Gvermi5643.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5643.t1
Unique NameGvermi5643.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length163
Homology
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A2V3IPT6_9FLOR (Thioredoxin X, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT6_9FLOR)

HSP 1 Score: 176 bits (445), Expect = 1.670e-53
Identity = 100/158 (63.29%), Postives = 115/158 (72.78%), Query Frame = 0
Query:    6 AFVPSLTLGAPRRA--RAGALGRKPLQAAAAPARRARRARAQAAIRAS---APVEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIMEYM 158
            AF+  LTL APR A  R  A+ R  L      AR A   + +  IRA+    PVE   ++FE  V+K S T PVLVDFYAEWCGPCKLVAPLMDWAAAEFDG LKVVK+DT+KN+RFV++Y+IRGLPTFA+FK G  YGLREGAMGK ELE YI EYM
Sbjct:    6 AFLAPLTL-APRSAAFRTNAIARPALVGRHRRARNAVLHQQRLTIRAAEPAVPVEVIDETFENEVLKTSETLPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGQLKVVKIDTEKNERFVNDYTIRGLPTFAVFKNGTAYGLREGAMGKAELERYITEYM 162          
BLAST of Gvermi5643.t1 vs. uniprot
Match: R7QJF9_CHOCR (Thioredoxin TRX n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJF9_CHOCR)

HSP 1 Score: 144 bits (364), Expect = 2.960e-41
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 0
Query:   53 PVEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIMEY 157
            P++  +++FE  V+K     PVLVDFYAEWCGPCKL++PLMDWAA EF G LKVVKVDTDK+D  +  YSIRGLPTFA+FK G  +G+REGAMGK  LE YI++Y
Sbjct:   54 PLDITSENFESDVLKSDK--PVLVDFYAEWCGPCKLMSPLMDWAATEFKGKLKVVKVDTDKDDVLIDTYSIRGLPTFAVFKDGEAFGVREGAMGKPALEDYILKY 156          
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A7J7INP8_9RHOD (Thioredoxin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7INP8_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 1.030e-31
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 0
Query:   46 AAIRASAPVEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIME 156
            AA+R+ AP   D D FE  V++    TPVLVDFYAEWCGPCKL+APL+DWAAAE+ G +K+ K+DT++N +F+  Y I GLPT  + + G+V    EGA+GK  L  ++ E
Sbjct:   12 AALRSKAPSITD-DRFETEVLQAE--TPVLVDFYAEWCGPCKLIAPLIDWAAAEYSGKVKIFKLDTEQNPKFLPRYGISGLPTLILLRNGDVVAQHEGAIGKSALVQFLSE 119          
BLAST of Gvermi5643.t1 vs. uniprot
Match: M2XHT7_GALSU (Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHT7_GALSU)

HSP 1 Score: 120 bits (301), Expect = 1.290e-31
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 0
Query:   54 VEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIMEYM 158
            VE D   FE++V++     PVLVDF+A+WCGPCKLV PL+DW  +E+ G LKVVK+DTDKN R+V +Y +RGLPT  +F+ G +    EGA+GK  ++ YI +++
Sbjct:   62 VEVDDTHFEQQVLQSQ--IPVLVDFHADWCGPCKLVTPLLDWLVSEYGGKLKVVKIDTDKNPRYVKQYDVRGLPTLIIFQDGRLVASSEGALGKKGIQQYIEKHL 164          
BLAST of Gvermi5643.t1 vs. uniprot
Match: M1VAA6_CYAM1 (Thioredoxin n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VAA6_CYAM1)

HSP 1 Score: 117 bits (294), Expect = 1.630e-30
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 0
Query:   59 DSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIME 156
            D FE  V++     PVLVDFYAEWCGPCKL+APL+DWAA EF G +KV K+DTD N +F++ Y I GLPT  + KKG+V    EGA+GK  L  ++ E
Sbjct:   72 DMFESEVLQAD--VPVLVDFYAEWCGPCKLIAPLIDWAANEFSGKMKVYKLDTDTNPKFLTRYGISGLPTLILMKKGDVVARHEGAIGKPALTQFLTE 167          
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A5J4Z7X6_PORPP (Thioredoxin X, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7X6_PORPP)

HSP 1 Score: 117 bits (293), Expect = 1.850e-30
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   57 DADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGK 147
            + D+F+E V+K S  TPVLVDFYA+WCGPCKL+APLMDWAA+ +   LKVVKVDT+KN  FV +Y I GLPT A+F  G      EGAM K
Sbjct:   62 EGDAFDEEVLKSS--TPVLVDFYADWCGPCKLMAPLMDWAASNYGDKLKVVKVDTEKNQNFVRDYKIHGLPTLAVFVNGENVAQVEGAMSK 150          
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A7S0BHJ8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHJ8_9RHOD)

HSP 1 Score: 114 bits (285), Expect = 5.680e-29
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   55 EADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGK 147
            E   DSF+  V++     PVLVDFYA WCGPCKL+AP+MDW A+E++G L+VVK+DT+K   FV EYSI GLPT A+FK G      EGA+GK
Sbjct:   84 EVSKDSFQGEVMESD--LPVLVDFYAAWCGPCKLIAPVMDWCASEYEGKLRVVKIDTEKYPNFVREYSIHGLPTLAIFKNGENISQIEGAIGK 174          
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A8J4FV41_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4FV41_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 7.720e-28
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 0
Query:   61 FEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVY--GLREGAMGKGELEGYIMEY 157
            F+E+V+K    TPVLVDF+A WCGPCKLVAPLMDW   E++G LKVVK++ D N + +++Y + GLPT  +FK G       REGA+ KG LE Y+ +Y
Sbjct:   46 FDEQVLKAD--TPVLVDFWAAWCGPCKLVAPLMDWVEQEYNGKLKVVKIEHDSNPQLIAKYKVYGLPTLIVFKNGEEVPGSKREGAITKGLLEQYLRKY 142          
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A2E1RXJ5_9RHOB (Thioredoxin n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E1RXJ5_9RHOB)

HSP 1 Score: 107 bits (268), Expect = 1.980e-27
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 0
Query:   52 APVEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIME 156
            A ++   DSFE+ V+K    TPV+VDF+AEWCGPCK +AP ++  +AEFDG +KVVK++ D+N    S+Y +RG+PT  +FK GNV   + GA+ KG +  +I +
Sbjct:    2 ATIKVSDDSFEQDVLKAD--TPVVVDFWAEWCGPCKQIAPALEELSAEFDGKVKVVKINIDENPNTPSQYGVRGIPTLMIFKDGNVAATKVGALPKGRISEWISQ 104          
BLAST of Gvermi5643.t1 vs. uniprot
Match: A0A0P7WN01_9GAMM (Thioredoxin n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A0P7WN01_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 2.100e-27
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 0
Query:   54 VEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGELEGYIMEYM 158
            V+   DSF+  VI      PVLVDF+AEWCGPCK++AP++D  A EFDG LKV K++ D N++   +Y+IRG+PT  +FK G V G + GAM K +L  +I E++
Sbjct:    6 VQLSDDSFDADVINADQ--PVLVDFWAEWCGPCKMIAPILDEVATEFDGKLKVGKLNVDHNNQTPPKYNIRGIPTLLLFKNGEVVGTKVGAMSKTQLAEFINEHV 108          
The following BLAST results are available for this feature:
BLAST of Gvermi5643.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPT6_9FLOR1.670e-5363.29Thioredoxin X, chloroplastic n=1 Tax=Gracilariopsi... [more]
R7QJF9_CHOCR2.960e-4164.76Thioredoxin TRX n=1 Tax=Chondrus crispus TaxID=276... [more]
A0A7J7INP8_9RHOD1.030e-3152.25Thioredoxin n=1 Tax=Cyanidiococcus yangmingshanens... [more]
M2XHT7_GALSU1.290e-3151.43Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=... [more]
M1VAA6_CYAM11.630e-3056.12Thioredoxin n=1 Tax=Cyanidioschyzon merolae (strai... [more]
A0A5J4Z7X6_PORPP1.850e-3061.54Thioredoxin X, chloroplastic n=1 Tax=Porphyridium ... [more]
A0A7S0BHJ8_9RHOD5.680e-2958.06Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8J4FV41_9CHLO7.720e-2853.54Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A2E1RXJ5_9RHOB1.980e-2747.62Thioredoxin n=3 Tax=Alphaproteobacteria TaxID=2821... [more]
A0A0P7WN01_9GAMM2.100e-2749.52Thioredoxin n=10 Tax=Gammaproteobacteria TaxID=123... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 82..91
score: 64.94
coord: 122..133
score: 36.34
coord: 74..82
score: 63.7
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 54..160
e-value: 4.1E-28
score: 99.5
NoneNo IPR availablePANTHERPTHR45663:SF22THIOREDOXIN X, CHLOROPLASTICcoord: 33..159
NoneNo IPR availablePANTHERPTHR45663GEO12009P1coord: 33..159
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..162
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availableCDDcd02947TRX_familycoord: 59..154
e-value: 2.75937E-29
score: 101.096
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 55..154
e-value: 3.1E-26
score: 91.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 28..159
score: 12.793039
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 75..93
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 51..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:842511..843091 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5643.t1Gvermi5643.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 842511..843091 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5643.t1 ID=Gvermi5643.t1|Name=Gvermi5643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=163bp
MAVFSAFVPSLTLGAPRRARAGALGRKPLQAAAAPARRARRARAQAAIRA
SAPVEADADSFEERVIKQSHTTPVLVDFYAEWCGPCKLVAPLMDWAAAEF
DGDLKVVKVDTDKNDRFVSEYSIRGLPTFAMFKKGNVYGLREGAMGKGEL
EGYIMEYMKGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR036249Thioredoxin-like_sf