Gvermi5850.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5850.t1
Unique NameGvermi5850.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length185
Homology
BLAST of Gvermi5850.t1 vs. uniprot
Match: A0A2V3IFB2_9FLOR (Protein LSM12-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFB2_9FLOR)

HSP 1 Score: 256 bits (654), Expect = 1.080e-84
Identity = 125/184 (67.93%), Postives = 146/184 (79.35%), Query Frame = 0
Query:    1 MDARPQPGMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRITSVADANGVKP 184
            MDARPQPGM FEVGKPIA+ L+DGS LRGFVHAED+GA LLCLELIPSA++ALV +VN+KS +P    A++RKWPSNF +DL KLR +ERR  EK E EF++LGVGVSP AQA+FD LAKTM C WDG+DILILD+VRLAPPY  K +S    G    VERV+M+L  EAH I +  DANGVKP
Sbjct:    1 MDARPQPGMKFEVGKPIAIQLNDGSFLRGFVHAEDKGAALLCLELIPSAKVALVSIVNIKSASPLTQIADTRKWPSNFHIDLAKLRAEERRICEKREAEFNKLGVGVSPSAQAIFDTLAKTMPCKWDGEDILILDTVRLAPPYNAKCLS----GDTGVVERVKMILENEAHSIRNATDANGVKP 180          
BLAST of Gvermi5850.t1 vs. uniprot
Match: R7QH47_CHOCR (LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH47_CHOCR)

HSP 1 Score: 182 bits (462), Expect = 9.970e-56
Identity = 88/174 (50.57%), Postives = 117/174 (67.24%), Query Frame = 0
Query:    9 MSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRITSVADANGV 182
            M+FEVGKP++V L DG+ L+GFVHAED  AGL+CLELIPSA + L+P+ NVKS  P P  A+SRKWP+N  +DL +L+ ++ R + K   EF+ +GVGV+P  QAVFDVLAKT+ C W+G  I++  +VRL PPY +K+I            RV+MVL R         + NGV
Sbjct:    1 MAFEVGKPLSVQLVDGTALKGFVHAEDAAAGLVCLELIPSADLTLLPISNVKSATPIPDLADSRKWPANLDVDLPRLKAEQERIFRKRHIEFTHIGVGVTPEGQAVFDVLAKTLPCEWEGNVIVVFGTVRLGPPYDIKSI------------RVRMVLERRTRTPRPAEETNGV 162          
BLAST of Gvermi5850.t1 vs. uniprot
Match: A0A2V0NSF4_9CHLO (AD domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NSF4_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-16
Identity = 53/178 (29.78%), Postives = 95/178 (53.37%), Query Frame = 0
Query:    8 GMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPS----------AQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEG--SGHAAAVERVQMVLTREAHRI 173
            G  + +G  + +  +    + G V A D     L L+   +          A+ A+  LV+ +   P  HP E   +  N  +D ++ RL E +  ++ E + +++GVGV+  AQ++FD L+KT+ C W G+DI++++SV + PPY  ++ +  G  +G   A+ER++ VLT E  R+
Sbjct:   13 GSQWAIGCKVTIRTTFDEEVTGTVFAYDAATDSLVLQQAGTHGGVNNLRLYAKAAIKELVSAE---PPSHPPEL--FLPN--VDRERARLREEKALKQAEADLAKVGVGVTREAQSIFDALSKTLPCAWRGRDIIVMESVVVPPPYNPESCAARGGGAGEGGALERIRRVLTAERSRL 183          
BLAST of Gvermi5850.t1 vs. uniprot
Match: A0A2R6P3K0_ACTCC (AD domain-containing protein n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6P3K0_ACTCC)

HSP 1 Score: 78.2 bits (191), Expect = 8.780e-15
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 0
Query:    1 MDARPQPGMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLE------LIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRITS 175
            MDA    G  F VG  +++  + G    G +   DR + +L L+        P   I L+    +K  + +   AE         LDL  L+  E     + E E  +LGVGV+P+AQ++FD L+KT+   WD   I++++ VR++ PY  ++++    G  AA ERV+ VL  E  R+ S
Sbjct:    1 MDANSFGGEEFAVGCILSIKTTLGDEFDGQIITFDRPSNILVLQEGIKSVSGPRRNIRLLKANYIKEFS-YLGQAEDPLNSKKCYLDLSALQAREESAIRQAEIEAERLGVGVTPVAQSIFDALSKTLPVRWDKTAIVVMNEVRVSSPYLPESVA---GGTPAANERVRKVLELERKRLQS 177          
BLAST of Gvermi5850.t1 vs. uniprot
Match: A0A2P6U0H0_CHLSO (LSM12-like protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0H0_CHLSO)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-14
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 0
Query:   56 LVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRITS 175
            + N+  + P   PAE         +DLQ+ R  E +     E E +++GVGV+  AQ +FD LAKT+ C WDG+ I++LD + ++PPY      T   G  AA  RV+ VL  E  R+ S
Sbjct:   58 VTNILQLKPAAGPAEPLP-----AVDLQRCREREDKAVRAAEAEAAKIGVGVTRQAQVIFDALAKTLPCRWDGERIVVLDEIVVSPPYET---CTSLHGDDAAAARVKKVLEAERQRLQS 169          
BLAST of Gvermi5850.t1 vs. uniprot
Match: A0A7R9WKN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKN5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.860e-13
Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = 0
Query:   23 DGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAP--FPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAIS 149
            D S    FV A +       + +I ++ I  + +V   +  P   PH ++ R         +     D R   EK     SQ+GV V+P AQ+VFD L KT  C WDGK I++LD+ R+APPYT ++ S
Sbjct:   44 DASSTAVFVQAIEHTTIKSTIRMIKNSSIKEIKIVGPPTAPPAALPHISKDR---------VHGREADRRGVAEKRA---SQIGVDVTPEAQSVFDALVKTYPCHWDGKTIVVLDTTRVAPPYTAESCS 160          
BLAST of Gvermi5850.t1 vs. uniprot
Match: S8A436_DACHA (AD domain-containing protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8A436_DACHA)

HSP 1 Score: 73.6 bits (179), Expect = 1.340e-12
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0
Query:   79 PLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRITSVADANGVKP 184
            P++LQ +R  E+   +    +    GVGVS   QA++  L+KTM C W GK I++LD+V +  PYTV+  S+   G+  A+ RV+ VL  E  R+  V  +N   P
Sbjct:  127 PINLQAMRNREQAALKLEYEKMLGHGVGVSEEGQAIYTALSKTMPCRWQGKHIIVLDTVIIQEPYTVEKCSSP-QGNENALARVKKVLEGERKRLNPVQRSNASTP 231          
BLAST of Gvermi5850.t1 vs. uniprot
Match: A0A1V9YWZ0_9STRA (AD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWZ0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.360e-12
Identity = 51/162 (31.48%), Postives = 82/162 (50.62%), Query Frame = 0
Query:   13 VGKPIAVHLS-DGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRI 173
            +G  + V+ S D + + G V   D  +G L LE        L+    V  + P   PA   +   +  +  ++LR  E+RT  + E   + +G  VSP+ QA+FD L+KTM C W G+ I +++ V + PPY   A +T  S +   +ERV+ VL  E  ++
Sbjct:   15 LGAWVRVYTSTDEAPIEGSVFTLDPVSGFLVLE--GQNNTLLLHSDVVTRIDPMAAPASGNE---SVRVSEEELRKLEQRTRLQAEKAIASIGKNVSPMGQALFDALSKTMPCEWRGQSIQVMNEVVIDPPY---ATNTTKSANKQMLERVKKVLDGELRKL 168          
BLAST of Gvermi5850.t1 vs. uniprot
Match: E1ZJ68_CHLVA (AD domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJ68_CHLVA)

HSP 1 Score: 70.5 bits (171), Expect = 6.100e-12
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   80 LDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPY-TVKAISTEGSGHAAAVERVQMVLTREAHRI 173
            +DL + R  E +     E E +++GV VS  AQA+FD LAKT+ C WDG  I++LD + +APPY T  ++  + +G    V RV  VL  E  R+
Sbjct:   80 VDLGRCREREDKAVRAAESEAAKIGVNVSRQAQAIFDALAKTLPCRWDGDRIVVLDEIVVAPPYETCTSLHNDDAG----VMRVSKVLDAERLRL 170          
BLAST of Gvermi5850.t1 vs. uniprot
Match: C1MT91_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT91_MICPC)

HSP 1 Score: 70.5 bits (171), Expect = 6.220e-12
Identity = 48/173 (27.75%), Postives = 85/173 (49.13%), Query Frame = 0
Query:   13 VGKPIAVHLSDGSLLRGFVHAEDRGAGLLCL----ELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRL-DERRTYEKHEHEF-------SQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISTEGSGHAAAVERVQMVLTREAHRI 173
            +G  ++   + G    G V   D G GL  L    +++ +  + ++    V  +         +  P + P  ++KL + DE R  ++ E          + +GV V+  AQ +FD LA+T+ C W+G+ I++LD V+++PPY  + +    +G   AVERVQ VL  E  ++
Sbjct:    8 IGHVVSGVTATGEKFAGEVFTFDEGTGLAVLRAKGDIVNTHDVRILRAEGVSDL---------KSTPPSDPPKMEKLPVVDEARCQKREEAAVKAATISAANIGVDVTAEAQDIFDALARTLPCRWEGRSIVVLDEVKISPPYA-ECVGV-ATGDPRAVERVQKVLAMEKSKL 169          
The following BLAST results are available for this feature:
BLAST of Gvermi5850.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFB2_9FLOR1.080e-8467.93Protein LSM12-like n=1 Tax=Gracilariopsis chorda T... [more]
R7QH47_CHOCR9.970e-5650.57LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 ... [more]
A0A2V0NSF4_9CHLO1.650e-1629.78AD domain-containing protein n=1 Tax=Raphidocelis ... [more]
A0A2R6P3K0_ACTCC8.780e-1531.49AD domain-containing protein n=4 Tax=Actinidia Tax... [more]
A0A2P6U0H0_CHLSO1.360e-1437.50LSM12-like protein n=1 Tax=Chlorella sorokiniana T... [more]
A0A7R9WKN5_9STRA8.860e-1334.88Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
S8A436_DACHA1.340e-1237.74AD domain-containing protein n=1 Tax=Dactylellina ... [more]
A0A1V9YWZ0_9STRA4.360e-1231.48AD domain-containing protein n=1 Tax=Thraustotheca... [more]
E1ZJ68_CHLVA6.100e-1241.05AD domain-containing protein n=1 Tax=Chlorella var... [more]
C1MT91_MICPC6.220e-1227.75Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019181Anticodon-binding domainSMARTSM00995AD_2coord: 76..165
e-value: 1.2E-21
score: 87.9
IPR019181Anticodon-binding domainPFAMPF09793ADcoord: 79..165
e-value: 4.6E-21
score: 74.7
IPR039683Protein Lsm12-likePANTHERPTHR13542LSM12 HOMOLOGcoord: 6..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:360259..361370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5850.t1Gvermi5850.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 360259..361370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5850.t1 ID=Gvermi5850.t1|Name=Gvermi5850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=185bp
MDARPQPGMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPSAQ
IALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEF
SQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAIST
EGSGHAAAVERVQMVLTREAHRITSVADANGVKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
IPR039683Lsm12-like