Gvermi5916.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5916.t1
Unique NameGvermi5916.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length277
Homology
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BLAST of Gvermi5916.t1 vs. uniprot
Match: A0A2V3IVP9_9FLOR (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVP9_9FLOR)

HSP 1 Score: 125 bits (313), Expect = 1.140e-30
Identity = 105/279 (37.63%), Postives = 137/279 (49.10%), Query Frame = 0 
Query:    1 MSFGDVALTLP-AADAQSAPVIAELQRLLKPLAANNAALKSTTKSL---LNPQPDSPPNLKRVRALREQNRQIARAAQALVNAIDTRLAAASTQIVQRANAVKKEYQLHLDEFSAAFRQSVQAEKQYIETSQQAVIEQRSRRQMENQAALQQERDAAR--AASEADPLLQSAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQDVERAQRELLKTKKRHERNKRFFFGALITMALIIAIVLIL 273
            MSF DVA  LP AAD  SAP +AELQRLLKPLAANN AL+     L    +P P++P  L+RVRALREQNR I RAA  LV A+D  L  AS  +++RA   K  +Q  L +FS     S  AE  Y++  QQ           E+Q AL +E         +E+ PLL ++Q                                                               S +DV+RA+ EL KTK+RHERNKRFFF +L+++A ++A++LIL
Sbjct:    1 MSFADVAHKLPVAADVHSAPAVAELQRLLKPLAANNTALQHAAAQLSSDASPLPNAPL-LRRVRALREQNRHIVRAASNLVVALDALLPNASAPLLRRAADAKARFQTLLHDFSRLVHHSAAAENAYLQRLQQQPAPHEPHALTESQTALVEEEKQLLFVTPTESQPLLPASQRTAAERATLRELHTTHSLAREQNTVLTEMQSSIHDVNSIFKDLAVMVADQRPQLEYVEVALSDSTRDVQRARNELEKTKRRHERNKRFFFVSLLSVAAVVAVLLIL 278
The following BLAST results are available for this feature:
BLAST of Gvermi5916.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IVP9_9FLOR1.140e-3037.63t-SNARE coiled-coil homology domain-containing pro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..82
NoneNo IPR availableCOILSCoilCoilcoord: 228..252
NoneNo IPR availableGENE3D1.20.5.110coord: 165..276
e-value: 4.9E-16
score: 60.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..178
NoneNo IPR availablePANTHERPTHR19957:SF38LD23667Pcoord: 41..265
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..254
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 276..276
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 255..275
NoneNo IPR availableCDDcd15840SNARE_Qacoord: 186..244
e-value: 1.54114E-10
score: 53.6717
NoneNo IPR availableTMHMMTMhelixcoord: 255..274
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 178..245
e-value: 1.1E-7
score: 41.5
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 183..245
score: 14.447828
IPR045242SyntaxinPANTHERPTHR19957SYNTAXINcoord: 41..265
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 21..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:796218..797048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5916.t1Gvermi5916.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 796218..797048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5916.t1 ID=Gvermi5916.t1|Name=Gvermi5916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=277bp
MSFGDVALTLPAADAQSAPVIAELQRLLKPLAANNAALKSTTKSLLNPQP
DSPPNLKRVRALREQNRQIARAAQALVNAIDTRLAAASTQIVQRANAVKK
EYQLHLDEFSAAFRQSVQAEKQYIETSQQAVIEQRSRRQMENQAALQQER
DAARAASEADPLLQSAQRTSRERATLRELSTNQSIARETNQVLTEVQSSI
GDVNTIFKDLAVMIGDQRSQVDYVEVAVADSAQDVERAQRELLKTKKRHE
RNKRFFFGALITMALIIAIVLILLLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR045242Syntaxin
IPR010989SNARE