Gvermi5712.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5712.t1
Unique NameGvermi5712.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length315
Homology
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BLAST of Gvermi5712.t1 vs. uniprot
Match: A0A2V3ISL0_9FLOR (EF-hand domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL0_9FLOR)

HSP 1 Score: 375 bits (962), Expect = 2.240e-127
Identity = 204/311 (65.59%), Postives = 242/311 (77.81%), Query Frame = 0 
Query:    1 MSEKSKLNKVASDLHSLFVKLASACLREEPSDVEQFCLQWLATRHGIDLESELVITRVQSADSPVDKKWKAKKNRNRDREDGKKSRNAEDYTTDDNNDHSDIFHTDGDSKGSGSGLETLGRVKTVAENTQLSAPSCSLFSTAVISDEELERKTELYRNDDRMKSLFHAWDGDGSGKVDFVELVLALHKFEDVASAGVDIQVASDALVQFVESDTERELNLTEFTRVIILFALNNFHADFDSVADHMLKVATSTSEAAVLRAACGADVSDLQAADKEEQEFLRETVMGMEQHVTHNIQKLREQRTPRNCQSF 311
            MS  SK NK+ S+L  LF +L  ACL E P DV QFCLQWLA R+G   E +  IT +QS DS  +K ++ + +R+  +  G   +   DY T+D+ D +D F +D DSK SGSG   +GRV+TVA  +++   SC+LFSTAVIS EELERKT LY+ D+RMKSLF AWDGDGSG+VDFVELVLALHKFEDVASAG+DIQVASDALVQFVESDTERELNL EFTRVII+FALN FH DFD+VADHML VATSTSEAAVL+AA GADVS++QAADKEEQEFLR+T  G+EQ+VT NI K+R QRTPR+  S 
Sbjct:    1 MSRVSKRNKIKSELQGLFAELERACLEELPEDVGQFCLQWLADRNGFHFERKATITCIQSTDSIDNKTFRPQTSRS-PKATGNDLQRVADYNTEDSGDETDGFQSDCDSKDSGSGSVVIGRVETVASESEVGTASCALFSTAVISPEELERKTSLYQKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDALVQFVESDTERELNLAEFTRVIIIFALNCFHDDFDNVADHMLAVATSTSEAAVLQAASGADVSEIQAADKEEQEFLRQTAKGIEQNVTDNILKIRVQRTPRSSSSL 310
The following BLAST results are available for this feature:
BLAST of Gvermi5712.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISL0_9FLOR2.240e-12765.59EF-hand domain-containing protein n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 81..258
e-value: 7.6E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..115
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 170..182
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 157..192
score: 11.612284
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 160..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1223356..1224300 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5712.t1Gvermi5712.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 1223356..1224300 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5712.t1 ID=Gvermi5712.t1|Name=Gvermi5712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=315bp
MSEKSKLNKVASDLHSLFVKLASACLREEPSDVEQFCLQWLATRHGIDLE
SELVITRVQSADSPVDKKWKAKKNRNRDREDGKKSRNAEDYTTDDNNDHS
DIFHTDGDSKGSGSGLETLGRVKTVAENTQLSAPSCSLFSTAVISDEELE
RKTELYRNDDRMKSLFHAWDGDGSGKVDFVELVLALHKFEDVASAGVDIQ
VASDALVQFVESDTERELNLTEFTRVIILFALNNFHADFDSVADHMLKVA
TSTSEAAVLRAACGADVSDLQAADKEEQEFLRETVMGMEQHVTHNIQKLR
EQRTPRNCQSFGNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair