
            AK  +++Q        C  ++CFALDGSGSIS  EY  QK  V   + L A   +++ F+AVQY +  E IS  T+D   P  F+  V +S  + +  TF+  GL +C+ +   +P+A  + +++LGDGR    DNY   + +   +  E+ +   A G+    + +   ++ GG ++ V  A N+  +  ++ D V A+C 
Sbjct:   62 AKTIDSLQTEVCRDGSCDISLCFALDGSGSISAEEYQVQKDLVKLIAILAAP--ANATFSAVQYGLANEFISVSTSD---PFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGR----DNYMESSLALVLKSAESVDI-FAVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALCS 253          
BLAST of Gvermi5924.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 78.6 bits (192), Expect = 5.380e-14
Identity = 59/185 (31.89%), Postives = 85/185 (45.95%), Query Frame = 0
Query:   60 CRPNVCFALDGSGSISGGEYDQQKGFVLTTSALLAGLYSSSDFAAVQYAVLIEQISPLTNDMLPPRGFLGKVADSEKMGSGYTFIAPGLQYCMVEFERSPQAVNQIIILGDGRSNFGDNYPFGAPSQAARFLE-NPNNRIAAGLVGEGNFEFFKQLVGGDESLVMRAPNWNSIVNILRDFVDAVC 243
            C  NVCFALDGS S++  +Y+ QK FV   SA+L     +S F+AVQY   +  ISPLT  +     F  KV  S       + I  G+ YC  +         +II+ GDGR     +    A S AA F + +PN R++   VG  N    K +       +     +   ++++ D    VC
Sbjct:   44 CNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSI---DDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRETSKTD----AVSIAASFKDFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVDLFLEVC 221          
BLAST of Gvermi5924.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 63.5 bits (153), Expect = 2.060e-8
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   60 CRPNVCFALDGSGSISGGEYDQQKGFV-LTTSALLAGLYSSSDFAAVQYAVLIEQISPLTNDMLPPRGFLGKVADSEKMGSGYTFIAPGLQYCMVEFERSPQAVNQ-IIILGDGRSNF 175
            C   +CFALDGSGSIS  ++  Q+  V L  S    G    + F+AVQY +    IS  T +   P+ F   V DS    +  TFI  GL +C+   +  P+   + I++LGDGRSNF
Sbjct:   65 CNMRLCFALDGSGSISPVQFKVQQDLVKLLASVAREG---GATFSAVQYGLSNTAISTPTGNA--PK-FRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSNF 176          
The following BLAST results are available for this feature:
BLAST of Gvermi5924.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ISA4_9FLOR3.110e-3638.31VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q5C2_CHOCR5.440e-1831.19VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3ID60_9FLOR5.380e-1431.89Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
R7Q3A9_CHOCR2.060e-838.98VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 61..243
e-value: 3.0E-8
score: 43.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 63..234
e-value: 8.5E-11
score: 42.4
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 63..242
score: 10.781179
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 51..244
e-value: 5.6E-17
score: 64.1
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 39..244
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..244
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score: 5.0
NoneNo IPR availableCDDcd00198vWFAcoord: 63..220
e-value: 2.0413E-13
score: 64.1242

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1117037..1117771 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5924.t1Gvermi5924.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1117037..1117771 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5924.t1 ID=Gvermi5924.t1|Name=Gvermi5924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bp
MVARCLIFSLGIALLASCHASFVSRPHQNLASVPNALNTPENQAKIDEAI
QYAQENYPDCRPNVCFALDGSGSISGGEYDQQKGFVLTTSALLAGLYSSS
DFAAVQYAVLIEQISPLTNDMLPPRGFLGKVADSEKMGSGYTFIAPGLQY
CMVEFERSPQAVNQIIILGDGRSNFGDNYPFGAPSQAARFLENPNNRIAA
GLVGEGNFEFFKQLVGGDESLVMRAPNWNSIVNILRDFVDAVCQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf