Gvermi5581.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5581.t1
Unique NameGvermi5581.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length408
Homology
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A2V3IX32_9FLOR (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX32_9FLOR)

HSP 1 Score: 533 bits (1374), Expect = 3.280e-187
Identity = 292/414 (70.53%), Postives = 332/414 (80.19%), Query Frame = 0
Query:    1 MSALAFSPAP-LPVRA-------CTQRRSRALSHAPHMVVAAPQASRSSSVARPRTPSRTPSRIQPRPPTTAADDNHLLSYLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEWTQ 406
            M+  AFSPA  LP  A        T RR RA    P MVVAAP        A+P  P+R PSR        A  D  L+SYLRDIGA+S+LSD EV TCA +IA L RWERV+D L   A   TQKRRLLTSRYRRHAKP+P A+VS++DWA AL M    FA+ALR AR++KDRLVAANLRLVVSIAKKYQGSGV L+DLIQEGSLGLIRAAEKFDA KGFKFTTYASWWIRQ+VQRAV+DSSR IRLPTHVADAA+KA+RL+ QFE ++N  P+V +LA+MM +  +RLSFI+ KAEQTDTLSLDCP+FPAS+ S+ +SLG+C+ A+GTSPEEEVS+ LLREDVENVLLMLSPREREVLRMRYGFDDG TKNFDEIG++YSVPASRIRQIEARAMRKLRHPNFHRCLT+W Q
Sbjct:    1 MTPFAFSPAATLPATAPAPHPPPITPRRERA----PRMVVAAP--------AKP--PARMPSR-------PATSDTALISYLRDIGAISLLSDAEVRTCARYIAELCRWERVRDRLRAEAAQRTQKRRLLTSRYRRHAKPIPPASVSLSDWAAALGMQPNVFASALRHARVHKDRLVAANLRLVVSIAKKYQGSGVTLSDLIQEGSLGLIRAAEKFDAHKGFKFTTYASWWIRQAVQRAVADSSRSIRLPTHVADAAKKARRLSSQFERDHNRTPAVHELADMMGMKAERLSFILHKAEQTDTLSLDCPMFPASTSSKMVSLGECLPAAGTSPEEEVSKGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGRMYSVPASRIRQIEARAMRKLRHPNFHRCLTDWKQ 393          
BLAST of Gvermi5581.t1 vs. uniprot
Match: R7QQE4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQE4_CHOCR)

HSP 1 Score: 380 bits (976), Expect = 2.250e-126
Identity = 223/425 (52.47%), Postives = 280/425 (65.88%), Query Frame = 0
Query:    3 ALAFSPAPLPVRACTQ--------------RRSRALSHAPHMVVAAPQASRSSSVARPRTPSRTPSRIQPRPPTTAADDNHLLSYLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRL-----LTSRYRRHAKPVPAATV---SIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPAS-SQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            A+AFSP P+P     +              RR+R  S    MV+AAP+    +SVA   +   +P R       +   D  LL+YL++IG+V +L   EV  CA H+  L  WE +K  LD A V             +++RY R  K   +  V   S+ +WA A + D   F A L +AR+YKDRLV ANLRLVVSIAKKY  +G+ L DLIQEGSLGLIR AEKFD +KGF+F TYASWWIRQ++QRA+SDSSR IRLPTHV D A+KAKR+ R FE E N P +  +LA M+ +  +RLSFI++K  +TDT+SLD PLF  +    + +SLGD I     SPEE VS  LLR+D+ENVLLML+P+EREVLRMRYGFDDG++KNF+EIG IY VP +RIRQIEARA+RKLRHPNFHRCL +W
Sbjct:    4 AVAFSPMPVPSSPFLRTVPPPTRLRIPPVIRRARRTS----MVLAAPKP--ITSVAPASSKQASPVRRPFNDGRSDLSDGGLLAYLKEIGSVDLLEGHEVVECARHVRLLLHWEGIKRELDAAPVPKEGGEAEPCDVPISARYSRATKDRDSPAVRSASLQEWAAACDQDPHQFEADLNRARMYKDRLVRANLRLVVSIAKKYSNNGISLADLIQEGSLGLIRGAEKFDHTKGFRFATYASWWIRQAIQRAISDSSRVIRLPTHVNDIAKKAKRIRRDFERENNRPLTNSELARMLEIKEERLSFILNKTLETDTVSLDVPLFGNNFDHGKSVSLGDMIENPTASPEEAVSAGLLRDDIENVLLMLTPKEREVLRMRYGFDDGKSKNFEEIGAIYCVPPNRIRQIEARAIRKLRHPNFHRCLIDW 422          
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A1X6PF57_PORUM (RNA_pol_sigma70 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PF57_PORUM)

HSP 1 Score: 297 bits (761), Expect = 5.620e-94
Identity = 167/340 (49.12%), Postives = 226/340 (66.47%), Query Frame = 0
Query:   67 DNHLLSYLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRP--LSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            D  L++YL++IG V++L D+EV   +  +  L  WE VK   D  A               +H +P      SIA+WA  L+M    FA  L +AR  KDRLV+ANLRLVVSIAK+Y+  G  L+DLIQEGSLGLIR AEK+D +KG++F TYASWWIRQ++QRA++D++R IRLP HV   A KA R  +    E    PS E+LAE + +TP RL FI+SKA +T ++SL+ P+F  +S       +LGD +   G SPEE V+  LLR+D++N+LLMLSPRER+V+R+RYGFDDG+ K  +EI ++Y VP SRIRQ+E RA+R+L+  NF   L ++
Sbjct:  105 DASLMAYLKEIGGVALLRDEEVVATSQLVTLLLAWEDVKS--DFVAT--------------QHREP------SIAEWAARLDMAPEVFARDLARARHAKDRLVSANLRLVVSIAKRYRNRGCSLSDLIQEGSLGLIRGAEKYDHTKGYRFATYASWWIRQAIQRALADTTRTIRLPVHVNTVATKASRTRQLLSQELGREPSEEELAERLGVTPARLDFILSKAVETSSVSLETPMFGGNSNGAASHTTLGDLLENKGVSPEEAVTAELLRDDLDNMLLMLSPRERDVMRLRYGFDDGKPKGMEEIARMYQVPTSRIRQMETRAIRRLKQ-NFCHVLRDY 421          
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A2V3IWX5_9FLOR (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWX5_9FLOR)

HSP 1 Score: 291 bits (746), Expect = 1.420e-89
Identity = 166/346 (47.98%), Postives = 221/346 (63.87%), Query Frame = 0
Query:   59 RPPTTAADDNHLLSYLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            +P TT+A+D  + SYLR+IG V +L  D+  T A  I+ L   ER+                  ++R+    K +     SI +WADA +MDH  F   LR     K+ +VAANLRLVVSIAKKY   G+   DLIQEGS+GLIR AEKFD +KGFKF+TYA+WWIRQ++ RA++D SRPIRLP HV D     ++  +Q  +E N PPS  ++AE MRL+ ++L F+   +  T  LSL+ P+    S+    +LG  I  +G +PEE   + LLRED+ENVL  LSPRER+V+RMRYGFDDG+ K  +EIG I++V   RIRQIEA+A+RKLRHP  +  L E+
Sbjct:  280 QPKTTSANDT-IRSYLREIGEVKLLDADKEITLARQISKLLALERI------------------SARF----KSINGRHPSIEEWADAASMDHPTFRQVLRDGLRAKEHMVAANLRLVVSIAKKYLNRGLTFQDLIQEGSIGLIRGAEKFDGNKGFKFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTISAIRKTTKQLFSELNRPPSESEIAERMRLSVEKLRFLTRSSRST--LSLETPI-GRDSRDSAATLGSFIEWNGDTPEEATVKSLLREDIENVLNTLSPRERDVVRMRYGFDDGKMKTLEEIGTIFAVTRERIRQIEAKALRKLRHPTRNAVLREY 599          
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A7S2ZM22_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZM22_9RHOD)

HSP 1 Score: 278 bits (710), Expect = 1.270e-86
Identity = 160/370 (43.24%), Postives = 234/370 (63.24%), Query Frame = 0
Query:   41 SSVARPRTP-SRTPSRIQPRPPTTAAD--DNHLLSYLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKY-QGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEWTQ 406
            ++VAR  T   + P++++    T A    D+ L++YL++IG+V ML ++EV  C+  +  L  WE               KR   T +  R    V        +WA+AL M H  F   L + R  K+RL++ NLRLVVSIAKKY  G+ + + DLIQEGSLGLIR AE+FDASKGF+F TY SWWIRQ++ RA ++S+RPIRLP+H++   RK  R+ +    + +  P++E++A  M +  ++L F++ K ++T+T+SLD P+   S ++  + L D I     +P+E V++ LLR+D+ENVL ML+  E++V+RMRYGFDDG  KN  +I  +YSV   +IRQIE RAMRKLRHP+ +R L E+ Q
Sbjct:   54 AAVARKETVVEKVPNKVEAPKKTRAGAGMDSSLMAYLKEIGSVHMLENEEVVECSRSVQKLLMWE--------------SKRSDCTKQLGRDPTYV--------EWANALGMPHTRFVPELIRLRNAKERLISGNLRLVVSIAKKYVSGTTLSMLDLIQEGSLGLIRGAERFDASKGFRFATYVSWWIRQAIYRAANESARPIRLPSHLSTTTRKVGRVKKALFLKLSREPTMEEIAGEMEMPVEKLLFVLEKNKETETVSLDKPIQGMSGEN--VFLSDFIVDERITPDECVTQTLLRDDLENVLSMLTDTEKQVMRMRYGFDDGAMKNHTQIANLYSVSPVKIRQIETRAMRKLRHPSMNRSLKEYVQ 399          
BLAST of Gvermi5581.t1 vs. uniprot
Match: B4WPM0_SYNS7 (RNA polymerase sigma factor SigA n=2 Tax=Cyanobacteria TaxID=1117 RepID=B4WPM0_SYNS7)

HSP 1 Score: 272 bits (695), Expect = 2.460e-84
Identity = 153/332 (46.08%), Postives = 210/332 (63.25%), Query Frame = 0
Query:   73 YLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            YL++IG + +L  +E    A  IA+L   ER++D +D                 +   +P  A      DWA+A++M   AF   L Q R  KD++V +NLRLVVSIAKKY   G+   DLIQEGSLGLIRAAEKFD  KG+KF+TYA+WWIRQ++ RA++D SR IRLP H+ +   + K+  +    E    P+ E++A  M +T ++L FI   A+    +SL+ P+     +     LGD I + G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG DDGR K  +EIG+I++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   99 YLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDD----------------QLDDEPTDA------DWANAVDMPLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 402          
BLAST of Gvermi5581.t1 vs. uniprot
Match: K8GQ72_9CYAN (RNA polymerase sigma factor SigA n=7 Tax=Bacteria TaxID=2 RepID=K8GQ72_9CYAN)

HSP 1 Score: 271 bits (693), Expect = 2.540e-84
Identity = 152/332 (45.78%), Postives = 208/332 (62.65%), Query Frame = 0
Query:   73 YLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            YL++IG + +L  DE    A  IA+L   ER++++L      T Q                       A+WA+A+NM   AF   L   R  KD++V +NLRLVVSIAKKY   G+   DLIQEGSLGLIRAAEKFD  KG+KF+TYA+WWIRQ++ RA++D SR IRLP H+ +   + K+  +    E    P+ E++A  M +T ++L FI   A+    +SL+ P+     +     LGD I + G +PE++V++ LLRED+ENVL  LSPRER+VLR+RYG DDGR K  +EIG+I++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   77 YLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQD----------------------AEWANAVNMTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDQVAKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 380          
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A6M0RQ52_9CYAN (RNA polymerase sigma factor SigA n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A6M0RQ52_9CYAN)

HSP 1 Score: 270 bits (690), Expect = 6.350e-84
Identity = 152/332 (45.78%), Postives = 204/332 (61.45%), Query Frame = 0
Query:   73 YLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            YL++IG + +L  +E    A  IA+L   ER++D L     H                          ADWA A++M   AF   L   R  KD++V +NLRLVVSIAKKY   G+   DLIQEGSLGLIRAAEKFD  KG+KF+TYA+WWIRQ++ RA++D SR IRLP H+ +   + K+  +    E    P+ E++A  M +T ++L FI   A+    +SL+ P+     +     LGD I + G +PE+EVS+ LLRED+E VL  LSPRER+VLR+RYG DDGR K  +EIG+I++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   73 YLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDD----------------------ADWAAAVDMPLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 376          
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A0P8C346_9CYAN (RNA polymerase sigma factor SigA n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A0P8C346_9CYAN)

HSP 1 Score: 270 bits (690), Expect = 1.230e-83
Identity = 152/332 (45.78%), Postives = 209/332 (62.95%), Query Frame = 0
Query:   73 YLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            YL++IG + +L  +E    A  IA+L   ER++D +D                 +   +P  A      DWA+A++M   AF   L   R  KD++V +NLRLVVSIAKKY   G+   DLIQEGSLGLIRAAEKFD  KG+KF+TYA+WWIRQ++ RA++D SR IRLP H+ +   + K+  +    E    P+ E++A  M +T ++L FI   A+    +SL+ P+     +     LGD I + G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG DDGR K  +EIG+I++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   95 YLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDD----------------QLDDEPTDA------DWANAVDMPLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 398          
BLAST of Gvermi5581.t1 vs. uniprot
Match: A0A845XA58_9CYAN (RNA polymerase sigma factor SigA n=2 Tax=Spirulina TaxID=1154 RepID=A0A845XA58_9CYAN)

HSP 1 Score: 269 bits (688), Expect = 1.350e-83
Identity = 153/332 (46.08%), Postives = 210/332 (63.25%), Query Frame = 0
Query:   73 YLRDIGAVSMLSDDEVATCAAHIANLSRWERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMDHAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLGLIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAARKAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDCPLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPREREVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 404
            YL++IG + +L  +E    A  IA L  +ERV+D L             + SR     +P      S+ +WA A+ +D   F   L   R  KD++V +NLRLVVSIAKKY   G+   DLIQEGSLGLIRAAEKFD +KG+KF+TYA+WWIRQ++ RA++D SR IRLP H+ +   + K+  +    E    P+ E++A  M +T ++L FI   A+    +SL+ P+     +     LGD I A G +PE++VS+ LLRED+E+VL  LSPRER+VLR+RYG DDGR K  +EIG+I++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   72 YLQEIGRIRLLRAEEEIELARKIAELLEFERVRDEL-------------MDSREDEDDEP------SLEEWAAAVKLDFPDFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHAKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIEADGETPEDQVSKSLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 378          
The following BLAST results are available for this feature:
BLAST of Gvermi5581.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX32_9FLOR3.280e-18770.53RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
R7QQE4_CHOCR2.250e-12652.47Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PF57_PORUM5.620e-9449.12RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A2V3IWX5_9FLOR1.420e-8947.98RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
A0A7S2ZM22_9RHOD1.270e-8643.24Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
B4WPM0_SYNS72.460e-8446.08RNA polymerase sigma factor SigA n=2 Tax=Cyanobact... [more]
K8GQ72_9CYAN2.540e-8445.78RNA polymerase sigma factor SigA n=7 Tax=Bacteria ... [more]
A0A6M0RQ52_9CYAN6.350e-8445.78RNA polymerase sigma factor SigA n=8 Tax=Leptolyng... [more]
A0A0P8C346_9CYAN1.230e-8345.78RNA polymerase sigma factor SigA n=3 Tax=Leptolyng... [more]
A0A845XA58_9CYAN1.350e-8346.08RNA polymerase sigma factor SigA n=2 Tax=Spirulina... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 366..381
score: 30.28
coord: 192..205
score: 68.34
coord: 345..357
score: 52.61
coord: 381..392
score: 62.53
coord: 216..224
score: 73.19
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 192..205
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 366..392
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 168..236
e-value: 5.1E-19
score: 67.8
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 241..321
e-value: 5.9E-8
score: 35.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 327..407
e-value: 5.8E-25
score: 88.8
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 344..394
e-value: 1.3E-16
score: 59.8
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 166..394
e-value: 3.9E-32
score: 109.1
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 249..327
e-value: 3.1E-6
score: 27.2
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 88..240
e-value: 1.8E-41
score: 144.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..61
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 52..396
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 52..396
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..407
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 335..393
e-value: 5.77255E-12
score: 58.2698
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 241..308
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 310..397
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 66..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:639805..641028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5581.t1Gvermi5581.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 639805..641028 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5581.t1 ID=Gvermi5581.t1|Name=Gvermi5581.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=408bp
MSALAFSPAPLPVRACTQRRSRALSHAPHMVVAAPQASRSSSVARPRTPS
RTPSRIQPRPPTTAADDNHLLSYLRDIGAVSMLSDDEVATCAAHIANLSR
WERVKDTLDTAAVHTTQKRRLLTSRYRRHAKPVPAATVSIADWADALNMD
HAAFAAALRQARLYKDRLVAANLRLVVSIAKKYQGSGVGLTDLIQEGSLG
LIRAAEKFDASKGFKFTTYASWWIRQSVQRAVSDSSRPIRLPTHVADAAR
KAKRLARQFETEYNYPPSVEQLAEMMRLTPQRLSFIMSKAEQTDTLSLDC
PLFPASSQSRPLSLGDCIAASGTSPEEEVSRCLLREDVENVLLMLSPRER
EVLRMRYGFDDGRTKNFDEIGKIYSVPASRIRQIEARAMRKLRHPNFHRC
LTEWTQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007627RNA_pol_sigma70_r2
IPR036388WH-like_DNA-bd_sf
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR007624RNA_pol_sigma70_r3
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2